Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN22591

               1      -     51
UN22591        --> GGGACACATCTCTCTCTCTACTTCTCTTTACAAAAAAACATTCCACATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> GGGACACATCTCTCTCTCTACTTCTCTTTACAAAAAAACATTCCACATCT
EY939328       --> .GGACACATCTCTCTCTCTACTTCTCTTTACAAAAAA-CATTCCACATCT
FY449808       --> .................................AAAAACATTCCACATCT
EW724143       --> ..................................................

               51     -    101
UN22591        --> CTGAGTTTCTTCTTGAGTTCTTTATTTACTCAGAAGTCAGAAAGATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> CTGAGTTTCTTCTTGAGTTCTTTATTTACTCAGAAGTCAGAAAGATCAAA
EY939328       --> CTGAGTTTCTTCTTGAGTTCTTTATTTACTCAGAAGTCAGAAAGATCAAA
FY449808       --> CTGAGTTTCTTCTTGAGTTCTTTATTTACTCAGAAGTCAGAAAGATCAAA
EW724143       --> ..................................................

               101    -    151
UN22591        --> CCTTCTAACCCTCTCTCTTTTTTCTGTTCTCTATTGTCGTCTAGATTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> CCTTCTAACCCTCTCTCTTTTTTCTGTTCTCTATTGTCGTCTAGATTCAC
EY939328       --> CCTTCTAACCCTCTCTCTTTTTTCTGTTCTCTATTGTCGTCTAGATTCAC
FY449808       --> CCTTCTAACCCTCTCTCTTTTTTCTGTTCTCTATTGTCGTCTAGATTCAC
EW724143       --> ..................................................

               151    -    201
UN22591        --> AAGAAAATATTAAGATTCTGAGCTAAGAATCCACTGGGAAAATCTTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> AAGAAAATATTAAGATTCTGAGCTAAGAATCCACTGGGAAAATCTTACAT
EY939328       --> AAGAAAATATTAAGATTCTGAGCTAAGAATCCACTGGGAAAATCTTACAT
FY449808       --> AAGAAAATATTAAGATTCTGAGCTAAGAATCCACTGGGAAAATCTTACAT
EW724143       --> ..................................................

               201    -    251
UN22591        --> ATATAGGAAAGTTTTAGTGGATAGATCATGATGATGAGAGAAGAAGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> ATATAGGAAAGTTTTAGTGGATAGATCATGATGATGAGAGAAGAAGATCT
EY939328       --> ATATAGGAAAGTTTTAGTGGATAGATCATGATGATGAGAGAAGAAGATCT
FY449808       --> ATATAGGAAAGTTTTAGTGGATAGATCATGATGATGAGAGAAGAAGATCT
EW724143       --> ..................................................

               251    -    301
UN22591        --> TGGTTTGAGCCTAAGCTTAGGTTTTCCACAAAATCACAATCCTAGTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> TGGTTTGAGCCTAAGCTTAGGTTTTCCACAAAATCACAATCCTAGTTCGT
EY939328       --> TGGTTTGAGCCTAAGCTTAGGTTTTCCACAAAATCACAATCCTAGTTCGT
FY449808       --> TGGTTTGAGCCTAAGCTTAGGTTTTCCACAAAATCACAATCCTAGTTCGT
EW724143       --> ..................................................

               301    -    351
UN22591        --> CCATATCCAACGAGCACCATAGATTTCCATGGAGCCAGACATTCGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..................................................
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> CCATATCCAACGAGCACCATAGATTTCCATGGAGCCAGACATTCGCTTCT
EY939328       --> CCATATCCAACGAGCACCATAGATTTCCATGGAGCCAGACATTCGCTTCT
FY449808       --> CCATATCCAACGAGCACCATAGATTTCCATGGAGCCAGACATTCGCTTCT
EW724143       --> ..................................................

