RadishBase

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Alignment for radish unigene UN22659

               1      -     51
UN22659        --> CTAGAAATGTAAGCATTCTCTTAAAACGGTGATCATAAACGTTAAAAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- ..................................................
EV566283       <-- ..................................................
FD562352       <-- ..................................................
FD543103       <-- ..................................................
FD987753       <-- ..................................................
EX756913       <-- ..................................................
EX897421       <-- ..................................................
FD557600       <-- ..................................................
EX773091       <-- ..................................................
FD535304       <-- ..................................................
EV566663       <-- ..................................................
EY900941       <-- ..................................................
EV571450       --> CTAGAAATGTAAGCATTCTCTTAAAACGGTGATCATAAACGTTAAAAAGT
EV571742       --> CTAGAAATGTAAGCATTCTCTTAAAACGGTGATCATAAACGTTAAAAAGT
EX775576       --> ...GAAATGTAAGCATTCTCTTAAAACGGTGATCATAAACGTTAAAAAGT
FD553676       --> ...............aTCTCTTAAAACGGTGATCATAAACGTTAAAAAGT
EX901180       --> ................cCTCTTAAAACGGTGATCATAAACTTTAAAAAGT
FD530060       --> .................CTCTTAAAACGGTGATCATAAACGTTAAAAAGT
FD566282       --> ......................AAAACGGTGATCATAAACTTTAAATCGT
FD530993       --> ....................................AAACGTTAAAAAGT

               51     -    101
UN22659        --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- ..................................................
EV566283       <-- ..................................................
FD562352       <-- ..................................................
FD543103       <-- ..................................................
FD987753       <-- ..................................................
EX756913       <-- ..................................................
EX897421       <-- ..................................................
FD557600       <-- ..................................................
EX773091       <-- ..................................................
FD535304       <-- ..................................................
EV566663       <-- ..................................................
EY900941       <-- ..................................................
EV571450       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
EV571742       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
EX775576       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
FD553676       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
EX901180       --> TTCATAAACAAGAAAAATAAGATTCAAAAAGCAGTAAAACAGAATCCACC
FD530060       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC
FD566282       --> TTCATAAACAAGAAAAATAAGATTCAAAAAGCAGTAAAACAGAATCCACC
FD530993       --> TTCATAAACAAGAAAAATAAGATTCAGAAAGCAGTAAAACAGAATCCACC

               101    -    151
UN22659        --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- ......AACAATCTATGTGGATCATCGTCATAAACTAAAA-CACAAGACT
EV566283       <-- .............................ATAAACTAAAAACACAAGACT
FD562352       <-- ..................................................
FD543103       <-- ..................................................
FD987753       <-- ..................................................
EX756913       <-- ..................................................
EX897421       <-- ..................................................
FD557600       <-- ..................................................
EX773091       <-- ..................................................
FD535304       <-- ..................................................
EV566663       <-- ..................................................
EY900941       <-- ..................................................
EV571450       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
EV571742       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
EX775576       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
FD553676       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
EX901180       --> CAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACGAGACT
FD530060       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
FD566282       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT
FD530993       --> TAGATAAACAATCTATGTGGATCATCGTCATAAACTAAAAACACAAGACT

               151    -    201
UN22659        --> GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- GATGAGGTT-GCTTCTAA-GAAGAGACTCATGT-CTC-TAGAGATGGCCA
EV566283       <-- GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
FD562352       <-- ................AAAGAAGAGACTCAT-ATCTC-TAGAGATGGCCA
FD543103       <-- .....................................TTAGAGATGGCCA
FD987753       <-- ......................................TAGAGATGGCCA
EX756913       <-- ..................................................
EX897421       <-- ..................................................
FD557600       <-- ..................................................
EX773091       <-- ..................................................
FD535304       <-- ..................................................
EV566663       <-- ..................................................
EY900941       <-- ..................................................
EV571450       --> GATGAGGTTTGCTTCTAAAGAAAAGACTCATGTTCTCTTAAAGATGGCCA
EV571742       --> GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
EX775576       --> GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
FD553676       --> GATGAGGTTTACTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
EX901180       --> GATGAGGTTTGATTCTAAAGAAAAGACTCATGTTCTCTTAAAGATGGCCA
FD530060       --> GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA
FD566282       --> GATGAGGTTTGCTTCTAAAGAAAAGACTCATATTCTCTTAAAGATGGCCA
FD530993       --> GATGAGGTTTGCTTCTAAAGAAGAGACTCATGTTCTCTTAGAGATGGCCA

