1      -     51
UN22311        --> GGATCTGCGAACCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- GGATCTGCGAACCAACCCCAACCCTCTCCGAAGATCAAACCAAAAACCCT
EX891839       <-- ..................................................
FD566658       <-- ..................................................
EY936707       <-- ..................................................
EV570953       <-- ..................................................
EW729580       <-- ..................................................
EW722994       --> GGATCTGCGAACCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
EW726903       --> GGATCTGCGAACCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
EY900173       --> GGATCTGCGAACCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
EY941054       --> GGATCTGCGAACCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
FD562853       --> GGATCTGCGAGCCAACCC-AACCCTCTCCGAAGATCAAACCAAAAACCCT
FD971573       --> ....ggGCGAACCAACCC-AACCCTCTCCGAAGATCAAGCCAAAAACCCT
EW723026       --> ..................................................
EX887766       --> ..................................................

               51     -    101
UN22311        --> AGCTA-GCACAGGCAGCAGC---GAGGA---CTAATCTCACGCCCTATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- AGCTA-GCACAAGCAGCAGC---GAGGA---CTAATCTCACGCCCTATGG  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- ..taA-GCACAGGCAGCAGC---GAGGAGGACTAATCTCACG--CTATGG  Raphanus sativus var. oleiformis
FD566658       <-- ......GCACAGGCAGCAGC---GAGGAGGACTAATCTCACG--CTATGG  Raphanus sativus var. oleiformis
EY936707       <-- .................................AATCTCACGCCCTATGG  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW729580       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722994       --> AGCTA-GCACAAGCAGCAGC---GAGGA---CTAATCTCACGCCCTATGG  Raphanus sativus cv Early Scarlet Globe
EW726903       --> AGCTA-GCACAAGCAGCAGC---GAGGA---CTAATCTCACGCCCTATGA  Raphanus sativus cv Early Scarlet Globe
EY900173       --> AGCTAAGCACAGGCAGCAGCAAGGAGGA---CCAATCTCACGC--TATGG  Raphanus raphanistrum subsp. maritimus
EY941054       --> AGCTA-GCACAAGCAGCAGC---GAGGA---CTAATCTCACGCCCTATGG  Raphanus sativus cv Early Scarlet Globe
FD562853       --> AGCTAAGCACAGGCAGCAGC---GAGGAGGACTAATCTCACGC--TATGG  Raphanus sativus var. oleiformis
FD971573       --> AGCTA-GCACAGGCAGCAGC---GAGGA---CTAATCTCACGC--TATGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX887766       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN22311        --> CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-GGACCCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- CTTCGAGAAGAATTAACAAGGAACTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus sativus var. oleiformis
FD566658       <-- CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-TGACCCTCC  Raphanus sativus var. oleiformis
EY936707       <-- CTTCGAGAAGAATTAACAAGGAACTTAGAGACCTGCAAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- ............TTAACAAGGAGCTTAGGGACCTGCAAAAAGGACCCTCC  Raphanus raphanistrum subsp. landra
EW729580       <-- ....................................AAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
EW722994       --> CTTCGAGAAGAATTAACAAGGAACTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
EW726903       --> CTTCGAGAAGAATTAACAAGGAACTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
EY900173       --> CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus raphanistrum subsp. maritimus
EY941054       --> CTTCGAGAAGAATTAACAAGGAACTTAGAGACCTGCAAAA-GGACCCTCC  Raphanus sativus cv Early Scarlet Globe
FD562853       --> CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-TGACCCTCC  Raphanus sativus var. oleiformis
FD971573       --> CTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAA-GGACCCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX887766       --> ..................................................  Raphanus sativus var. oleiformis

               151    -    201
UN22311        --> TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- TGTCTCTTGCAGCGCCGGTCCTGTGGGTGATGA--TGTACCACTGGCAAG  Raphanus sativus var. oleiformis
FD566658       <-- TGTCTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus var. oleiformis
EY936707       <-- TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus raphanistrum subsp. landra
EW729580       <-- TGTGTCTTGCAGCGCCGGTCCTGTGGGTTATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EW722994       --> TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EW726903       --> TGTGTCTTGCAGCGCCGGTCCTGTGGGTTATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EY900173       --> TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus raphanistrum subsp. maritimus
EY941054       --> TGTGTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
FD562853       --> TGTCTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus sativus var. oleiformis
FD971573       --> TGTCTCTTGCAGCGCCGGTCCTGTGGGTGATGATATGTACCACTGGCAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> .........................GGTTATGATATGTACCACTGGCAAG  Raphanus sativus cv Early Scarlet Globe
EX887766       --> ..................................................  Raphanus sativus var. oleiformis

               201    -    251
UN22311        --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EX891839       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
FD566658       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EY936707       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EV570953       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EW729580       <-- CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EW722994       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EW726903       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EY900173       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EY941054       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
FD562853       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
FD971573       --> CAACTATTATGGGTCCGACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EW723026       --> CAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT
EX887766       --> ..................................................

