Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN22256

               -2     -     48
UN22256        --> ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
EY919204       <-- ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
FD958535       <-- ...GGACCCAAGTTTCTGAAAACTGAAAGAAGCAATAA-CTAAGTGTAAA  Raphanus raphanistrum subsp. maritimus
EY912708       <-- ggatcACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY920307       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW722644       --> ...GGACCCAAGTTTCTGAAAACTGAAAGAAGCAATAA-CTAAGTGTAAA  Raphanus sativus cv Early Scarlet Globe
EW722645       --> ...GGACCCAAGTTTCTGAAAACTGAAAGAAGCAATAA-CTAAGTGTAAA  Raphanus sativus cv Early Scarlet Globe
EX771917       --> ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
EX773896       --> ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
EY923408       --> ...GGACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
FD961859       --> ...GGACCCAAGTTTCTGAAAACTGAAAGAAGCAATAA-CTAAGTGTAAA  Raphanus raphanistrum subsp. maritimus
EY923399       --> ....GACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
EY924698       --> ....GACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. landra
EY917146       --> ggatcACCCAAGTTTCTGAAAAAAGAAAGAAGCAATAAACTAAGTGCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               48     -     98
UN22256        --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY919204       <-- AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
FD958535       <-- AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY912708       <-- AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY919192       <-- ..................................................
EY920307       <-- ..................................................
EW722644       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EW722645       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EX771917       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EX773896       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY923408       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
FD961859       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY923399       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY924698       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
EY917146       --> AAGAAGAAGCAAAAGCTACAAAATGGCAAAAACCCTCAGTTCCATCTGCT
FD541619       --> ..................................................

               98     -    148
UN22256        --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY919204       <-- TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
FD958535       <-- TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCTGAAG
EY912708       <-- TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY919192       <-- TCACCACTTTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY920307       <-- TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EW722644       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EW722645       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EX771917       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EX773896       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY923408       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
FD961859       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCTGAAG
EY923399       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY924698       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
EY917146       --> TCACCACTCTCCTGCTCGTTGTCTTGTTGATTTCAGCTGGTATCCCGAAG
FD541619       --> ..................................................

               148    -    198
UN22256        --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EY919204       <-- AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
FD958535       <-- AGCGAGGCCACGTGTACGAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. maritimus
EY912708       <-- AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- AGGGAGGGGACGTGTACCAAGTACTTAGGGGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EY920307       <-- AGCGAGGCGACGTGTACCAAGTACTTAGGGGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EW722644       --> AGCGAGGCCACGTGTACGAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus sativus cv Early Scarlet Globe
EW722645       --> AGCGAGGCCACGTGTACGAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus sativus cv Early Scarlet Globe
EX771917       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EX773896       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EY923408       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
FD961859       --> AGCGAGGCCACGTGTACGAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. maritimus
EY923399       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EY924698       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. landra
EY917146       --> AGCGAGGCGACGTGTACCAAGTACTTAGGCGAAGCCATATTGCCGTACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               198    -    248
UN22256        --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY919204       <-- ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
FD958535       <-- ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY912708       <-- ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY919192       <-- ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY920307       <-- ATGCAGGGAAAGTTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EW722644       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EW722645       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EX771917       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EX773896       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY923408       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
FD961859       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY923399       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY924698       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
EY917146       --> ATGCAGGGAAAGCTACTGTGAAGCCAAATGCGCTGAGATTTACCACGAGT
FD541619       --> ...gAGGGAAAGCTACTGCGAAGCCAAATGCGCTGAGATTTACCACGAGT

               248    -    298
UN22256        --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY919204       <-- CATGCAGAGGAGAGTGAGAGGATCATGATCATCACCACGGAGTGCATTTA
FD958535       <-- CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY912708       <-- CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY919192       <-- CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY920307       <-- CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EW722644       --> CATACAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EW722645       --> CATACAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EX771917       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EX773896       --> CATTCATAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY923408       --> CATGCAGAGGAGAGTGAGAGGATCATGATCATCACCACGGAGTGCATTTA
FD961859       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY923399       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY924698       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
EY917146       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA
FD541619       --> CATGCAGAGGAGAGTGTGAGGATCATGATCATCACCACGGAGTGCATTTA

               298    -    348
UN22256        --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EY919204       <-- ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
FD958535       <-- ACAAATGACCATGACGACCATTGCTACTGCTACGGTCGTTATTAAGCAGC  Raphanus raphanistrum subsp. maritimus
EY912708       <-- ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EY920307       <-- ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EW722644       --> ACAAATGACCATGACGACCATTGCTACTGCTACGGTCGTTATTAAGCAGC  Raphanus sativus cv Early Scarlet Globe
EW722645       --> ACAAATGACCATGACGACCATTGCTACTGCTACGGTCGTTATTAAGCAGC  Raphanus sativus cv Early Scarlet Globe
EX771917       --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EX773896       --> ACAAGTGACCATGACGACCATTTCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EY923408       --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
FD961859       --> ACAAATGACCATGACGACCATTGCTACTGCTACGGTCGTTATTAAGCAGC  Raphanus raphanistrum subsp. maritimus
EY923399       --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EY924698       --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. landra
EY917146       --> ACAAATGACCATGACGACCATTGCTACTGCTACAGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> ACAAATGACCATGACGACCATTGCTACTGCTACGGTCGTTATTAAGCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               348    -    398
UN22256        --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY919204       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
FD958535       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY912708       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY919192       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY920307       <-- TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EW722644       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EW722645       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EX771917       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EX773896       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY923408       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
FD961859       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY923399       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY924698       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
EY917146       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT
FD541619       --> TGATGAAGTTTACTCATAAACTCGTACCGTATTAAATAAAATAAAAATGT