               201    -    251
UN22659        --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
EV566283       <-- TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
FD562352       <-- TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATATTCTTTATC
FD543103       <-- TCACATTGAAGTTGAGCGTGTCCGGAT-CTTCTCAATAATCTTCTTTATC
FD987753       <-- TCACATTAAAGT-GAGCGTGTC-GGA-TCTTCTCAATAATCTTCTTTATC
EX756913       <-- ...........................TCTTCTCAATAATCTTCTTTATC
EX897421       <-- ..........................gatcTCTCAATAATCT-C-TTATC
FD557600       <-- ...........................atcTCTCAATA-TC-TCTTTATC
EX773091       <-- .................................ttctcaatcTCTTTATC
FD535304       <-- ..................................................
EV566663       <-- ..................................................
EY900941       <-- ..................................................
EV571450       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
EV571742       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
EX775576       --> TCACACTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
FD553676       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
EX901180       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
FD530060       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC
FD566282       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATATTCTTTATC
FD530993       --> TCACATTAAAGTTGAGCGTGTCCGGATTCTTCTCAATAATCTTCTTTATC

               251    -    301
UN22659        --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. maritimus
EV566283       <-- ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
FD562352       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus sativus var. oleiformis
FD543103       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987753       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
EX756913       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897421       <-- ACTT-CGCCGCAT--CTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus sativus cv Early Scarlet Globe
FD557600       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
EX773091       <-- ACTTTCGCCGCATC-TTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
FD535304       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV566663       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY900941       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV571450       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
EV571742       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
EX775576       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
FD553676       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. landra
EX901180       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus sativus cv Early Scarlet Globe
FD530060       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. maritimus
FD566282       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus sativus var. oleiformis
FD530993       --> ACTTTCGCCGCATCCTTCAACAGGGTAGCTGGAGAGGAAGCACCATGTGA  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN22659        --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EV566283       <-- AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD562352       <-- AACTGGTC-TGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD543103       <-- AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD987753       <-- AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGTTCCCCGTTTACAC
EX756913       <-- AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EX897421       <-- AACTGGTCGTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTAC--
FD557600       <-- AACTGGTC-TGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EX773091       <-- AACTGGTC-TGCTTT-CTTC---CAAGTTCATAGAGCTCCCCGTTTACAC
FD535304       <-- ...........CTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EV566663       <-- ............TTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EY900941       <-- ..................................................
EV571450       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EV571742       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EX775576       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD553676       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
EX901180       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACA-
FD530060       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD566282       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC
FD530993       --> AACTGGTCCTGCTTTTCTTCCATCAAGTTCATAGAGCTCCCCGTTTACAC

               351    -    401
UN22659        --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EV566283       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD562352       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD543103       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD987753       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EX756913       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EX897421       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD557600       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EX773091       <-- AAGCTAAAACAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD535304       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EV566663       <-- AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EY900941       <-- ........................................CCGGTGTTTC
EV571450       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EV571742       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EX775576       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD553676       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
EX901180       --> -AGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD530060       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD566282       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC
FD530993       --> AAGCTAAA-CAGATGAAATGTGTGTTCACATCTTCTGAAGCCGGTGTTTC

               401    -    451
UN22659        --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EV566283       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD562352       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD543103       <-- ACCAGCTGTAACAGCTGCCGAATGAGCATCTTCAATTTGACTATCGTTCT
FD987753       <-- ACCAGCTGTAACAGCTGCCAAATGGGCATCTTCAATTTGACTATCGTTCT
EX756913       <-- ACCAGCTGTAACAGCTGCCGAATGAGCATCTTCAATTTGACTATCGTTCT
EX897421       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD557600       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EX773091       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD535304       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EV566663       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EY900941       <-- ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EV571450       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EV571742       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EX775576       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD553676       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
EX901180       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD530060       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD566282       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT
FD530993       --> ACCAGCTGTAACAGCTGCCGAATGGGCATCTTCAATTTGACTATCGTTCT

               451    -    501
UN22659        --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EV566283       <-- CAAGAAACCCTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD562352       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD543103       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCAGTGGTTTTGAAG
FD987753       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EX756913       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCAGTGGTTTTGAAG
EX897421       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD557600       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EX773091       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD535304       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EV566663       <-- CAAGAAACCCTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EY900941       <-- CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EV571450       --> CAAGAAACCCTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EV571742       --> CAAGAAACCCTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EX775576       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD553676       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
EX901180       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD530060       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG
FD566282       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAA
FD530993       --> CAAGAAACCTTCCACGCTCCATAGGACTCATCTTGGCGGTGGTTTTGAAG

