1      -     51
UN22568        --> GCAGCAAATAAAATGACAGATTCATATATAAAAAGCACAACTGCAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- .............TGACAGATTCATATATAAAAAGCACAACTGCAAAACA
FD965606       <-- ...................................CACAACTGCAAAACA
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> GCAGCAAATAAAATTGCAGATTCATATATAAAA-TCACAACCGCAAAACA
EV530305       --> .....agATAAAATGACAGATTCATATATAAAAAGCACAACTGCAAAACA
FD531189       --> ...............................................ACA

               51     -    101
UN22568        --> TTCCATGTGAAAAATATTGATACTGTTAACACATGTTTAATAGTACACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- TTCCATGTGAAAAATATTGATACTGTTAACACATGTTTAATAGTACACAA
FD965606       <-- TTCCATGTGAAAAATATTGATACTGTTAACACATGTTTAATAGTACACAA
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> TTCCATGTGAAAA-TATTGATACTGTTAACACATGTTTAATAGTACACAA
EV530305       --> TTCCATGTGAAAAATATTGATACTGTTAACACATGTTTAATAGTACACAA
FD531189       --> TTCCATGTGAAAAATATTGATACTGTTAACACATGTTTAATAGTACACAA

               101    -    151
UN22568        --> ACTTTTTCAATTCGACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ACTTTTTCAAATCGACCAAGTGCCCGAGCAGAGTTGCTTATATATGGAAC
FD965606       <-- ACTTTTTCAATTCGACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAAC
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> ACTTTTTCAAATCGACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAAC
EV530305       --> ACTTTTTCAATTCGACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAAC
FD531189       --> ACTTTTTCAATTCCACCAAGTGCCCGAGCAGAGTTGCTTATATCTGGAAC

               151    -    201
UN22568        --> CAGATGCGGTGGTGTACTGTGT--T-----CCTACGAGCTATCAAAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- CAGATGCGGTGGTGTACTGTGTGTT-----CCTACGAGCTA.........
FD965606       <-- CAGATGCGGTGGTGTACTGTGT--T-----C-TACGAGCTATCAAAACCA
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> CAGATGCGGTGGTGTACTGTGT--TGTGTTCCTACGAGCTATCAAAACCA
EV530305       --> CAGATGCGGTGGTGTACTGTGT--T-----CCTACGAGCTATCAAAACCA
FD531189       --> CAGATGCGGTGGTGTACTGTGT--T-----CCTACGAGCTATCAAAACCA

               201    -    251
UN22568        --> AATATCCGGAAAACACCTTCATCGCCATAATATTTGGCACTCTTGTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- AATATCCGGAAAACACCTTCATCGCCATAATATTTGGCACTCTTGTCATC
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> AATATCCGGAAAACACCTTCATCACCATAATACTTGGCACTCTTGTCATC
EV530305       --> AATATCCGGAAAACACCTTCATCGCCATAATATTTGGCACTCTTGTCATC
FD531189       --> AATATCCGGAAAACACCTTCATCGCCATAATATTTGGCACTCTTGTCATC

               251    -    301
UN22568        --> ACCTGCATATGCAAGTAAGTTGTATTTGGGATTCCACTCCACGCTATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ACCTGCATATGCAAGTAAGTTGTATTTGGGATTCCACTCCACGCTATTCA
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> ACCTGCATATGCAAGTAAGTTGTATTTGGGATTCCACTCCACGCTATTCA
EV530305       --> ACCTGCATATGCAAGTAAGTTGTATTTGGGATTCCACTCCACGCTATTCA
FD531189       --> ACCTGCATATGCAAGTAAGTTGTATTTGGGATTCCACTCCACGCTATTCA

               301    -    351
UN22568        --> TGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCAGTTTGGACGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- TGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCAGTTTGGACGTTT
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> TGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCGGTTTGGACGTTT
EV530305       --> TGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCAGTTTGGACGTTT
FD531189       --> TGGCAGCTCTACATGGAATTTGATGCACCGTCCGCCCAGTTTGGACGTTT

               351    -    401
UN22568        --> GCAATATCTATAAATAGATCCTCACTGGCTGAAGCAATGTATTCTCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- GCAATATCTATAAATAGATCCTCACTGGCTGAAGCAATGTATTCTCCTGA
EV525600       <-- ..................................................
EY939319       <-- ..................................................
EV549971       <-- ..................................................
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> GCAATATCTATAAATAAATCTTCACTGGCTGAAGCAATGTATTCTCCTGA
EV530305       --> GCAATATCTATAAATAGATCCTCACTGGCTGAAGCAATGTATTCTCCTGA
FD531189       --> GCAATATCTATAAATAGATCCTCACTGGCTGAAGCAATGTATTCTCCTGA

