RadishBase

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Alignment for radish unigene UN22208

               1      -     51
UN22208        --> ACTTTTACAATTAATCGAATAATCTTATAATTAAAGTCTAGCCATTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................
EV524430       <-- ..................................................
EX754051       <-- ..................................................
EW713450       <-- ..................................................
EW713451       <-- ..................................................
EV536004       <-- ..................................................
FD544017       <-- ..................................................
EW726467       <-- ..................................................
EY901177       <-- ..................................................
FD980022       <-- ..................................................
EW725667       <-- ..................................................
FD975978       --> ACTTTTACAATTAATCGAATAATCTTATAATTAAAGTCTAGCCATTTTTT
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> ..................................................
EX892853       --> ..................................................
EY896546       --> ..................................................
EW718345       --> ..................................................
EW718606       --> ..................................................
EX758459       --> ..................................................
FD528658       --> ..................................................
FD532796       --> ..................................................
EV529430       --> ..................................................

               51     -    101
UN22208        --> GAATATTAAAAAAAACCTTACATGTTTTATTTTCTTTATTGCTTCCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................
EV524430       <-- ..................................................
EX754051       <-- ..................................................
EW713450       <-- ..................................................
EW713451       <-- ..................................................
EV536004       <-- ..................................................
FD544017       <-- ..................................................
EW726467       <-- ..................................................
EY901177       <-- ..................................................
FD980022       <-- ..................................................
EW725667       <-- ..................................................
FD975978       --> GAATATTAAGAAAAACCTTACATGTTTTATTTTCTTCATTGCTTCCAATT
EV540544       --> ggATATTAAAAAAAACCTTGCATGTTTTATTTTCTTCATTGCTTCCAATT
EW730101       --> .......AAAAAAAACCTTACATGTTTTATTTTCTTTATTGCTTCCAATT
EW730622       --> ........agAAAAACCTTACATGTTTTATTTTCTTTATTGCTTCCAATT
EX892853       --> .......aagAAAAACCTTACATGTTTTATTTTCTTTATTGCTTCCAATT
EY896546       --> .............................TTTTCTTTATTGCTTCCAATT
EW718345       --> ....................................TATTGCTTCCAATT
EW718606       --> ....................................TATTGCTTCCAATT
EX758459       --> ..................................................
FD528658       --> ..................................................
FD532796       --> ..................................................
EV529430       --> ..................................................

               101    -    151
UN22208        --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................
EV524430       <-- ..................................................
EX754051       <-- ..................................................
EW713450       <-- ..................................................
EW713451       <-- ..................................................
EV536004       <-- ..................................................
FD544017       <-- ..................................................
EW726467       <-- ..................................................
EY901177       <-- ..................................................
FD980022       <-- ..................................................
EW725667       <-- ..................................................
FD975978       --> GAAATCTTTCACAGCTTAAAAAGGATCATATCTAAGCTTCCAAATAAATA
EV540544       --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
EW730101       --> GAAATCTTTCACAGCTTAATAAGGATCATATCTAAGCTTCCAAATAAATA
EW730622       --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
EX892853       --> GAAATCTTTCACAGCTTAGTAAGGACCATAACTAAGCTTCCAAATAAATA
EY896546       --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
EW718345       --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
EW718606       --> GAAATCTTTCACAGCTTAGTAAGGATCATATCTAAGCTTCCAAATAAATA
EX758459       --> .........................................AAATAAATA
FD528658       --> ...........................................ATAAATA
FD532796       --> ..................................................
EV529430       --> ..................................................