               251    -    301
UN22311        --> GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCAAAGGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- GTTTCCATTCACTTCCCACCAGATTACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTC  Raphanus sativus var. oleiformis
FD566658       <-- GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTC  Raphanus sativus var. oleiformis
EY936707       <-- GTTTCCATTCACTTCCCACCAGATCACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTC  Raphanus raphanistrum subsp. landra
EW729580       <-- GTTTCCATTCACTTCCCACCAGATTACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EW722994       --> GTTTCCATTCACTTCCCACCAGATTACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EW726903       --> GTTTCCATTCACTTCCCACCAGATTACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EY900173       --> GTTTCCATTCACTTCCCTCCTGATTACCCCTTCAAGCCACCAAAGGTTTC  Raphanus raphanistrum subsp. maritimus
EY941054       --> GTTTCCATTCACTTCCCACCAGATCACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
FD562853       --> GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTC  Raphanus sativus var. oleiformis
FD971573       --> GTTTCCATTCACTTCCCTCCAGATTATCCCTTCAAGCCACCAAAGGTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> GTTTCCATTCACTTCCCACCAGATTACCCCTTCAAACCACCAAAGGTTTC  Raphanus sativus cv Early Scarlet Globe
EX887766       --> ...TCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTC  Raphanus sativus var. oleiformis

               301    -    351
UN22311        --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EX891839       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
FD566658       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EY936707       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EV570953       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EW729580       <-- TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EW722994       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EW726903       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EY900173       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCTGCATCT
EY941054       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
FD562853       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
FD971573       --> CTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGTATCT
EW723026       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT
EX887766       --> TTTCCGCACCAAGGTTTATCACCCGAATGTCAACAGTAATGGCAGCATCT

               351    -    401
UN22311        --> GTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- GTCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- GTCTTGACATTTTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus var. oleiformis
FD566658       <-- GTCTTGACATTTTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus var. oleiformis
EY936707       <-- GTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- GTCTTGACATTTTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus raphanistrum subsp. landra
EW729580       <-- GTCTTGACATTCTGAAAGAGCAGTGGGGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EW722994       --> GTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EW726903       --> GTCTTGACATTCTGAAAGAGCAGTGGGGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EY900173       --> GTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG  Raphanus raphanistrum subsp. maritimus
EY941054       --> GTCTTGACATTCTGAAAGAGCAGTGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
FD562853       --> GTCTTGACATTCTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus var. oleiformis
FD971573       --> GTCTTGACATTCTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> GTCTTGACATTCTGAAAGAGCAGTGGGGCCCTGCACTTACCCTATCCAAG  Raphanus sativus cv Early Scarlet Globe
EX887766       --> GTCTTGACATTCTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAG  Raphanus sativus var. oleiformis

               401    -    451
UN22311        --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EX891839       <-- GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
FD566658       <-- GTTTTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EY936707       <-- GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EV570953       <-- GTTTTTCTGTCGATATGCTCATTGCTGACAGGTCCAAACCCTGATGATCC
EW729580       <-- GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EW722994       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EW726903       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EY900173       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTTATGATCC
EY941054       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
FD562853       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
FD971573       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EW723026       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC
EX887766       --> GTTCTTCTGTCGATATGCTCATTGCTGACAGATCCAAACCCTGATGATCC

               451    -    501
UN22311        --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- TCTTGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus var. oleiformis
FD566658       <-- T-TTGTTCCTGAAATAGCTAACATTTACAAGACAGACCGTACCAAGTACG  Raphanus sativus var. oleiformis
EY936707       <-- TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- TCTGGTTCCTGAAATAGCTAACATTTACAAGACAGACCGTCCCAAGTACG  Raphanus raphanistrum subsp. landra
EW729580       <-- TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EW722994       --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EW726903       --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EY900173       --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus raphanistrum subsp. maritimus
EY941054       --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
FD562853       --> T-TTGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus var. oleiformis
FD971573       --> TCTTGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> TCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACG  Raphanus sativus cv Early Scarlet Globe
EX887766       --> TCTTGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTAC........  Raphanus sativus var. oleiformis

               501    -    551
UN22311        --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EX891839       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
FD566658       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EY936707       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EV570953       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EW729580       <-- AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EW722994       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EW726903       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EY900173       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EY941054       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
FD562853       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
FD971573       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EW723026       --> AGAACACTGCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGG
EX887766       --> ..................................................