               398    -    448
UN22256        --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EY919204       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
FD958535       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCGTGTGCG--AGTGTTGTTT  Raphanus raphanistrum subsp. maritimus
EY912708       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EY920307       <-- AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EW722644       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGCG--AGTGTTGTTT  Raphanus sativus cv Early Scarlet Globe
EW722645       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGCG--AGTGTTGTTT  Raphanus sativus cv Early Scarlet Globe
EX771917       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EX773896       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EY923408       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
FD961859       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCGTGTGCG--AGTGTTGTTT  Raphanus raphanistrum subsp. maritimus
EY923399       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EY924698       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. landra
EY917146       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTG--AGTGTTGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> AAGCGTGGTGGTTTCCTTCGATTTAAGTGTCATGTGTGTGAGTGTTGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               448    -    498
UN22256        --> GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- GCT--T-TTT-TTTT---ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EY919204       <-- GCT--T-TTT-TTTT---ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
FD958535       <-- GCTGCTCTTTCTTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. maritimus
EY912708       <-- GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EY920307       <-- GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EW722644       --> GCTGCTCTTTCTTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus sativus cv Early Scarlet Globe
EW722645       --> GCTGCTCTTTCTTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus sativus cv Early Scarlet Globe
EX771917       --> GCT--T-TTT-TTTT---ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EX773896       --> GCT--T-TTT-TTTT---ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EY923408       --> GCT--T-TTT-TTTT---ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
FD961859       --> GCTGCTCTTTCTTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. maritimus
EY923399       --> GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EY924698       --> GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. landra
EY917146       --> GCT--T-TTT-TTTTT--ATAATTAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> GCT--T-TTT-TTTTTTTATAATAAAATAAAATAGTACGTAAGACGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               498    -    548
UN22256        --> TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
EY919204       <-- TAATGACTTCTCTCCTGCGTCTATTATAAGATCAT...............  Raphanus raphanistrum subsp. landra
FD958535       <-- TAATGACTTCTCTCCTACGTCTATTATAATATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. maritimus
EY912708       <-- TAATGACTTCTCTCCTGCGTCTATTGTAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY919192       <-- TAATGACT..........................................  Raphanus raphanistrum subsp. landra
EY920307       <-- TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
EW722644       --> TAATGACTTCTCTCCTACGTCTATTATAATATCATGTTGTATGTTATTTC  Raphanus sativus cv Early Scarlet Globe
EW722645       --> TAATGACTTCTCTCCTACGTCTATTATAATATCATGTTGTATGTTATTTC  Raphanus sativus cv Early Scarlet Globe
EX771917       --> TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
EX773896       --> TAATGACTTCTCTCCTGCGTCTATTATAAGAT..................  Raphanus raphanistrum subsp. landra
EY923408       --> TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
FD961859       --> TAATGACTTCTCTCCTACGTCTATTATAATATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. maritimus
EY923399       --> TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
EY924698       --> TAATGACTTCTCTCCTGCGTCTATTATAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. landra
EY917146       --> TAATGACTTCTCTCCTGCGTCTATTGTAAGATCATGTTGTATGTTATTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541619       --> TAATGACTTCTCTCCTACGTCTATTATAAGATCATGTTGTCTGTTATTTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               548    -    598
UN22256        --> GATTTGATAATAATAAAAAAAACTTATTTTGTGTGTGG.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX775986       <-- GATTTGATAATAATAAAgttgttctgtattttggcg...
EY919204       <-- .......................................
FD958535       <-- GATTTGATAATAATAAAAAAAACTTATTTTGTGTGTGG.
EY912708       <-- GATTTGATAATAATAAAgttgttctgtattttggct...
EY919192       <-- .......................................
EY920307       <-- GATTTGATAATAATAAAgttgttctgtattttggcc...
EW722644       --> GATTTGATAATAATAAAAAAAACTTATTTTGTGTGTGtt
EW722645       --> .......................................
EX771917       --> GATTTGATAATAATAAAgttgttctgtattttggcg...
EX773896       --> .......................................
EY923408       --> GATTTGATAATAATAAAgttgttct..............
FD961859       --> GATTTGATAATAATAAAAAAAACTTATTTTGTGTGTGG.
EY923399       --> GATTTGATAATAATAAAgttgttctgtattttggcc...
EY924698       --> GATTTGATAATAATAAAgttgttctgtattttggcc...
EY917146       --> GATTTGATAATAATAAAgttgttctgtattttggct...
FD541619       --> GATTTGATAATAATAAAgttgttttgtgttttgact...