               501    -    551
UN22659        --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. maritimus
EV566283       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
FD562352       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGGTAATGTT  Raphanus sativus var. oleiformis
FD543103       <-- AACTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGGTAATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987753       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
EX756913       <-- AACTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGGTAATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897421       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGGTAATGTT  Raphanus sativus cv Early Scarlet Globe
FD557600       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
EX773091       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
FD535304       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAAGGTT  Raphanus raphanistrum subsp. maritimus
EV566663       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
EY900941       <-- AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAACGTT  Raphanus raphanistrum subsp. maritimus
EV571450       --> AATTTATCCAAGAATGATCCCTCAAAAAGCTTGATTTCAAAGCTAATGTT  Raphanus raphanistrum subsp. landra
EV571742       --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
EX775576       --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
FD553676       --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. landra
EX901180       --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAAAGGTAATGTT  Raphanus sativus cv Early Scarlet Globe
FD530060       --> AATTTATCCAAGAATGATCCCTCAGAAAGCTTGATTTCAGAGCTAATGTT  Raphanus raphanistrum subsp. maritimus
FD566282       --> AATTTATCCAAGAATGATCCCTCAAAAAGCTTGATTTCAAAGGTAATGTT  Raphanus sativus var. oleiformis
FD530993       --> AATTTATCCAAGAATGATCCCTCAAAAAGCTTGATTTCAGAGCTAAGGTT  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN22659        --> GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EV566283       <-- GCCAACAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
FD562352       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCACAAGCATTACCAACAGTTT
FD543103       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
FD987753       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EX756913       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EX897421       <-- GCCGATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
FD557600       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EX773091       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTGCCAACAGTTT
FD535304       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EV566663       <-- GCCAACAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EY900941       <-- GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EV571450       --> GCCAACAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EV571742       --> GCCAACAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EX775576       --> GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
FD553676       --> GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT
EX901180       --> GCCGATAGCATGAAAAAAACCAATGGTTCCGCAAGCATTACCAACAGTTT
FD530060       --> GCCAATAGCATGAAGAAGACC.............................
FD566282       --> GCCAATAGCATGAAAAAAACCAATGGTTCCACAAGCATTACCAACAGTTT
FD530993       --> GCCAATAGCATGAAGAAGACCAATGGTTCCGCAAGCATTACCAACAGTTT

               601    -    651
UN22659        --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EV566283       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
FD562352       <-- GTTTCATGAAGTAAACTTTATCACTGTGCACCTTGTCCTTGATCTCCTTG
FD543103       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCCTCTCCTTGATCTCTTTA
FD987753       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EX756913       <-- GTTTCATGAAGTAAACTCTATCACTATGCACCCTCTCCTTGATCTCTTTA
EX897421       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
FD557600       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EX773091       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
FD535304       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCCCCTTG
EV566663       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EY900941       <-- GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EV571450       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EV571742       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EX775576       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
FD553676       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
EX901180       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCTCCTTG
FD530060       --> ..................................................
FD566282       --> GTTTCATGAAGTAAACTTTATCACTGTGCACCTTGTCCTTGATCTCCTTG
FD530993       --> GTTTCATGAAGTAAACTTTATCACTATGCACCTTCTCCTTGATCCCCTTG

               651    -    701
UN22659        --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. maritimus
EV566283       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
FD562352       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus sativus var. oleiformis
FD543103       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987753       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EX756913       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897421       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus sativus cv Early Scarlet Globe
FD557600       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EX773091       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
FD535304       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. maritimus
EV566663       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EY900941       <-- TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. maritimus
EV571450       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EV571742       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EX775576       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
FD553676       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus raphanistrum subsp. landra
EX901180       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus sativus cv Early Scarlet Globe
FD530060       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566282       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGGGGGTAAAGGAA  Raphanus sativus var. oleiformis
FD530993       --> TCTTGCTCGATTCTCTCTTCTTCACTCTTTTTGGTGAGCGGGTAAAGGAA  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN22659        --> GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EV566283       <-- GAGAACAGCAAGGACAGGCTTTGGAACCGTCTCAAGCAGTTCGTCATCTA
FD562352       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD543103       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD987753       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EX756913       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EX897421       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD557600       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EX773091       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD535304       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EV566663       <-- GAGAACAGCAAGGACAGGCTTTGGAACCGTCTCAAGCAGTTCGTCATCTA
EY900941       <-- GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
EV571450       --> GAGAACAGCAAGGACAGGCTTTGGAACCGTCTCAAGCAGTTCGTCATCTA
EV571742       --> GAGAACAGCAAGGACAGGCTTTGGAACCGTCTCAAGCAGTTCGTCATCTA
EX775576       --> GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD553676       --> GAGAACA...........................................
EX901180       --> GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD530060       --> ..................................................
FD566282       --> GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA
FD530993       --> GAGAACAGCAAGGACAGGCTTTGGAACCATCTCAAGCAGTTCGTCATCTA