               351    -    401
UN22591        --> ACATCAGATCTTCGCAAAATAGAGGTGAACACTCTTCCATCAACGGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ..............................gCTCTTCCATCAACGGTGGA
EY927098       <-- ..................................................
FD944295       <-- ..................................................
EY931050       --> ACATCAGATCTTCGCAAAATAGAGGTGAACACTCTTCCATCAACGGTGGA
EY939328       --> ACATCAGATCTTCGCAAAATAGAGGTGAACACTCTTCCATCAACGGTGGA
FY449808       --> ACATCAGATCTTCGCAAAATAGAGGTGAACACTCTTCCATCAACGGTGGA
EW724143       --> ................................................GA

               401    -    451
UN22591        --> TTGCGAGGAGGAAGCGGGAGTTTCATCTCCTAACAGTACAATCTCGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- TTGCGAGGAGGAAGCGGGAGTTTCATCTC-TAACAGTACAATCTCGAGCA
EY927098       <-- .................................................A
FD944295       <-- ..................................................
EY931050       --> TTGCGAGGAGGAAGCGGGAGTTTCATCTCCTAACAGTACAATCTCGAGCA
EY939328       --> TTGCGAGGAGGAAGCGGGAGTTTCATCTCCTAACAGTACAATCTCGAGCA
FY449808       --> TTGCGAGGAGGAAGCGGGAGTTTCATCTCCTAACAGTACAATCTCGAGCA
EW724143       --> TTGCGAGGAGGAAGCGGGAGTTTCATCTCCTAACAGTACAATCTCGAGCA

               451    -    501
UN22591        --> CAATAAGCGGCGGGAAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- CAATAAGCGGCGGGAAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG
EY927098       <-- CAATAAGCGCCGG-AAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG
FD944295       <-- ..................................................
EY931050       --> CAATAAGCGGCCGGAAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG
EY939328       --> CAATAAGCGGCGGGAAGAGGAGTGGGAGAGATCACGATGAGACCACTCCG
FY449808       --> CAATAAGCGGCCGGAAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG
EW724143       --> CAATAAGCGGCGGGAAGAGGAGTGAGAGAGATCACGATGAGACCACTCCG

               501    -    551
UN22591        --> GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGATGGCGGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGACGGCGGCGG  Raphanus sativus cv Early Scarlet Globe
EY927098       <-- GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGATGGCGGGGG  Raphanus sativus var. oleiformis
FD944295       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931050       --> GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGATGGCGGGGG  Raphanus sativus var. oleiformis
EY939328       --> GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGACGGCGGCGG  Raphanus sativus cv Early Scarlet Globe
FY449808       --> GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGATGGCGGGGG  Raphanus sativus cv GSK3-1
EW724143       --> GATAGAGGTTACTCACGTGGAACCTCCGACGAAGAAGAAGACGGCGGCGG  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN22591        --> -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
EY927098       <-- -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
FD944295       <-- ..................................................
EY931050       --> GCGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
EY939328       --> -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
FY449808       --> -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT
EW724143       --> -CGGTGAAACGTCGAGGAAGAAGCTCAGATTATCTAAGAATCAGTCTGCT

               601    -    651
UN22591        --> TTTCTTGAAGAGACTTTCAAAGAACACAACACTCTCAATCCCAAACAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- TTTCTTGAAGAGACTTTCAAAGAACACAACACTCTCAATCCCAAACAGAA  Raphanus sativus cv Early Scarlet Globe
EY927098       <-- TTTCTTGAAGAGACTTTCAAAGAACACAACAATCTCAATCCCAAACAGAA  Raphanus sativus var. oleiformis
FD944295       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931050       --> TTTCTTGAAGAGACTTTCAAAGAACACAACAATCTCAATCCCAAACAGAA  Raphanus sativus var. oleiformis
EY939328       --> TTTCTTGAAGAGACTTTCAAAGAACACAACACTCTCAATCCCAAACAGAA  Raphanus sativus cv Early Scarlet Globe
FY449808       --> TTTCTTGAAGAGACTTTCAAAGAACACAACAATCTCAATCCCAAACAGAA  Raphanus sativus cv GSK3-1
EW724143       --> TTTCTTGAAGAGACTTTCAAAGAACACAACACTCTCAATCCCAAACAGAA  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN22591        --> GCTAGCTCTGGCCAAAAAA--TTGAACATGACCACAAGACAAGTGGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GCTAGCTCTGGCCAAAAAA--TTGAACATGACCACAAGACAAGTGGAAGT
EY927098       <-- GCTAGCTCTGGCCAAAAAAAATTGAACATGACCACAAGACAAGTGGAAGT
FD944295       <-- ......TCTGGCCAAAAAA--TTGAACATGACCACAAGACAAGTGGAAGT
EY931050       --> GCTAGCTCTGGCCAAAAAA-ATTGAACATGAC-AC-AGACAAGTGGAAGT
EY939328       --> GCTAGCTCTGGCCAAAAA---TTGAACATGACCACA-GACAAGTGGAAGT
FY449808       --> GCTAGCTCTGGCCAAAAAA--TTGAACATGACCACAAGACAAGTGGAAGT
EW724143       --> GCTAGCTCTGGCCAAAAAA--TTGAACATGACCACAAGACAAGTGGAAGT

