Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN22632

               1      -     51
UN22632        --> GGATCCCTCTCTCTCTCTCCGCCACTCTACAATGGCCGGTCTACTCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ..................................................
FD537620       <-- ..................................................
EV545092       <-- ..................................................
FD566333       <-- ..................................................
EV549664       --> GGATCCCTCTCTCTCTCTCCGCCACTCTACAATGGCCGGTCTACTCAAAA
FD562416       --> ..................................................
EX889463       --> ..................................................
FD541314       --> ..................................................

               51     -    101
UN22632        --> CGCTGGCGGTGAGGAGGAAGAAGCGGCGGTTACCATAGCATTGCTGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ..................................................
FD537620       <-- ..................................................
EV545092       <-- ..................................................
FD566333       <-- ..................................................
EV549664       --> CGCTGGCGGTGAGGAGGAAGAAGCGGCGGTTACCATAGCATTGCTGAGTT
FD562416       --> ..................................................
EX889463       --> ..................................................
FD541314       --> ..................................................

               101    -    151
UN22632        --> CATACAAAGAAGCTTTAGCAGAGAACAACGAGGAGAAGATTGCTGAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ..................................................
FD537620       <-- ..................................................
EV545092       <-- ..................................................
FD566333       <-- ..................................................
EV549664       --> CATACAAAGAAGCTTTAGCAGAGAACAACGAGGAGAAGATTGCTGAGATA
FD562416       --> ..................................................
EX889463       --> ..................................................
FD541314       --> ..................................................

               151    -    201
UN22632        --> GAAGCGTCACTGAAGTCCATCGAAGATGAAAAGTTTCATCTCCAGGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ..................................................
FD537620       <-- ..................................................
EV545092       <-- ..................................................
FD566333       <-- ..................................................
EV549664       --> GAAGCGTCACTGAAGTCCATCGAAGATGAAAAGTTTCAACTCCAGGAGAA
FD562416       --> .............gGTCCATCGAAGATGAAAAGTTTCATCTCCAGGAGAA
EX889463       --> ..................................................
FD541314       --> ..................................................

               201    -    251
UN22632        --> AGCCGTCTCTTTATCTAATGAGTTAACTGTAGAGAGGGATCGGCTGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- .......................gAACTGTAGAGAGGGATCGGCTGATAA
FD537620       <-- ..................................................
EV545092       <-- ..................................................
FD566333       <-- ..................................................
EV549664       --> AGCCGCCTCTTTATCTAATGAGTTAACTGTAGAAAGGGATCGGCTGATAA
FD562416       --> AGCCATCTCTTTATCTAATGAGTTAACTGTAGAGAGGGATCGGCTGATAA
EX889463       --> .......................gAACTGTAGAGAGGGATCGGCTGATAA
FD541314       --> ..................................................

               251    -    301
UN22632        --> GGATCAGTGCGGACTTCGACAACTTCAGGAAGAGGAATGAGAGGGAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- GGATCATTGCGGACTTCGACAACTTCAGGAAGAGGAATGAGAGGGAGAGG
FD537620       <-- ......GTGCGGACTTCGACAACTTCAGGAAGAGGAATGAGAGGGAGAGG
EV545092       <-- ....................AACTTCAGGAAGAGGAACGAGAGGGAGAGG
FD566333       <-- ..................................................
EV549664       --> GGATCAGTGCGGACTTCGACAACTTCAGGAAGAGGAACGAGAGGGAGAGG
FD562416       --> GGATCAGTGCGGACTTCGACAACTTCAGGAAGGGGAATGAGAGGGAGAGG
EX889463       --> GGATCATTGCGGACTTCGACAACTTCAGGAAGAGGAATGAGAGGGAGAGG
FD541314       --> ......GTGCGGACTTCGACAACTTCAGGAAGAGGAATGAGAGGGAGAGG