               401    -    451
UN22568        --> ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC
EV525600       <-- ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC
EY939319       <-- ..............................GTCAAGTTTTGTAAATGTTC
EV549971       <-- ...............................TCAAGTTT-GTAAATGTTC
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC
EV530305       --> ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC
FD531189       --> ATGATTGAAGCTTATTGTCCTGACTGGCGAGTCAAGTTTTGTAAATGTTC

               451    -    501
UN22568        --> TCAAACAAAGCATGTCTGACATATCCCAAAGGCTGACTAAGGAATCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- TCAAACAAAGCATGTCTGACATATCCCAAAGGCTGACTAAGGAATCCGCA
EV525600       <-- TCAAACAAAGCATGTCCGACATATCCCAAAGGCTGACTAAGGAATCCGCA
EY939319       <-- TCAAACAGAGCATGTCTGACATATCCCAAAGGCTGACTAAGGAATCCGCA
EV549971       <-- TCAAACAAAGCATGTCTGACATATCCCAAAGGCTAACTAAGGAATCCGCA
FD535554       <-- ..................................................
FD569125       <-- ..................................................
EV545344       --> TCAAACAAAGCATGTCTGACATATCCCAAAGGCTAACTAAGGAATCCGCA
EV530305       --> TCAAACAAAGCATGTCCGACATATCCCAAAGGCTGACTAAGGAATCCGCA
FD531189       --> TCAAACAAAGCATGTCTGACATATCCCAAAGGCTGACTAAGGAATCCGCA

               501    -    551
UN22568        --> CTCCCAACTGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD965606       <-- CTCCCAACTGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus raphanistrum subsp. maritimus
EV525600       <-- CTCCCAACTGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus raphanistrum subsp. maritimus
EY939319       <-- CTCCCAACAGCAAAGTATCT-CCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus sativus cv Early Scarlet Globe
EV549971       <-- CTCCCAACAGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535554       <-- .....................tCTTTAG-ATCAAT-GCAATGCAATAGCA  Raphanus raphanistrum subsp. maritimus
FD569125       <-- ............................GATCAATTGCAATGCAATAGCA  Raphanus sativus cv Early Scarlet Globe
EV545344       --> CTCCCAACAGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530305       --> CTCCCAACTGCAAAGTATCTTCCTTTAGGATCAATTGCAATGCAATAGCA  Raphanus raphanistrum subsp. maritimus
FD531189       --> CTCCCAACTGCAAAGTATCTTCCTT.........................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN22568        --> CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
EV525600       <-- CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
EY939319       <-- TCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
EV549971       <-- CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
FD535554       <-- CC-GG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGACCATTTTGC
FD569125       <-- TCCGGGCTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
EV545344       --> CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
EV530305       --> CCCGG-CTGTGTGGGCAGTGAGAGTGTCAACTGGTTTTAGATCATTTTGC
FD531189       --> ..................................................

               601    -    651
UN22568        --> ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD965606       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGT  Raphanus raphanistrum subsp. maritimus
EV525600       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGT  Raphanus raphanistrum subsp. maritimus
EY939319       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTACCAAGTCCAGTAGT  Raphanus sativus cv Early Scarlet Globe
EV549971       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD535554       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGT  Raphanus raphanistrum subsp. maritimus
FD569125       <-- ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTACCAAGTCCAGTAGT  Raphanus sativus cv Early Scarlet Globe
EV545344       --> ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530305       --> ATTTTCTCAAGTGGATATGAGAGAACTTCAACAGTGCCAAGTCCAGTGGT  Raphanus raphanistrum subsp. maritimus
FD531189       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN22568        --> CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
EV525600       <-- CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
EY939319       <-- CAAGAAGAAAAGATCTCCTGACATGTTCCAAGCAATCTCGTTTACCTCAT
EV549971       <-- CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
FD535554       <-- CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
FD569125       <-- CAAGAAGAAAAGATCTCCTGACATGTTCCAAGCAATCTCGTTTACCTCAT
EV545344       --> CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
EV530305       --> CAAGAAGAAAAGATCTCCTGACATATTCCAAGCAATCTCATTTACCTCAT
FD531189       --> ..................................................

               701    -    751
UN22568        --> ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGAC.......
EV525600       <-- ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
EY939319       <-- ATGGGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
EV549971       <-- ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
FD535554       <-- ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
FD569125       <-- ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
EV545344       --> ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACT..............
EV530305       --> ATGAGAATTTGCGCTTGTATAGGGATTTATTAAACTTACGGACATCCAGA
FD531189       --> ..................................................

               751    -    801
UN22568        --> ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGTGTCCCGTCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGTGTCCCGTCAGG
EY939319       <-- ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGAGTCCCGTCAAG
EV549971       <-- ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGTGTCCCGTCAGG
FD535554       <-- ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGTGTCTCGTCAGG
FD569125       <-- ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGAGTCCCGTCAGG
EV545344       --> ..................................................
EV530305       --> ATGGTAAGCTCATCGTCCCTATTACCAACAGCTATATGTGTCCCGTCAGG
FD531189       --> ..................................................

