1      -     51
UN22463        --> GGACCATTCAAAACAAAACCATTGATTGGATT---A-TAGTTGATAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- GGACCATTCAAAACAAAACCATTGATTGGATTTAGACTAGTTGATAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715997       --> GGACCATTCAAAACAAAACCATTGATTGGATT-----TAGTTGATAGAGC  Raphanus sativus var. oleiformis
FD543587       --> GGACCATTCAAAACAAAACCATTGATTGGATTTAGACTAGTTGATAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> ...ggATTCAAAACAAAACCATTGATTGGATT---A-TAGTTGATAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> ...ggATTCAAAACAAAACCATTGATTGGATT-----TAGTTGATAGAGC  Raphanus sativus var. oleiformis
FD563888       --> ...ggATTCAAAACAAAACCATTGATTGGATT-----TAGTTGATAGAGC  Raphanus sativus var. oleiformis
FD533180       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN22463        --> GAAAAATCTGAGAAAGAAAGAAAAAAAAA--CACTCAAAAGTTCCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- GAAAAATCTGAGAAAGAAAGAAAAAAAAA-ACACTCAAAAGTTCCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715997       --> GAAAAATCTGAGAAAGAAAGAAAAAAAAAAACACTCAAAAGTTCATATCT  Raphanus sativus var. oleiformis
FD543587       --> GAAAAATCTGAGAAAGAAAGAAAAAAAAA-ACACTCAAAAGTTCCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> GAAAAATCTGAGAAAGAAAGAAAAAAAAA--CACTCAAAAGTTCCTATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> GAAAAATCTGAGAAAGAAAGAAAAAAAAA--CACTCAAAAGTTCATATCT  Raphanus sativus var. oleiformis
FD563888       --> GAAAAATCTGAGAAAGAAAGAAAAAAAAA--CACTCAAAAGTTCATATCT  Raphanus sativus var. oleiformis
FD533180       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN22463        --> ATTATAAACAGTTAAAAATGAAGTCGACCGTCGTGATCCTCTTCACGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- ATTATAAACAGTTAAAA-TGAAGTCGACCGTCGTGATCCTCTTCACGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW715997       --> ATTATAAACAGTTAAAAATGAAGTCGATCGTCGTGATCCTCTTCACGTAC  Raphanus sativus var. oleiformis
FD543587       --> ATTATAAACAGTTAAAA-TGAAGTCGACCGTCGTGATCCTCTTCACGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> ATTATAAACAGTTAAAA-TGAAGTCGACCGTCGTGATCCTCTTCACGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> ATTATAAACAGTTAAAAATGAAGTCGACCGTCGTGATCCTCTTCACGTAC  Raphanus sativus var. oleiformis
FD563888       --> ATTATAAACAGTTAAAAATGAAGTCGACCGTCGTGATCCTCTTCACGTAC  Raphanus sativus var. oleiformis
FD533180       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN22463        --> CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
FD529441       <-- ..................................................
EW715997       --> CTTCTCCTCACTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
FD543587       --> CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
EY907136       --> CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
FD563022       --> CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
FD563888       --> CTTCTCCTCGCTGCGCCTTGCTTCGCTTTAGGATCGGAGAACACGAATTC
FD533180       --> ..................................................

               201    -    251
UN22463        --> GGATGTATACGAGATAGATTACAGGGGACCGGAGACTCATAACTCTAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- GGATGTATACGAGATAGATTACAGGGGACCGGAGACTCATAACTCTAGAC
FD529441       <-- ..................................................
EW715997       --> GGATGTATACGAGATAGATTACAGGGGACCGGAGACTCATAACTCTAGAC
FD543587       --> GGATGTATACGAGATAGATTACAGGGGACCGGAGACTCATAACTCTAGAC
EY907136       --> GGATGTATACGAGATAGATTACAGGGGACCGGAGACTCATAACTCTAGAC
FD563022       --> GGATGTATACGAGATAGATTACAGGGTACCGGAGACTCATAACTCTAGAC
FD563888       --> GGATGTATACGAGATAGATTACAGGGTACCGGAGACTCATAACTCTAGAC
FD533180       --> ..................................................