               301    -    351
UN22632        --> CTGAACCTTGTTTCAAATGCTCAAGGGGAGGTTGTTGAGAATCTTCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- CTGAACCTTGTTTCAAATGCTCAAGGAGAGGTTGTTGAGAATCTTCTGGC  Raphanus sativus var. oleiformis
FD537620       <-- CTGAACCTTGTTTCAAATGCTCAAGGGGAGGTTGTTGAGAATCTTTTGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545092       <-- CTGAACCTTGTTTCAAATGCTCAAGGGGAGGTTGTTGAGAATCTTCTGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566333       <-- .............................GGTTGTTGAGAATCTTCTGGC  Raphanus sativus var. oleiformis
EV549664       --> CTGAACCTTGTTTCAAATGCTCAAGGGGAGGTTGTTGAGAATCTTCTGGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562416       --> CTGAACCTTGTTTCAAATGCTCAAGGAGAGGTTGTTGAGAATCTTCTGGC  Raphanus sativus var. oleiformis
EX889463       --> CTGAACCTTGTTTCAAATGCTCAAGGAGAGGTTGTTGAGAATCTTCTGGC  Raphanus sativus var. oleiformis
FD541314       --> CTGAACCTTGTTTCAAATGCTCAAGGGGAGGTTGTTGAGAATCTTTTGGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN22632        --> GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
FD537620       <-- GGTTCTGGATAATTTCGGGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
EV545092       <-- GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
FD566333       <-- GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
EV549664       --> GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
FD562416       --> GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
EX889463       --> GGTTTTGGATAATTTCGAGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG
FD541314       --> GGTTCTGGATAATTTCGGGAGAGCCAAGTCCCAGATCAAGGTGGAGACTG

               401    -    451
UN22632        --> AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
FD537620       <-- AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAACATATACAAACAGTTT
EV545092       <-- AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
FD566333       <-- AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
EV549664       --> AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
FD562416       --> AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
EX889463       --> AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAGCATATACAAACAGTTT
FD541314       --> AGGGAGAAGAGAAAGTCACCAACAGCTACCAGAACATATACAAACAGTTT

               451    -    501
UN22632        --> GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
FD537620       <-- GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
EV545092       <-- GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
FD566333       <-- GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
EV549664       --> GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
FD562416       --> GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
EX889463       --> GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA
FD541314       --> GTTGAGATTCTAGGTTCGCTTGGTGTTGTCACTGTGGAGACTGTCGGCAA

               501    -    551
UN22632        --> ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTCTGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTTTGCGG
FD537620       <-- ACAGTTTGATCCAATGCTACACGAGGCAATAATGAGGGAGGATTCTGCGG
EV545092       <-- ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTTTGCGG
FD566333       <-- ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTTTGCGG
EV549664       --> ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTCTGCGG
FD562416       --> ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTCTGCGG
EX889463       --> ACAGTTTGATCCAATGCTTCACGAGGCAATAATGAGGGAGGATTCTGCGG
FD541314       --> ACAGTTTGATCCAATGCTACACGAGGCAATAATGAGGGAGGATTCTGCGG

               551    -    601
UN22632        --> AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
FD537620       <-- AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
EV545092       <-- AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
FD566333       <-- AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
EV549664       --> AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
FD562416       --> AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
EX889463       --> AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA
FD541314       --> AATACGAAGAGGGTATAGTACTTGAAGAATACAGGAAAGGTTTCTTGCTA

               601    -    651
UN22632        --> GGGGAAAGACTTTTACGTCCTTCAATGGTGAAAGTATCAGCTGGACCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- GGGGAAAGACTTTTACGTCCTTCAATGGTGAAAGTATCAGCTAGACCCGG  Raphanus sativus var. oleiformis
FD537620       <-- GGGGAAAGATTTTTACGTCCTTCAATGGTGAAAGTATCAGCTGGACCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545092       <-- GGGGAAAGACTTTTACGTCCTTCAATGGTGAAAGTATCAGCTGGACCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566333       <-- GGGGAAAGACTTTTACGTCCTTCAATGGTGAGAGTATCAGCTAGACCCGG  Raphanus sativus var. oleiformis
EV549664       --> GGGGAAAGACTTTTACGTCCTTCAATGGTGAAAGTATCAGCTGGACCCGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD562416       --> GGGGAAAGACTTTTACGTCCTTCAATGGTGAGAGTATCAGCTAGACCCGG  Raphanus sativus var. oleiformis
EX889463       --> GGGGAAAGACTTTTACGTCCTTCAATGGTGAAAGTATCAGCTAGACCCGG  Raphanus sativus var. oleiformis
FD541314       --> GGGGAAAGATTTTTACGTCCTTCAATGGTGAAAGTATCAGCTGGACCCGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN22632        --> ACCAGAAAAGG-CAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ACCATAAAAGG-CAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
FD537620       <-- ACCAGAAAAGC-CTGGTGAAACTGAAGGAGAAGTAGCCGTTGCACAAGGA
EV545092       <-- ACCAGAAAAGG-CAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
FD566333       <-- ACCAGAAAAGGGCAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
EV549664       --> ACCAGAAAA.........................................
FD562416       --> ACCAGAAAAGGGCAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
EX889463       --> ACCATAAAAGG-CAGGTGAAACCGAAGGAGAAGTAGCCGTTGCACAAGGA
FD541314       --> ACCAGAAAAGC-CTGGTGAAACTGAAGGAGAAGTAGCCGTTGCACAAGGA