               151    -    201
UN22208        --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524430       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- ..................................................  Raphanus sativus var. oleiformis
EW713451       <-- ..................................................  Raphanus sativus var. oleiformis
EV536004       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD980022       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975978       --> AAGAACTTTTGAGTTTTATAACTTTATCCATCCTTATTGTATCATCAACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> AAGAACTTTTGAGTTTTATAACTTTCTCCATCCTTATTGTATCATCAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus sativus cv Early Scarlet Globe
EW730622       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus sativus cv Early Scarlet Globe
EX892853       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus sativus var. oleiformis
EY896546       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus raphanistrum subsp. maritimus
EW718345       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus sativus var. oleiformis
EW718606       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCATTATTGTATCATCAACC  Raphanus sativus var. oleiformis
EX758459       --> AAGAACTTTTGAGTTTTATAACTTTCTCCATCCTTATTGTATCATCAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> AAGAACTTTTGAGTTTTACAACTTTCTCCATCCTTATTGTATCATCAACC  Raphanus raphanistrum subsp. maritimus
FD532796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529430       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN22208        --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTGTTCCATAGAACTTGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ................................TTCCATAGAACTTGTGAA  Raphanus raphanistrum subsp. maritimus
EV524430       <-- ..................................CCATAGAACTTGTGAA  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- ..................................................  Raphanus sativus var. oleiformis
EW713451       <-- ..................................................  Raphanus sativus var. oleiformis
EV536004       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD980022       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTCTTCCATAGAACTTGTGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ACTTTATTTCTTCTTTAAATTTTGTTGCCTTCTTCCATAAAACTTGTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ACTTTATTTCTTCTTTAAATTTTGTTGCCTTGTTCCATAAAACTTGTGAA  Raphanus sativus cv Early Scarlet Globe
EW730622       --> ACTTTATTTCTTCTT-AAATTTTGTTGCCTTGTTCCATAGAACTTGTGAA  Raphanus sativus cv Early Scarlet Globe
EX892853       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTGTTCCATAGAACTTGTGAA  Raphanus sativus var. oleiformis
EY896546       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTGTTCCATAGAACTTGTGAA  Raphanus raphanistrum subsp. maritimus
EW718345       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTGTTCCATAGAACTTGTGAA  Raphanus sativus var. oleiformis
EW718606       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTGTTCCATAGAACTTGTGAA  Raphanus sativus var. oleiformis
EX758459       --> ACTTTATTTCTTCTTTAGATTTTGTTGCCTTCTTCCATAAAACTTGTGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> ACTTTATTTCTTCCTTAGATTTTGTTGCCTTGTTCCATAAAACTTGTGAA  Raphanus raphanistrum subsp. maritimus
FD532796       --> ..................................ggATAGAACTTGTGAA  Raphanus raphanistrum subsp. maritimus
EV529430       --> .........................................ACTTGTGAA  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN22208        --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EV524430       <-- ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EX754051       <-- ..................................................
EW713450       <-- ..................................................
EW713451       <-- ..................................................
EV536004       <-- ..................................................
FD544017       <-- ..................................................
EW726467       <-- ..................................................
EY901177       <-- ..................................................
FD980022       <-- ..................................................
EW725667       <-- ..................................................
FD975978       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EV540544       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAATCTTTTTGC
EW730101       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EW730622       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EX892853       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EY896546       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EW718345       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EW718606       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EX758459       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAATCTTTTTGC
FD528658       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
FD532796       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC
EV529430       --> ACTTGAACTCCCTTTTGTGTTTTGAGTGAAAAAGCTTAAAAGCTTTTTGC