               751    -    801
UN22659        --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EV566283       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD562352       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD543103       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD987753       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EX756913       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EX897421       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD557600       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EX773091       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD535304       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EV566663       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EY900941       <-- GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EV571450       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EV571742       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
EX775576       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD553676       --> ..................................................
EX901180       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGAC-AAGCCCC
FD530060       --> ..................................................
FD566282       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC
FD530993       --> GACCAAACACATCATTACACTCCACTTCATCTGGGGCAAGACCAAGCCCC

               801    -    851
UN22659        --> CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. maritimus
EV566283       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. landra
FD562352       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus sativus var. oleiformis
FD543103       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987753       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. landra
EX756913       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897421       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus sativus cv Early Scarlet Globe
FD557600       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. landra
EX773091       <-- CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGT...........  Raphanus raphanistrum subsp. landra
FD535304       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. maritimus
EV566663       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. landra
EY900941       <-- CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. maritimus
EV571450       --> CACATAAACTGATTCATAACATCGGGGTTAGCTTCGAGTGGAAGCCATCT  Raphanus raphanistrum subsp. landra
EV571742       --> CACATAAACTGATTCATA................................  Raphanus raphanistrum subsp. landra
EX775576       --> CACA-GAACTGAT-CATAACATCGGGGTTAGCTTCGAGTG-AAG-CATCT  Raphanus raphanistrum subsp. landra
FD553676       --> ..................................................  Raphanus raphanistrum subsp. landra
EX901180       --> CACAGAAACTGATTCATAACATCGGGGTTAGCTTCGAGTG-AAG-CATCT  Raphanus sativus cv Early Scarlet Globe
FD530060       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566282       --> CACAGAAACT........................................  Raphanus sativus var. oleiformis
FD530993       --> CACATAAACTGATTCATAACATCGG.........................  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN22659        --> CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. maritimus
EV566283       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. landra
FD562352       <-- CTTAGCTGATGAACTCTCGTCTACGGTCGCCATCTT-AA-GGATCGTCTG  Raphanus sativus var. oleiformis
FD543103       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTT-AA-GGATCGTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987753       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. landra
EX756913       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTT-AA-GGATCGTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897421       <-- CTTAGCTGATGAACTCTCGTCTACGGTCGCCATCTTAAAGG-ATCGTCTG  Raphanus sativus cv Early Scarlet Globe
FD557600       <-- CTTAGCTGATGAACTCTCGTCTACGGTCGCCATCTT-AA-GGATCGCCTG  Raphanus raphanistrum subsp. landra
EX773091       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD535304       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. maritimus
EV566663       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. landra
EY900941       <-- CTTAGCTGAAGAACTCTCGTCTACGGTCGCCATCTTTAAGGGATCGTCTG  Raphanus raphanistrum subsp. maritimus
EV571450       --> CTTA..............................................  Raphanus raphanistrum subsp. landra
EV571742       --> ..................................................  Raphanus raphanistrum subsp. landra
EX775576       --> CT-AGCTGA.........................................  Raphanus raphanistrum subsp. landra
FD553676       --> ..................................................  Raphanus raphanistrum subsp. landra
EX901180       --> CT-AGCTGATG-ACTCTCGTCTACG.........................  Raphanus sativus cv Early Scarlet Globe
FD530060       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD566282       --> ..................................................  Raphanus sativus var. oleiformis
FD530993       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN22659        --> TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD534028       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTcc.............
EV566283       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
FD562352       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
FD543103       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTA-GAAGAAACGAATC
FD987753       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGA........
EX756913       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTA-GAAGAAACGAATC
EX897421       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
FD557600       <-- TCTTTCGATAGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
EX773091       <-- ..................................................
FD535304       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
EV566663       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAA..
EY900941       <-- TCTTTCGATCGGTGTTCGTAGAAGAAATCAAATCTATGAAGAAACGAATC
EV571450       --> ..................................................
EV571742       --> ..................................................
EX775576       --> ..................................................
FD553676       --> ..................................................
EX901180       --> ..................................................
FD530060       --> ..................................................
FD566282       --> ..................................................
FD530993       --> ..................................................

               951    -   1001
UN22659        --> GCTCCC
                   ~~~~~~
FD534028       <-- ......
EV566283       <-- cc....
FD562352       <-- cc....
FD543103       <-- cc....
FD987753       <-- ......
EX756913       <-- cc....
EX897421       <-- cc....
FD557600       <-- cc....
EX773091       <-- ......
FD535304       <-- GCTCCC
EV566663       <-- ......
EY900941       <-- GCTCC.
EV571450       --> ......
EV571742       --> ......
EX775576       --> ......
FD553676       --> ......
EX901180       --> ......
FD530060       --> ......
FD566282       --> ......
FD530993       --> ......