               701    -    751
UN22591        --> GTGGTTTCAGAACAGAAGAGCAAGAACCAAATT-GAAGCAAACGGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GTGGTTTCAGAACAGAAGAGCAAGAACCAAATT-GAAGCAACCGGAAATG
EY927098       <-- GTGGTTTCAGAACAGAAGAGCAAGAACCAAATT-GAAGCAAACGGAAATG
FD944295       <-- GTGGTTTCAGAACAGAAGAGCAAGAACCAAATT-GAAGCAAACGGAAATG
EY931050       --> GTGGTTTCAGAcagag..................................
EY939328       --> GTGGTTTCAGA-CAG-AGAGCA-G-ACCAAATT-GA-GC-AACGGAA-TG
FY449808       --> GTGGTTTCAGAACAGAAGAGCAAGAACCAAATT-GAAGCAAACGGAAATG
EW724143       --> GTGGTTTCAGAACAGAAGAGCAAGAACCAAATTTGAAGCAACCGGAAATG

               751    -    801
UN22591        --> GATTGTGAATACTT-GAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GATTGTGAATACTT-GAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC
EY927098       <-- GATTGTGAATACTT-GAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC
FD944295       <-- GATTGTGAATACTT-GAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC
EY931050       --> ..................................................
EY939328       --> GAT-GTG-ATACTT-GAA-CG-TGCGTAGAGAActa..............
FY449808       --> GATTGTGAATACTT-GAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC
EW724143       --> GATTGTGAATACTTTGAAACGTTGCGTAGAGAAACTAACGGAGGAGAACC

               801    -    851
UN22591        --> GGCGACTTCAGAAAGAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GGCGACTTCAGAAAGAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCA
EY927098       <-- GGCGACTTCAGAAAGAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCA
FD944295       <-- GGCGACTTCAGAAAGAGGCTATGGGGCTTCGAACTCTCAAGCTGTCTCCA
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> GGCGACTTCAGAAAGAGGCTATGGAGCTTCGAACTCT.............
EW724143       --> GGCGACTTCAGAAAGAGGCTATGGAGCTTCGAACTCTCAAGCTGTCTCCA

               851    -    901
UN22591        --> CAGTTTTACGGCCAAATGACTCCACCAACTACACTCATCATGTGTCC-GT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- CAGTTTTACGGCCAAATGACTCCACCAACTACACTCATCATGTGTCC-GT
EY927098       <-- CAGTTTTACGGCCAATTGACTCCACCAACTACACTCATCATGTGTCC-GT
FD944295       <-- CAG-CTTACGGCCAAATGACTCCACCAACTACACTCATCATGTGTCC-GT
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> CAGTTTTACGGCCAAATGACTCCACCAACTACACTCATCATGTGTCCCGT

               901    -    951
UN22591        --> CGTGTGAGCGTGTT-GCTGGGCC-ATCATCAAACCATCACCACCACAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- CGTGTGAGCGTGTT-GCTGGGCC-ATCATCAAACCATCACCACCACAATC
EY927098       <-- CGTGTGAGCGTGTT-GCTGGGCC-ATCATCGAACCATCACC---ACAATC
FD944295       <-- CGTGTGGGCGTGTT-GCTGGGCC-ATCATCAAACCATCACCACCACAATC
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> CGTGTGAGCGTGTTTGCTGGGCCCATCATCAAACCATCACCACCACAATC