               301    -    351
UN22208        --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus
EV524430       <-- TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ....................TTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- ......................CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus var. oleiformis
EW713451       <-- ......................CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus var. oleiformis
EV536004       <-- .......................ctGCTTTCACTGATT-GGTTTATT-AA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- ..........................................TTATTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- .............................ctgcttcactgattgtttatt  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD980022       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975978       --> TGCCAATCTCCACTTTTTTT--CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus cv Early Scarlet Globe
EW730622       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus cv Early Scarlet Globe
EX892853       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus var. oleiformis
EY896546       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus
EW718345       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus var. oleiformis
EW718606       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus sativus var. oleiformis
EX758459       --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus
FD532796       --> TGCCAATCTCCACTTTTTTTT-CTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus
EV529430       --> TGCCAATCTCCACTTTTTTTTTCTGGCTTTCACTGATTTGGTTTATTTAA  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN22208        --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGTA  Raphanus raphanistrum subsp. maritimus
EV524430       <-- TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGTA  Raphanus raphanistrum subsp. maritimus
EX754051       <-- TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus var. oleiformis
EW713451       <-- TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus var. oleiformis
EV536004       <-- T-AT-GCACTCTGTTAT-CATCACCAGAC-GTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- TTACTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- aatcTGCACTCTGT-AT-CATCACCAGAC-GTA-TGA-GA-CCAAA-GGA  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- .....................................AGAACCAAA-GGA  Raphanus raphanistrum subsp. maritimus
FD980022       <-- .....................................AGAAC-AAAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- .....................................tgagaccAAAGGA  Raphanus sativus cv Early Scarlet Globe
FD975978       --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAAAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAAAACCAAAAGGA  Raphanus sativus cv Early Scarlet Globe
EW730622       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus cv Early Scarlet Globe
EX892853       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus var. oleiformis
EY896546       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. maritimus
EW718345       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus var. oleiformis
EW718606       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus sativus var. oleiformis
EX758459       --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAAAACCAAAAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGTA  Raphanus raphanistrum subsp. maritimus
FD532796       --> TTCTTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGGA  Raphanus raphanistrum subsp. maritimus
EV529430       --> TTATTGCACTCTGTTATTCATCACCAGACCGTAATGAAGAACCAAAAGTA  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN22208        --> TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
EV524430       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
EX754051       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus var. oleiformis
EW713451       <-- TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus var. oleiformis
EV536004       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- TGAGATCACAA-CG-AAACGCCA-GTTATGAGTAT-AATCGCTGAAACTC  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTA-TCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
FD980022       <-- TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTA-TCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- TGAGATCACAA-CGAAAACGCCAAGTTATGAGTAT-AATCGCTGAAACTC  Raphanus sativus cv Early Scarlet Globe
FD975978       --> TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> TGAAATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> TGAGATCACAAACGAAAACCCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus cv Early Scarlet Globe
EW730622       --> TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus cv Early Scarlet Globe
EX892853       --> TGAGATCACAGACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus var. oleiformis
EY896546       --> TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
EW718345       --> TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus var. oleiformis
EW718606       --> TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus sativus var. oleiformis
EX758459       --> TGAAATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
FD532796       --> TGAGATCACAAACGAAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
EV529430       --> TGAGATCACAAACGCAAACGCCAAGTTATGAGTATTAATCGCTGAAACTC  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN22208        --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- CACTTGTTGTTGAATTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. maritimus
EV524430       <-- CACTTGTTGTTGAATTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. maritimus
EX754051       <-- CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus sativus var. oleiformis
EW713451       <-- CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus sativus var. oleiformis
EV536004       <-- CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- CACTTGTTGTTGAGTTG-CTTT------GCAGTAGCAG------CAGCAA  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- CACTTGTTGTTGAGTTGGCTTTGCAGTAGCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. maritimus
FD980022       <-- CACTTGTTGTTGAGT-GGCTTT------GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- CACTTGTTGTTGAGTTGGATTT------GCAGTAGCAG------CAGCAA  Raphanus sativus cv Early Scarlet Globe
FD975978       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAACAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> CACTTGTTGTTGAGTTGGATTT----T-GCAGTAACAG------CAGCAA  Raphanus sativus cv Early Scarlet Globe
EW730622       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus sativus cv Early Scarlet Globe
EX892853       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus sativus var. oleiformis
EY896546       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus raphanistrum subsp. maritimus
EW718345       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus sativus var. oleiformis
EW718606       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus sativus var. oleiformis
EX758459       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> CACTTGTTGTTGAATTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. maritimus
FD532796       --> CACTTGTTGTTGAGTTGGCTTT----T-GCAGTAGCAGTAGCAGCAGCAA  Raphanus raphanistrum subsp. maritimus
EV529430       --> CACTTGTTGTTGAATTGGCTTT----T-GCAGTAGCAG------CAGCAA  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN22208        --> CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
EV524430       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
EX754051       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus var. oleiformis
EW713451       <-- CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus var. oleiformis
EV536004       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGAT---GGCTCGTCATATGTA  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
FD980022       <-- CAACAGGCTTAGTAGTAGAGGATGGTGGGGATGGTGGCTCGTCATACGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus cv Early Scarlet Globe
FD975978       --> CAACAGGCTTAGTAGTAGA...............................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> CAACAGGCTT........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> CAACAGGCTTAGTAGTAAAGGACGGGGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus cv Early Scarlet Globe
EW730622       --> CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGG---CTCGTCATATGTA  Raphanus sativus cv Early Scarlet Globe
EX892853       --> CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus var. oleiformis
EY896546       --> CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
EW718345       --> CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus var. oleiformis
EW718606       --> CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus sativus var. oleiformis
EX758459       --> CAACAGGCTTAGTAG...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
FD532796       --> CGACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus
EV529430       --> CAACAGGCTTAGTAGTAGAGGACGGTGGGGATGGTGGCTCGTCATATGTA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN22208        --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EV524430       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EX754051       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW713450       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW713451       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EV536004       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
FD544017       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW726467       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EY901177       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
FD980022       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW725667       <-- TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAAAAAATGAACC
EW730622       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EX892853       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EY896546       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW718345       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EW718606       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EX758459       --> ..................................................
FD528658       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
FD532796       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC
EV529430       --> TAATCATCATCACCGGGAGGTTGTGGAGGAAGTGGTGAAGAAGATGAACC