               801    -    851
UN22568        --> TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
EY939319       <-- TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
EV549971       <-- TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
FD535554       <-- TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
FD569125       <-- TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
EV545344       --> ..................................................
EV530305       --> TCTGTAGGTGATGTTTATATTCTCCCCACTAAGTTCTGCCTGCTGTGTGC
FD531189       --> ..................................................

               851    -    901
UN22568        --> ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTATCACCAGAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTATCACCAGAGGCA
EY939319       <-- ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTATCACCAGAGGCA
EV549971       <-- ATTTTCCACTGCGAGCATCCCAGGGACGAACGCTCTTATCACCAGAGGCA
FD535554       <-- ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTATCACCAGAGGCA
FD569125       <-- ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTATCACCAGAGGCA
EV545344       --> ..................................................
EV530305       --> ATTTTCCACTGCGAGCATCCCAGAGACGAACGCTCTTA............
FD531189       --> ..................................................

               901    -    951
UN22568        --> GTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- GTAGCAACAGGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
EY939319       <-- GTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
EV549971       <-- GTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
FD535554       <-- GTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
FD569125       <-- GTAGCAACAAGATCTGAATGTTTAGGGTCCCAGCATAGCTGATCCACACT
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               951    -   1001
UN22568        --> ATCAGTATGTCCCTTTAGCTCAAGGTCCTTAACCTTACTATGACCGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- ATCAGTATGTCCCTTTAGCTCAAGGTCCTTAACCTTACTATGACCGTGAG
EY939319       <-- ATCAGTATGTCCCTTTAGCTCAAGGTCCTTAATTTTACTATGACCGTGAG
EV549971       <-- ATCAGTATGTCCCTTTAGCTCAAGGTCCTTAACCTTACTATGACCGTGAG
FD535554       <-- ATCAGTATGTCCCTTTAGCTGAAGGTCCTTAACCTTACTATGACCGTGAG
FD569125       <-- ATCAGTATGTCCCTTTAGCTCAAGGTCCTTAATTTTACTATGACCGTGAG
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               1001   -   1051
UN22568        --> GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACAGAACCAGAAGCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACAGAACCAGAAGCAAGC
EY939319       <-- GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACGGAACCAGAAGCAAGC
EV549971       <-- GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACAGAACCAGAAGCAAGC
FD535554       <-- GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACAGAACCAGAAGCAAGC
FD569125       <-- GTTCAATGGTCCAAACACGAGCTGTTTGGTCAACGGAACCAGAAGCAAGC
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               1051   -   1101
UN22568        --> TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
EY939319       <-- TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
EV549971       <-- TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
FD535554       <-- TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
FD569125       <-- TTTGTCCCATTAGAGTTCCAAGCCACCGAATGTACCTTCTTCTTGTGACC
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               1101   -   1151
UN22568        --> TTGATACTCTCTGCTATGAAGATTCTTGAAAGGAATCGTCTCCTCCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- TTGATACTCTCTGCTATGAAGATTCTTGAAAGGAATCGTCTCCTCCATCT
EY939319       <-- TTGATACTCTCTGCTATGAAGATTCTTGAAAGGAATCGTCTCCTCCATCT
EV549971       <-- TTGATACTCTCTGCTATGAAGATTCTTGAAAGGA-TCGTCTCCTCCATCT
FD535554       <-- TTGATACTCTCTGCTATGAAGATTCTTGAAAGGAATCGTCTCCTCCATCT
FD569125       <-- TTGATACTCTCTGCTATGAAGATTCTTGAAAGGAATCGTCTCCTCCATCT
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               1151   -   1201
UN22568        --> CCTTGTTCCACTCAACCTTCTTCAACCTTCCTTCCCGACTCACTCAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW723532       <-- ..................................................
FD965606       <-- ..................................................
EV525600       <-- CCTTGTTCCACTCAA...................................
EY939319       <-- CCCTGTTCCACTCAACCTTCcttcccg.......................
EV549971       <-- CCTTGTTCCACTCAACCTTCTTCAACCTTCCTTCCCGACTCACTCcc...
FD535554       <-- CCTTGTTCCACTCAACCTTCTTCAACCTTCCTTCCCGACTCACTCAATGT
FD569125       <-- CCCTGTTCCACTCAACCTTCcttcccgactcactcaatc...........
EV545344       --> ..................................................
EV530305       --> ..................................................
FD531189       --> ..................................................

               1201   -   1251
UN22568        --> ATCCCCC
                   ~~~~~~~
EW723532       <-- .......
FD965606       <-- .......
EV525600       <-- .......
EY939319       <-- .......
EV549971       <-- .......
FD535554       <-- ATCCCCC
FD569125       <-- .......
EV545344       --> .......
EV530305       --> .......
FD531189       --> .......