1      -     51
UN22738        --> GATTAAATAACAATTTTTAAATTAGAAATATAAAGATGAAAATATTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- ..................................ggTGAAAATATTCTTA
EW724213       <-- ..................................................
EY925307       <-- ..................................................
EX773637       <-- ..................................................
EY917254       <-- ..................................................
EW728812       --> GATTAAATAACAACTTTTAAATTAGAAATATAAAGATGAAAATATTCTTA
EY912802       --> ...gAAATAACAATTTTTAAATTAGAAATATAAAGATGAAAATATTCTTA
FD553867       --> ..................................ggTGAAAATATTCTTA
EY920813       --> ................................................TA
EX777459       --> .................................................A

               51     -    101
UN22738        --> AACATGAAACGGTTTTGATCAAGATCCCAAAGTGTCAAAAAACTTCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- AACATGAAACGGTTTTGATCAAGATCCCAAAGTGTCAAAAAACTTCATTA
EW724213       <-- ............gTTTGATCAAGATCCCAAAGTGTCAAAAAACTAAATTA
EY925307       <-- ...............................GTGTCAAAAA-CTTCATTA
EX773637       <-- ..................................................
EY917254       <-- ..................................................
EW728812       --> AACATGAAACGGGTTTGATCAAGATCCCAAAGTGTCAAAAAACTAAATTA
EY912802       --> AACATGAAACGGTTTTGATCAAGATGCCAAAGTGTCAAAAAACTTCATTA
FD553867       --> AACATGAAACGGTTTTGATCAAGATCCCAAAGTGTCAAAAAACTTCATTA
EY920813       --> AACATGAAACGGTTTTGATCAAGATGCCAAAGTGTCAAAAAACTTCATTA
EX777459       --> AACATGAAACGGTTTTGATCAAGATCCCAAAGTGTCAAAAAACTTCATTA

               101    -    151
UN22738        --> AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG
EW724213       <-- AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG
EY925307       <-- AAAGATACGGACATCTTCTGAAACACGTCCAAAGCTCTA-TGAGAAACAG
EX773637       <-- ..........................ATCCAAAGCTCTA-TGAGAAACAG
EY917254       <-- ..................................................
EW728812       --> AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG
EY912802       --> AAAGAGACGGACATCTTCCGAAACACATCCAAAGCTCTAATGAGAAACAG
FD553867       --> AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG
EY920813       --> AAAGATACGGACATCTTCTGAAACACGTCCAAAGCTCTAATGAGAAACAG
EX777459       --> AAAGATACGGACATCTTCTGAAACACATCCAAAGCTCTAATGAGAAACAG

               151    -    201
UN22738        --> TAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGACGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- TAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGACGATCT
EW724213       <-- CAAAATAAGGTCTTTGAGATGTGGTGCAAACTCAGGGCATAGGACGATCT
EY925307       <-- TAAA-TAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGACGATCT
EX773637       <-- TAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGAAGATCT
EY917254       <-- ..................................................
EW728812       --> CAAAATAAGGTCTTTGAGATGTGGTGCAAACTCAGGGCATAGGACGATCT
EY912802       --> CAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGACGATCT
FD553867       --> TAAAATAAGGTCTTTGAAATGTAGTGCAAACTCAAGGCATAGGACGATCT
EY920813       --> TAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGACGATCT
EX777459       --> TAAAATAAGGTCTTTGAGATGTAGTGCAAACTCAAGGCATAGGAAGATCT

               201    -    251
UN22738        --> TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA
EW724213       <-- TCTTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATC-TTCTTCTTGA
EY925307       <-- TC-TTAACGGTTGGCCTTTGCAATTCTCTCAATCTCATCCTTCTTCTTGA
EX773637       <-- TCTTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATC-TTCTTCTTGA
EY917254       <-- ..........................................CTTCTTGA
EW728812       --> TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA
EY912802       --> TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA
FD553867       --> TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA
EY920813       --> TCCTTAACGGTTGGCCTTTGCAATTCTCTCAATCTCATCCTTCTTCTTGA
EX777459       --> TCCTTAACGGTTGGCCTTTGCAACTCTCTCAATCTCATCCTTCTTCTTGA

               251    -    301
UN22738        --> TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
EW724213       <-- TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
EY925307       <-- TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATTAGCTCATCAGCA
EX773637       <-- TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
EY917254       <-- TAGCATAGCTGTTGGAAGAACCCCTGGCAGCATTGATGAGCTCATCAGCA
EW728812       --> TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
EY912802       --> TAGCATAGCTGTTGGAAGAACCCCTGGCAGCATTGATGAGCTCATCAGCA
FD553867       --> TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA
EY920813       --> TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATTAGCTCATCAGCA
EX777459       --> TAGCATAGCTGTTGGAAGATCCCTTGGCAGCATTGATGAGCTCATCAGCA