               551    -    601
UN22311        --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EX891839       <-- TTGGCAATAATGGATCCGCACCAGTAAATTGCGCATTT-GTTCTAAGAAT  Raphanus sativus var. oleiformis
FD566658       <-- TTGGCAATAATGGATCCGCACCAGTAAATTGCGCATTT-GTTTTAAGAAT  Raphanus sativus var. oleiformis
EY936707       <-- TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTTTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EV570953       <-- TTGGCAATAATGgatccg................................  Raphanus raphanistrum subsp. landra
EW729580       <-- TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTTTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EW722994       --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EW726903       --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EY900173       --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus raphanistrum subsp. maritimus
EY941054       --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus sativus cv Early Scarlet Globe
FD562853       --> TTGGCAATAATGGATCCGCACCAGTAAATTGCGCATTT-GTTCTAAGAAT  Raphanus sativus var. oleiformis
FD971573       --> TTGGCAACAATG-ATCCGCACCAGTAAATTGCGCATTT-G-TCTAAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW723026       --> TTGGCAATAATG-ATTCGCACCAGTAAATTGCGCATTTCGTTCTAAGAAT  Raphanus sativus cv Early Scarlet Globe
EX887766       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN22311        --> TGGAGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TGGGGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
EX891839       <-- TGGAGAAATAATAAAGAAAAAAA-CATGAATTTGGCTTTTGCTTGGTTGC
FD566658       <-- TGGAGAAATAATAAAGAAAAAAA-CATGAATTTGGCTTTTGCTTGGTTGC
EY936707       <-- TGGAGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
EV570953       <-- ..................................................
EW729580       <-- TGGAGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
EW722994       --> TGGGGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
EW726903       --> TGGAGAAATAATAAAGAAAAAAA-CATGAATTTGGCTTTTGCTTGGTTGC
EY900173       --> TGGAGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCT-AGTTGC
EY941054       --> TGGAGAAATAATAAAGAAAAAAA-CATGAATTTGGCTTTTGCTTGGTTGC
FD562853       --> TGGAGAAATAATAAAGAAAAAAA-CATGAATTTGGCTTTTGCTTGGTTGC
FD971573       --> TGGAGA............................................
EW723026       --> TGGAGAAATAATAAAGAAAAAAAACATGAATTTGGCTTTTGCTTGGTTGC
EX887766       --> ..................................................

               651    -    701
UN22311        --> TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EX891839       <-- TTGATTTAATTAGCTTTATTAACTTCTTATTAAGCCATGTTTTGGTTGTG
FD566658       <-- TTGATTTAATTAGCTTTATTATTTTCTTATTAAGCCATGTTTTGGTTGTG
EY936707       <-- TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EV570953       <-- ..................................................
EW729580       <-- TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EW722994       --> TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EW726903       --> TTGATTTAATTAGCTTTATTATCTTGTTATa...................
EY900173       --> TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EY941054       --> TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
FD562853       --> TTGATTTAATTAGCTTTATTATCTTCTTATTAAGCCATGTT.........
FD971573       --> ..................................................
EW723026       --> TTGATTTAATTAGCTTTATTATCTTGTTATTAAGCCATGTTTTGGTTGTG
EX887766       --> ..................................................

               701    -    751
UN22311        --> TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGATATTTGCAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- TACATGAGCTTTTATTGAAACCTTATTG......................
EX891839       <-- TACATGA...........................................
FD566658       <-- TACATGAGCTTCTATAAAAACCTTATTGAAACATTTGATATTTGCAATGC
EY936707       <-- TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGATATTTGCAATGC
EV570953       <-- ..................................................
EW729580       <-- TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGAT...........
EW722994       --> TACATGAGCTTTTATTGAAACCTTATTG......................
EW726903       --> ..................................................
EY900173       --> TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGATATTTGCAATGC
EY941054       --> TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGATATTTGCAATGC
FD562853       --> ..................................................
FD971573       --> ..................................................
EW723026       --> TACATGAGCTTTTATTGAAACCTTATTGAAACATTTGAT...........
EX887766       --> ..................................................

               751    -    801
UN22311        --> TTTTAAGCAAGTGGTTGGCTATTATAAT.
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727806       <-- .............................
EX891839       <-- .............................
FD566658       <-- TTTTAAGCAAGTGGTTGGCTATTATAATg
EY936707       <-- c............................
EV570953       <-- .............................
EW729580       <-- .............................
EW722994       --> .............................
EW726903       --> .............................
EY900173       --> TTTTAAGCAAa..................
EY941054       --> c............................
FD562853       --> .............................
FD971573       --> .............................
EW723026       --> .............................
EX887766       --> .............................