               701    -    751
UN22632        --> AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAACAG
FD537620       <-- AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAAC-G
EV545092       <-- AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTTTTCATCTTGAATGAACAG
FD566333       <-- AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAACAG
EV549664       --> ..................................................
FD562416       --> AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAACAG
EX889463       --> AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAACAG
FD541314       --> AGCGCAGAAGGAGCAGAAGCAGAAGCGTCTTCTTCATCTTGAATGAAC-G

               751    -    801
UN22632        --> ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG
FD537620       <-- ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG
EV545092       <-- ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG
FD566333       <-- ACAATCAAGACTAAGCAGTTT-GTGGTGTGCGTAAGAGAGAGAGAGAGAG
EV549664       --> ..................................................
FD562416       --> ACAATCAAGACTAAGCAGTTT-GTGGTGTGCGTAAGAGAGAGAGAGAGAG
EX889463       --> ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG
FD541314       --> ACAATCAAGACTAAGCAGTTTTGTGGTGTGCGTAAGAGAGAGAGAGAGAG

               801    -    851
UN22632        --> AGAG--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- AGAG--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
FD537620       <-- AGAG--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
EV545092       <-- A--G--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
FD566333       <-- AGAGAGTGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
EV549664       --> ..................................................
FD562416       --> AGAGAGTGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
EX889463       --> AGAG--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT
FD541314       --> AGAG--TGAGAGAAGGGTCTGGTTAAGATTTAATTATTGGCATTGTTGTT

               851    -    901
UN22632        --> GTTGTTACACTAAATTACTTCTACAGAGTTTAGCGAAAATAGAATGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- GTTGTTACACTAAATTACTTCTACAGAGTTTAGCG...............
FD537620       <-- GTTGTTACACTAAATTACTTCTACAGAGTTTAGCGAAAATAGAATGAGAT
EV545092       <-- GTTGTTACACTAAATTATTTCTACAGAGTTTAGCGAAAATAGAATGAGAT
FD566333       <-- GTTGTTACACTAAATTATTTCTACAGAGTTTAGCGAAAATAGAATGAGAT
EV549664       --> ..................................................
FD562416       --> GTTGTTACACTAAATTATTTCTACAGAGTTTAGCGAAAATAGAATGAGAT
EX889463       --> GTTGTTACACTAAATTACTTCTACAGAGTTTAGCG...............
FD541314       --> GTTGTTACACTAAATTACTTCTACAGAGTTTAGCGAAAATAGAATGAGAT

               901    -    951
UN22632        --> TTTCTATCGAGATTGTTTTTTATTTCTTTTTAATTTAATACTGGAAGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893188       <-- ..................................................
FD537620       <-- TTTCTgttg.........................................
EV545092       <-- TTTCTATCG.........................................
FD566333       <-- TTTCTATCGAGATTGTTTTTTATTTCTTTTTAATTTAATACTGGAAGATA
EV549664       --> ..................................................
FD562416       --> TTTCTATCGAGATTG...................................
EX889463       --> ..................................................
FD541314       --> TTTCTgttg.........................................

               951    -   1001
UN22632        --> ATTGATTTTGCC
                   ~~~~~~~~~~~~
EX893188       <-- ............
FD537620       <-- ............
EV545092       <-- ............
FD566333       <-- ATTGATTTTGCC
EV549664       --> ............
FD562416       --> ............
EX889463       --> ............
FD541314       --> ............