               601    -    651
UN22208        --> ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
EV524430       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ATGATCTGAAGGACCTTCAGGATTCATGAT--ATGTGTAACTGCTAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus var. oleiformis
EW713451       <-- ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus var. oleiformis
EV536004       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
FD980022       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus cv Early Scarlet Globe
EW730622       --> ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus cv Early Scarlet Globe
EX892853       --> ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus var. oleiformis
EY896546       --> ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
EW718345       --> ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus var. oleiformis
EW718606       --> ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus sativus var. oleiformis
EX758459       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
FD532796       --> ATGATCTGAAGGACCACCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus
EV529430       --> ATGATCTGAAGGACCTTCAGGATTCATGATAGGTATGTAACTGCTAATAT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN22208        --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EV524430       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EX754051       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW713450       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW713451       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EV536004       <-- GAAGCGCGGAGGTGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
FD544017       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW726467       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EY901177       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
FD980022       <-- GAAGCACGGAGATGTTATAAGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW725667       <-- GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAAC................
EW730622       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EX892853       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EY896546       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW718345       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EW718606       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EX758459       --> ..................................................
FD528658       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
FD532796       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA
EV529430       --> GAAGCACGGAGATGTTATACGGATGTGTCGCAACAGAGTCTATAAGCTTA

               701    -    751
UN22208        --> GCGTCAAGGATAGATCCGGGAACCGCGGATCCGAACATGACGTCGCCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- GCGTCAAGGATAGATCCACGAACCGCGGATCCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
EV524430       <-- GCGTCAAGGATAGATCCACGAACCGCGGATCCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
EX754051       <-- GCGTCAAGGATAGATCTGGGAACCGCGGATCCGAACATAACGTCGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- GCGTCAAGGATAGATCCGGGAACCGCGGGACCGAACATGACGTCGCCGTT  Raphanus sativus var. oleiformis
EW713451       <-- GCGTCAAGGATAGATCCGGGAACCGCGGGACCGAACATGACGTCGCCGTT  Raphanus sativus var. oleiformis
EV536004       <-- GCGTCAAGGATAGATCCGGGAACCGCGGATCCGAACATAACGTCGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- GCGTCAAGGATAGATCCACGAACCGCGGATCCGAACATAACGTCGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- GCGTCAAGGATAGATCCGTGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- GCGTCAAGGATAGATCCGGGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
FD980022       <-- GCGTCAAGGATAGATCCGGGAACCGCGGATCCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- GCGTCAAGGATAGATCCGTGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730622       --> GCGTCAAGGATAGATCCGTGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus sativus cv Early Scarlet Globe
EX892853       --> GCGTCAAGGATAGATCCGGGAACCGCG.......................  Raphanus sativus var. oleiformis
EY896546       --> GCGTCAAGGATAGATCCGGGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
EW718345       --> GCGTCAAGGATAGATCCGGGAACCGCGGGACCGAACATGACGTCGCCGTT  Raphanus sativus var. oleiformis
EW718606       --> GCGTCAAGGATAGATCCGGGAACCGCGGGACCGAACATGACGTCGCCGTT  Raphanus sativus var. oleiformis
EX758459       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> GCGTCAAGGATAGATCCACGAACCGCGGATCCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
FD532796       --> GCATCAAGGATAGATCCGGGAACCGCGGAACCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus
EV529430       --> GCGTCAAGGATAGATCCACGAACCGCGGATCCGAACATGACGTCGCCGTT  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN22208        --> GCTCATAACGGTTGCGTTTATGAAACCTTGCTGGCCTTTGGCTTGACCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- GCTCATAACGGTCGCGTTTATGAACCCTTGCTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
EV524430       <-- GCTCATAACGGTCGCGTTTATGAACCCTTGCTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
EX754051       <-- GCTCATAACGGTTGCGTTTACGAACCCTTGCTGGCCTTTGGCCTGACCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus sativus var. oleiformis
EW713451       <-- GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus sativus var. oleiformis
EV536004       <-- GCTCATAACGGTTGCGTTTACGAACCCTTGCTGGCCTTTGGCCTGACCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- GCTCATAACGGTTGCGTTTATGAAACCTTGCTGGCCTTTCGCTTGACCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- GCTCATAACGGTCGCGTTTATGAAACCTTGCTGGCCTTTGGCTTGACCGC  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
FD980022       <-- GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- GCTCATAACGGTCGCGTTTATGAAACCTTGCTGGCCTTTGGCTTGACCGC  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730622       --> GCTCATAACGGTCGCGTTTATGAAACCTTGCTGGCCTTTGGCTTGACCGC  Raphanus sativus cv Early Scarlet Globe
EX892853       --> ..................................................  Raphanus sativus var. oleiformis
EY896546       --> GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
EW718345       --> GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus sativus var. oleiformis
EW718606       --> GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus sativus var. oleiformis
EX758459       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> GCTCATAACGGTCGCGTTTATGAACCCTTGCTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
FD532796       --> GCTCATAACGGTTGCGTTTATGAAACCTTGTTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus
EV529430       --> GCTCATAACGGTCGCGTTTATGAACCCTTGCTGGCCTTTGGCTTGACCGC  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN22208        --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTTAGGTTCTTG
EV524430       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTTAGGTTCTTG
EX754051       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EW713450       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EW713451       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EV536004       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
FD544017       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EW726467       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EY901177       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
FD980022       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EW725667       <-- TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> TTGATg............................................
EX892853       --> ..................................................
EY896546       --> TTGA..............................................
EW718345       --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EW718606       --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAG-TTCTTG
EX758459       --> ..................................................
FD528658       --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTTAGGTTCTTG
FD532796       --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTGAGGTTCTTG
EV529430       --> TTGATTGGAAGAGAGTGGTGAGTATTACTGATTTTTTGTTTAGGTTCTTG