               951    -   1001
UN22591        --> ACCGGCCC-GTTACGATCAACCCC-TGGGCTGCTTGTGCTGG-TCAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- ACCGGCCC-GTTACGATCAACCCC-TGGGCTGCTTGTGCTGG-TCAAGTG
EY927098       <-- ACCGGCCC-GTTCCAATCAACCCC-TGGGCTGCTTGTGCTTG-TCAAGTG
FD944295       <-- ACCGGCCC-GTTACGATCAACCCC-TGGGCTGCTTGTGCTGG-TCAAGTG
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> ACCGGCCCCGTTACGATCAACCCCCTGGGCTGCTTGTGCTGGGTCAAGTG

               1001   -   1051
UN22591        --> GCCGCTAATGGACTGGATTTTGAAGCCCTGCGTCCACGATCGTGAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GCCGCTAATGGACTGGATTTTGAAGCCCTGCGTCCACGATCGTGAGAGGA
EY927098       <-- GCCGCTAATGGACTAAATTTTGAAGCCTTACGTCCACGATCGTGAGAGGA
FD944295       <-- GCCGCTAATGGACTGGATTTTGAAGCCCTGCGTCCACGATCGTGAGAGGA
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> GCCGCTAATGGACTGGATTTTGAAGCCCTGCGTCCACGATCGTGAGAGGA

               1051   -   1101
UN22591        --> AAAGATGTTCTGTTAGTTTTCACTTGTGGTGATGG-TTTGGTTGTAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- AAAGATGTTCTGTTAGTTTTCACTTGTGGTGATGG-TTTGGTTGTAATGT
EY927098       <-- AAAGATGTTCTGTTAGTTTTCACTTGTGGTGATGG-TTTGGTTGTAATGT
FD944295       <-- AAAGATGTTCTGTTAGTTTTCACTTGTGGTGATGG-TTTGGTTGTAATGT
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> AAAGATGTTCTGTTAGTTTTCACTTGTGGTGATGGGTTTGGTTGTAATGT

               1101   -   1151
UN22591        --> GGCTGTGTGGGGTCTCATTGTAATTTTGGATCATTGCCTTCCCAAATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- GGCTGTGTGGGGTCTCATTGTAATTTTGGATCATTGCCTTCCCAAATTAT
EY927098       <-- GGCTGTGTGGGGTCTCATTATAATTTTGGATCATTGCCTTCCCAAATTAT
FD944295       <-- GGCTGTGTGGGGTCTCATTGTAATTTTGGATCATTGCCTTCCC.......
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> GGC...............................................

               1151   -   1201
UN22591        --> AGTGTCATGATTAGCAAAAAATAGTTACAAATTACAATACTAACCAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- AGTGTCATGATTAGCAAAAAATAGTTACAAATTACAATACTAACCAGTTA
EY927098       <-- AGTGTCATGATTAGCAAAAAATAGTTACAAATTACAATACTAACCAGTTA
FD944295       <-- ..................................................
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> ..................................................

               1201   -   1251
UN22591        --> TGTAACTAGTTTGATGTACAACTGTTTTTAATTTATATCTTTTAAAAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728673       <-- TGTAACTAGTTTGATGTACAACTGTTTTT.....................
EY927098       <-- TGTAACTAGTTTGATGTACAACTGTTTTTAATTTATATCTTTTAAAAGTG
FD944295       <-- ..................................................
EY931050       --> ..................................................
EY939328       --> ..................................................
FY449808       --> ..................................................
EW724143       --> ..................................................

               1251   -   1301
UN22591        --> TTTTAGAC
                   ~~~~~~~~
EW728673       <-- ........
EY927098       <-- TTTTAGAC
FD944295       <-- ........
EY931050       --> ........
EY939328       --> ........
FY449808       --> ........
EW724143       --> ........