               251    -    301
UN22463        --> CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
FD529441       <-- ............gTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
EW715997       --> CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
FD543587       --> CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
EY907136       --> CTCCTCCGGAGACTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC
FD563022       --> CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATTCACCATAAAACC
FD563888       --> CTCCGCCGGAGACTCTGCACGGCAAGCGACCGTTCATTCACCATAAAACC
FD533180       --> ............gTCTGCACGGCAAGCGACCGTTCATCCACCATAAAACC

               301    -    351
UN22463        --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
FD529441       <-- TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
EW715997       --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
FD543587       --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
EY907136       --> TCTGCGGCTGGATCCGCCGGCGCTTATGTTGGAGGACAGCACTAGAAAGA
FD563022       --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
FD563888       --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA
FD533180       --> TCTGCGGCTGGATCCGCCGGCGCTCATGTTGGAGGACAGCACTAGAAAGA

               351    -    401
UN22463        --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
FD529441       <-- GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
EW715997       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
FD543587       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
EY907136       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
FD563022       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
FD563888       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA
FD533180       --> GATTTTTCAAGGAAGAGGAGAGAGACTAAGAAACTGAGAGTGAAAGAGGA

               401    -    451
UN22463        --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- AGTATATGAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus raphanistrum subsp. maritimus
EW715997       --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus sativus var. oleiformis
FD543587       --> AGTATATGAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus sativus var. oleiformis
FD563888       --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus sativus var. oleiformis
FD533180       --> AGTATATAAGTTTGTATAAGATGCAAGTACATAATTATTTATACAGTAAT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN22463        --> ACATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- ACATATTTAATCATATGATCATCGATGTCATCATG-CCGGTATTTTCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- ACATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus raphanistrum subsp. maritimus
EW715997       --> -TATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus sativus var. oleiformis
FD543587       --> ACATATTTAATCATATGATCATCGATGTCATCATG-CCGGTATTTTCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> ACATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> -TATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus sativus var. oleiformis
FD563888       --> -TATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus sativus var. oleiformis
FD533180       --> ACATATTTAATCATATGATCATCGATGTCATCATGTCCGGTATTTTCTTC  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN22463        --> ATGTACCGTTCTATCTTTTTTTTTT-----GGGTCTGAATCTCTTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- ATGTACCGTTCTATCTTTTTTTTTTTTTTTGGGTCTGAATCTCTTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD529441       <-- ATGTACCGTTCTATCTTTTTTTTT------GGGTCTGAATCTCTTGGAAG  Raphanus raphanistrum subsp. maritimus
EW715997       --> ATGTACCGTTCTATCTTTTTTTTTT----TGGGTCTGAATTTCTTGGAAG  Raphanus sativus var. oleiformis
FD543587       --> ATGTACCGTTCTATCTTTTTTTTTTTTTTTGGGTCTGAATCTCTTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907136       --> ATGTACCGTTCTACCTTTTTTTTTT-----GGGTCTGAACCTCTTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD563022       --> ATGTACCGTTCTATCTTTTTTTTTT-----GGGTCTGAATTTCTTGGAAG  Raphanus sativus var. oleiformis
FD563888       --> ATGTACCGTTCTATCTTTTTTTTTT-----GGGTCTGAATTTCTTGGAAG  Raphanus sativus var. oleiformis
FD533180       --> ATGTACCGTTCTTTCTTTTTTTT-------GGGTCTGA-TCTCTTGGAAG  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN22463        --> AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539385       <-- AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
FD529441       <-- AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
EW715997       --> AAAACTC...........................................
FD543587       --> AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
EY907136       --> AAAACTCGAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
FD563022       --> AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
FD563888       --> AAAACTCAAATTAATTCGGGTAATGTGTCGCCATATCAATATCAGTGTCG
FD533180       --> AAAACTCAAATTAATTC.................................

               601    -    651
UN22463        --> TTCTCAGAGC
                   ~~~~~~~~~~
FD539385       <-- TTCTCAGAtc
FD529441       <-- TTCTCAGAGC
EW715997       --> ..........
FD543587       --> TTCTCAGAtc
EY907136       --> TT........
FD563022       --> TTCTCAGA..
FD563888       --> TTCTCAGAt.
FD533180       --> ..........