               851    -    901
UN22208        --> AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EV524430       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EX754051       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EW713450       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EW713451       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EV536004       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
FD544017       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EW726467       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EY901177       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
FD980022       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EW725667       <-- AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> ..................................................
EX892853       --> ..................................................
EY896546       --> ..................................................
EW718345       --> AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTG...............
EW718606       --> AGTTTCTTG.........................................
EX758459       --> ..................................................
FD528658       --> AGTTTCTTGATGTCGTAGTAATCTAGAATGACGT................
FD532796       --> AGTTTCTTGATGTCGTAGTAATCTAGAATGACGTGGAGGCTGAGGATTTT
EV529430       --> AGTTTCTTGATGT.....................................

               901    -    951
UN22208        --> CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- CTTGTTGTCTTCGGTTGc................................
EV524430       <-- CTTGTTGTCTTCGGTTGc................................
EX754051       <-- CTTGTTGTCTTCAGTTGATTGc............................
EW713450       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
EW713451       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
EV536004       <-- CTTGTTGTCTTCAGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
FD544017       <-- CTTGTTTTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
EW726467       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
EY901177       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
FD980022       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
EW725667       <-- CTTGTTGTCTTCGGTTGATTGGTCGGAGAAAACGGACACTGCGTCGTTGG
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> ..................................................
EX892853       --> ..................................................
EY896546       --> ..................................................
EW718345       --> ..................................................
EW718606       --> ..................................................
EX758459       --> ..................................................
FD528658       --> ..................................................
FD532796       --> C.................................................
EV529430       --> ..................................................

               951    -   1001
UN22208        --> AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................
EV524430       <-- ..................................................
EX754051       <-- ..................................................
EW713450       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
EW713451       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
EV536004       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
FD544017       <-- AGAGGGCGAGGACGGTTATGGTTTGGCGGGAGTTGATGGTGGAAGCGAGT
EW726467       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
EY901177       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
FD980022       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
EW725667       <-- AGAGGGCGAGGACGGTTATGGTTTGACGGGAGTTGATGGTGGAAGCGAGT
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> ..................................................
EX892853       --> ..................................................
EY896546       --> ..................................................
EW718345       --> ..................................................
EW718606       --> ..................................................
EX758459       --> ..................................................
FD528658       --> ..................................................
FD532796       --> ..................................................
EV529430       --> ..................................................

