Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN22392

               1      -     51
UN22392        --> GCAATCAAAATTGTTATTTACTATATTACTTTGGTTAACATGTTAGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- .....................................ACATGTTAGAACA
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- ..................................................
EY902473       --> GCAATCAAAATTGTTATTTACTATATTACTTTGGTTAACATGTTAGAACA
EY935216       --> GCAATCAAAATTGTTATTTACTATATTACTTTGGTTAACATGTTAGAACA
EX777023       --> aCAATCAAAATTGTTATTTACTATATTACTTTGGTTAACATGTTAGAACA

               51     -    101
UN22392        --> TTACCAGACAACATAGTACTTATCTTTTTACTAATTGTAGAAAAGTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TTACCAGACAACATAGTACT--TCTTTTTACTAATTGTAGAAAAGTACTA
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- ..................................................
EY902473       --> TTACCAGACAACATAGTACTTATCCTTTTACTAATTGTAGAAAAGTACTA
EY935216       --> TTACCAGACAACATAGTACTTATCTTTTTACTAATTGTAGAAAAGTACTA
EX777023       --> TTACCAGACAACATAGTACTTATCTTTTTACTAATTGTAGAAAAGTACTA

               101    -    151
UN22392        --> CTAGTGTCAAGTGTCAACCACTGATTTCTTATATACAGACACATGATATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- CTAGTGTCAAGTGTCAACCACTGATTTCTTATATACAGACACATGATATT
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- ..................................................
EY902473       --> CTAGTGTCAAGTGTCAACCACTGATTTCTTATATACAGACACATGATATT
EY935216       --> CTAGTGTCAA-------CCACTGATTTCTTATATACAGACA--TGATATT
EX777023       --> CTAGTGTCAAGTGTCAACCACCGATTTCTTATATACAGACACGTGATATT

               151    -    201
UN22392        --> TGTTGCAACATGAACTTTACATCTTAATCGAGTTCATCAACAAAACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TGTTGCAACATGAACTTTACATCTTAATCGAGTTCATCAACAAAACCAAT
EY899325       <-- ......................catcttatccagtcaccagcAAACCAAT
EX773189       <-- ..................................................
EY906243       <-- ..................................................
EY902473       --> TGTTGCAACATGAACTTTACATCTTAATCGAGTTCATCAACAAAACCAAT
EY935216       --> TGTTGCAACATGAACTTTACATCTTAATCGAGTTCATCAACAAAACCAAT
EX777023       --> TGTTGCAACATGAACTTTACATCTTAATCCAGTCCATGGACAAAACCAAT

               201    -    251
UN22392        --> TTAGATAAGAATCTGAGACTTTGCTGCGGCCCTAGAGCAACTCTTCCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TTAGATAAGAATCTGAGACTTTGCTGCGGCCCTAGAGCAACTCTTCCGGC
EY899325       <-- T-AGATAAGA-TCTGAGACTTTGCTGCG-CCCTAGAGCAACTCTTCCGCC
EX773189       <-- ..................................................
EY906243       <-- ..................................................
EY902473       --> TTAGATAAGAATCTGAGACTTTGCTGCGGCCCTAGAGCAACTCTTCCGGC
EY935216       --> TTAGATAAGAATCTGAGACTTTGCTGCGGCCCTAGAGCAACTCTTCCGGC
EX777023       --> TTAGATAAGAATCTGAGACTTTGCTGCGGCTCTAGAGCAACTCTTCCGGC

               251    -    301
UN22392        --> CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCAAGATCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCAAGATCTTCT
EY899325       <-- CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCGAGATCTTCT
EX773189       <-- ...........................TCTCTAGAAGCTCAAGATCT-CT
EY906243       <-- ..................................................
EY902473       --> CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCAAGATCTTCT
EY935216       --> CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCAAGATCTTCT
EX777023       --> CTGATTTGGATAGAACACAAACACAAGTCTCTAGAAGCTCAAGATCTTCT

               301    -    351
UN22392        --> TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGTTGCTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGTTGCTTGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899325       <-- TCCCAGAACAGGGAAGATGCCATTTCAGGATTCTGCAATAGCTGCTTGGC  Raphanus raphanistrum subsp. maritimus
EX773189       <-- TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGCTGCTTGGC  Raphanus raphanistrum subsp. landra
EY906243       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902473       --> TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGTTGCTTGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY935216       --> TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGTTGCTTGGC  Raphanus sativus cv Early Scarlet Globe
EX777023       --> TCCCAGAACAAGGAAGATGCCATTTCAGGATTCTGCAATAGCTGCTTGGC  Raphanus raphanistrum subsp. landra

               351    -    401
UN22392        --> TGTCAAGAAACCAGCAATCGTCCATGTCTGGTAAAGCCTGGACTTTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TGTCAAGAAACCAGCAATCGTCCATGTCTGGTAAAGCCTGGACTTTTTTC
EY899325       <-- TGTCAAGAAACCAGCAATCGTCCATGTCTGGTAAAGCCTGGACTTTTTTC
EX773189       <-- TGTCAAGAAACCAGCAATCGTCTATGTCTGGTAAAGCCTAGACTTTTTTC
EY906243       <-- ..................................................
EY902473       --> TGTCAAGAAACCAGCAATTGTCCATGTCTGGTAAAGCCTGGACTTTTTTC
EY935216       --> TGTCAAGAAACCAGCAATCGTCCATGTCTGGTAAAGCCTGGACTTTTTTC
EX777023       --> TGTCAAGAAACCAGCAATCGTCTATGTCTGGTAAAGCCTAAACTTTTTTC

               401    -    451
UN22392        --> CGATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- CTATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT
EY899325       <-- CGATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT
EX773189       <-- CGATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT
EY906243       <-- ..................................................
EY902473       --> CGATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT
EY935216       --> CGATGAACTTCCCGTATCTTGTATCGTAGTGCTCAGGCCACCGGTAAGCT
EX777023       --> CGATGAACTTCCCGTATCTTGTATCGTAGTACTCAGGCCACCGGTCAGCT

               451    -    501
UN22392        --> TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- TGGAGCCTCTTTTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
EY899325       <-- TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
EX773189       <-- TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
EY906243       <-- ..................................................
EY902473       --> TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
EY935216       --> TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT
EX777023       --> TGGAGCCTCTTCTCAGCCAATGCAACTGCTTTCTCTGCTAGCTCTGGTCT

               501    -    551
UN22392        --> ACCCATCTTCATGCATGCCAGTGTGAATTGCCAGAGAAGCGTTGGCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ACCCATCTTCATGCATGCCAATGTGAATTGCCAGAGAAGCGTGGGCCATG
EY899325       <-- ACCCATCTTCATGCATGCCAGTGTGAATTGCCAGAGAAGCGTTGGCCATG
EX773189       <-- ACCCATCTTCATGCATGCCAGTGTGAATTGCCAGAGAAGCGTTGGCCATG
EY906243       <-- ....................GTGTGAATTGCCAAAGAAGCGTTGGCCATG
EY902473       --> ACCCATCTTCATGCATGCCAGTGTGAATTGCCAAAGAAGCGTTGGCCATG
EY935216       --> ACCCATCTTCATGCATGCCAATGTGAATTGCCAGAGAAGTGTTGGCCATG
EX777023       --> ACCCATCTTCATGCATGCCAGTGTGAATTGCCAGAAAAGCGTTGGCCATG

               551    -    601
UN22392        --> ACCCGCCGTTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ACCCGCCATTATGGTAAGACCAAGGCGc......................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY899325       <-- ACCCGCCGTTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus raphanistrum subsp. maritimus
EX773189       <-- ACCCGCCGTTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus raphanistrum subsp. landra
EY906243       <-- ACCCGCCATTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902473       --> ACCCGCCATTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY935216       --> AACCGCCGTTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus sativus cv Early Scarlet Globe
EX777023       --> ACCCGCCGTTATGGTAAGACCAAGGCGTGTTCTTTGGGTCACTCCCAGTG  Raphanus raphanistrum subsp. landra

               601    -    651
UN22392        --> ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
EX773189       <-- ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
EY906243       <-- ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
EY902473       --> ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
EY935216       --> ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG
EX777023       --> ATTATATGCCACTCTGCAGACTCCAAAGCTGGGAAACATATCTTAAGTGG

               651    -    701
UN22392        --> CATATGTCCAATGAGATCATCCCATTTCTCTTCGATCAAATTCAGTATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- CATATGTCCAATGAGATCATCCCATTTCTCTTCAATCAAATTCAGTATAG
EX773189       <-- CATATGTCCAATGAGATCATCCCATTTCTCTTCGATCAAATTCAGTATAG
EY906243       <-- CATATGTCCAATGAGATCATCCCATTTCTCTTCAATCAAATTCAGTATAG
EY902473       --> CATATGTCCAATGAGATCATCCCATTTCTCTT..................
EY935216       --> CATATGTCCAATGAGATCATCCCATTTCTCT...................
EX777023       --> CATATGTCCAATGAGATCATCCCATTTCTCTTCGATCAAATTCAGTATAG

               701    -    751
UN22392        --> CTTGGTTCTGTCTTGGTGTGCCCAAAGAAGAAATAACTGACCAAAGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- CTTGGTTCTGTCTTGGTGTGCCCAAAGAAGAAATAACTGACCAAAGGTTT
EX773189       <-- CTTGGTTCTGT-----CTTGCCCAAAGAAGAAATAACTGACCAAAGGTTT
EY906243       <-- CTTGGTTCTGTCTTGGTGTGCCCAAAGAAGAAATAACTGACCAAAGGTTT
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> CTTGGTTCTGTCTTGcccaaagaagaaa......................