               1001   -   1051
UN22208        --> CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524430       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus sativus var. oleiformis
EW713451       <-- CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus sativus var. oleiformis
EV536004       <-- CCGGTTTGGGAGAGAAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- CCGGTTTGGGAGAGAAGGTTGTTGAAAGTGGAGAACTCATTGTTCAGGTT  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus raphanistrum subsp. maritimus
FD980022       <-- CCGGTTTGGGAGAGGAGGTTGTTGAAAGTGGAGAACTCGTTGTTCAGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- CCGGTTTGGGAGAGAAGGTTGTTGAAAGTGGAGAACTCATTGTTCAGGTT  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730622       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892853       --> ..................................................  Raphanus sativus var. oleiformis
EY896546       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW718345       --> ..................................................  Raphanus sativus var. oleiformis
EW718606       --> ..................................................  Raphanus sativus var. oleiformis
EX758459       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD532796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529430       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN22208        --> TAAGATGCGTGTGATGTTGAATGCGTGTGCATTGAGGAATGTAGAAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV524430       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX754051       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW713450       <-- TAAGATGCGTGTGATGTTGAATGCGTGGGCATTGAGGAATGTAGAAGCAA  Raphanus sativus var. oleiformis
EW713451       <-- TAAGATGCGTGTGATGTTGAATGCGTGGGCATTGAGGAATGTAGAAGCAA  Raphanus sativus var. oleiformis
EV536004       <-- TAAGATGCGTGTGATGTTGAATGCGTGTGCATTGAGGAATGTAGAAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544017       <-- TAAGATGCGTGTGATGTTGAATGCATGTGCATTGAGGAATGTAAAAGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW726467       <-- TAAGATGCGTGTGATGTTGAATGCGTGTGCATTGAGGGACGTAGAAGCAA  Raphanus sativus cv Early Scarlet Globe
EY901177       <-- TAAGATGCGTGTGATGTTGAATGCGTGGGCATTGAGGAATGTAGAAGCAA  Raphanus raphanistrum subsp. maritimus
FD980022       <-- TAAGATGCGTGTGATGTTGAATGCATGTGCATTGAGGAATGTAAAAGCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW725667       <-- TAAGATGCGTGTGATGTTGAATGCGTGTGCATTGAGGGACGTAGAAGCAA  Raphanus sativus cv Early Scarlet Globe
FD975978       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540544       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW730101       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730622       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892853       --> ..................................................  Raphanus sativus var. oleiformis
EY896546       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW718345       --> ..................................................  Raphanus sativus var. oleiformis
EW718606       --> ..................................................  Raphanus sativus var. oleiformis
EX758459       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD528658       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD532796       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV529430       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN22208        --> AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAAGAAGAAGAAGAAGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- ..................................................
EV524430       <-- ..................................................
EX754051       <-- ..................................................
EW713450       <-- AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAAGAAGAcattgtgtccccc
EW713451       <-- AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAAGAAGAcattgtgtccccc
EV536004       <-- AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAGGAAGAAGAAaacattgtg
FD544017       <-- AGAAGAAGAAGAGCGTAAGTGAAGCAGAAGAAGAAGAAGAAGAAGAcatt
EW726467       <-- AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAAGAAGAtgacattgtgtgg
EY901177       <-- AGAAGAAGAAGAGTGTAAGTGAAGCAGAAGAAGAAGAcattgtgtcc...
FD980022       <-- AGAAGAAGAAGAGCGTAAGTGAAGCAGAAGAAGAAGAAGAAGAAGAAGAA
EW725667       <-- AGAAGAAGAAGAGTGTGAGTGAAGCAGAAGAAGAAGAtgacattgtgtgg
FD975978       --> ..................................................
EV540544       --> ..................................................
EW730101       --> ..................................................
EW730622       --> ..................................................
EX892853       --> ..................................................
EY896546       --> ..................................................
EW718345       --> ..................................................
EW718606       --> ..................................................
EX758459       --> ..................................................
FD528658       --> ..................................................
FD532796       --> ..................................................
EV529430       --> ..................................................

               1151   -   1201
UN22208        --> GAAGACATTGTGTGGATTTCC
                   ~~~~~~~~~~~~~~~~~~~~~
FD532101       <-- .....................
EV524430       <-- .....................
EX754051       <-- .....................
EW713450       <-- .....................
EW713451       <-- .....................
EV536004       <-- tggatttcc............
FD544017       <-- gtgtggatttcc.........
EW726467       <-- atttcc...............
EY901177       <-- .....................
FD980022       <-- GAAGACATTGTGTGGATTTCC
EW725667       <-- atttcc...............
FD975978       --> .....................
EV540544       --> .....................
EW730101       --> .....................
EW730622       --> .....................
EX892853       --> .....................
EY896546       --> .....................
EW718345       --> .....................
EW718606       --> .....................
EX758459       --> .....................
FD528658       --> .....................
FD532796       --> .....................
EV529430       --> .....................