               751    -    801
UN22392        --> CCCAAAGTGAAGAACCTAAAGTCCATGTGAGCAGGCTGGAGGTTTCCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- CCCAAAGTGAAGAACCTAAAGTCCATGTGAGCAGGCTGGAGGTTTCCAAC
EX773189       <-- CCCAAAGTGAAGAACCTAAAGTCCATGTGAGCAGGCTGGAGGTTTCCCAC
EY906243       <-- CCCAAAGTGAAGAACCTAAAGTCCATGTGAGCAGGCTGGAGGTTTCCCAC
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               801    -    851
UN22392        --> AAGAAAACCACACCTACGGCTTTCAGGAATCCAGTCCATTAACCACGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- AAGAAAACCACACCTACGGCTTTCAGGAATCCAGTCCATTAACCACGGAG
EX773189       <-- AAGAAAACCACACCTACGGCTTTCAGGAATCCAGTCCATTAACCACGGAG
EY906243       <-- AAGAAAGCCACACCTACGGCTTTCAGGAATCCAGTCCATTAACCAGGGAG
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               851    -    901
UN22392        --> AAACCTGGTCCGGGTAGATGTTGAACTTGTTGGTTGCATCAGTAGAGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- AAACCTGGTCCGGGTAGATGTTGAACTTGTTGGTTGCATCAGTAGAGTAC
EX773189       <-- AAACCTGGTCCGGGTAGATGTTGAACTTGTTGGTTGCATCAGTAGAGTAC
EY906243       <-- AAACCTGGTCCGGGTAGATGTTGAACTTGTTGGTTGCATCAGTAGAGTAC
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               901    -    951
UN22392        --> TCCTCAGTTTTATAACGGTAAATCTCGTTGATTTTGCATTTATCAACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- TCCTCAGTTTTATAACGGTAAATCTCGTTGATTTTGCATTTATCAACCCA
EX773189       <-- TCCTCAGTTTTATAACGGTAAATCTCGTTGATTTTGCATTTATCAACCCA
EY906243       <-- TCCTCAGTTTTATAACGGTAAATCTCGTTGATTTTGCATTTATCGACCCA
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               951    -   1001
UN22392        --> ATAGTTTTCTCTAATGTGGAATGAGATTGCACTGAGCCTGTTGTTAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ATc...............................................
EX773189       <-- AT................................................
EY906243       <-- ATAGTTTTCTCTAATGTGGAATGAGATTGCACTGAGCCTGTTGTTAATGG
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1001   -   1051
UN22392        --> TCCTTACTAGGTTCTTGGAGCTATCATTAATAGTTATCATCTCGCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- TCCTTACTAGGTTCTTGGAGCTATCATTAATAGTTATCATCTCGCGAGAA
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1051   -   1101
UN22392        --> GACCGAAGAGCAGAATAAAACAAAGCTTGGATCTCAAGAGGGTGACCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- GACCGAAGAGCAGAATAAAACAAAGCTTGGATCTCAAGAGGGTGACCATG
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1101   -   1151
UN22392        --> GATACCCATACGCCTGTCTATCATGCAAGAGCCATCAGTGACTAGTAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- GATACCCATACGCCTGTCTATCATGCAAGAGCCATCAGTGACTAGTAACG
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1151   -   1201
UN22392        --> TTGGAAACATATCAAACCCATCAGCTAAACACAAGTTTGCAATCATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- TTGGAAACATATCAAACCCATCAGCTAAACACAAGTTTGCAATCATCTTT
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1201   -   1251
UN22392        --> ATCCCTGTCTGCACATCTACCCTCTCTTGCAACGAGTAGTCCCCTGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- ..................................................
EY899325       <-- ..................................................
EX773189       <-- ..................................................
EY906243       <-- ATCCCTGTCTGCACATCTACCCTCTCTTGCAACGAGTAGTCCCCTGTGAT
EY902473       --> ..................................................
EY935216       --> ..................................................
EX777023       --> ..................................................

               1251   -   1301
UN22392        --> CTTCCCATATGCTCTCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~
FD970997       <-- .....................
EY899325       <-- .....................
EX773189       <-- .....................
EY906243       <-- CTTCCCATATGCTCTCAACAC
EY902473       --> .....................
EY935216       --> .....................
EX777023       --> .....................