               301    -    351
UN22738        --> AGGCACTCAGCGATGGTCTTGATGTTTCTAAACGCAGCTTCACGTGCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- AGGCACTCAGCGATGGTCGTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. landra
EW724213       <-- AGGCACTCAGCGATTGTCTTGATGTTTCTAAAGGCAGCTTCACGTGCGCC  Raphanus sativus cv Early Scarlet Globe
EY925307       <-- AGGCACTCAGCGATCGTCTTGATGTTTCTAAACGCAGCTTCACGTGCGCC  Raphanus raphanistrum subsp. landra
EX773637       <-- AGGCACTCAGCGATGGTCTTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. landra
EY917254       <-- AGGCACTCAGCGATGGTCTTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728812       --> AGGCACTCAGCGATTGTCTTGATGTTTCTAAAGGCAGCTTCACGTGCGCC  Raphanus sativus cv Early Scarlet Globe
EY912802       --> AGGCACTCAGCGATGGTCTTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553867       --> AGGCACTCAGCGATGGTCGTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. landra
EY920813       --> AGGCACTCAGCGATCGTCTTGATGTTTCTAAACGCAGCTTCACGTGCGCC  Raphanus raphanistrum subsp. landra
EX777459       --> AGGCACTCAGCGATGGTCTTGATGTTTCTAAACGCAGCTTCACGTGCACC  Raphanus raphanistrum subsp. landra

               351    -    401
UN22738        --> GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTTAGAGGAGAGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTTAGAGGAGAGATAT  Raphanus raphanistrum subsp. landra
EW724213       <-- AGTAGTGAGTAAGAAGATGGCTTGGTTCACACGTCTCAGAGGAGAGATAT  Raphanus sativus cv Early Scarlet Globe
EY925307       <-- AGTAGTGAGTAAGAAGATGGCTTGGTTCACACGTCTCAGAGGAGAGATAT  Raphanus raphanistrum subsp. landra
EX773637       <-- GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTTAGAGGAGAGACAT  Raphanus raphanistrum subsp. landra
EY917254       <-- GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTCAGAGGAGAGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW728812       --> AGTAGTGAGt........................................  Raphanus sativus cv Early Scarlet Globe
EY912802       --> GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTc.............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD553867       --> GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTTAAAGGA.......  Raphanus raphanistrum subsp. landra
EY920813       --> AGTAGTGAGTAAGAAGATGGCTTGGTTCACACGTCTCAGAGGAGAGATAT  Raphanus raphanistrum subsp. landra
EX777459       --> GGTGGTGAGCAAGAAGATGGCTTGGTTCACACGTCTTAAAGGAGAGACAT  Raphanus raphanistrum subsp. landra

               401    -    451
UN22738        --> CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EW724213       <-- CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EY925307       <-- CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EX773637       <-- CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EY917254       <-- CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT
EX777459       --> CAACAGCCTGCCTCCTAACCACACCAGCAGATCCAATCCTGGTGGCATCT

               451    -    501
UN22738        --> TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
EW724213       <-- TCACGTGGACCACTGTTGACAATGGCATCAATGATGACCTGAATTGGGTT
EY925307       <-- TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
EX773637       <-- TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
EY917254       <-- TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT
EX777459       --> TCACGTGGACCACTGTTGACAATGGCATCGATGATGACCTGAATTGGGTT

               501    -    551
UN22738        --> CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EW724213       <-- CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EY925307       <-- CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EX773637       <-- CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EY917254       <-- CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA
EX777459       --> CAAGTCAGTCAAGAGATGGATGATCTCCATGGCGTGCTTGATGATCCTCA

               551    -    601
UN22738        --> CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EW724213       <-- CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EY925307       <-- CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EX773637       <-- CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EY917254       <-- CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT
EX777459       --> CAGCCATCAGCTTCTTACCGTTGTTCCTCCCGTGCATCATGAGAGAGTTT

               601    -    651
UN22738        --> GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA
EW724213       <-- GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA
EY925307       <-- GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA
EX773637       <-- GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA
EY917254       <-- GTGAGCCTCTCGACGATTGGGCATTGAGCCTTTCTGAACCTCTTCACAGA
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> GTGAGCCTCTCGA.....................................
EX777459       --> GTGAGCCTCTCGACGATTGGGCATTGAGCCTTCCTGAACCTCTTCACAGA

               651    -    701
UN22738        --> GTACCTTCCAGCAGTGTGGGGGACAAAGGTCGCGTGCTTAGCTGGCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- GTACCTTCCAGCAGTGTGGGGGACAAAGGTCGCGTGCTTAGCTGGCTGAA
EW724213       <-- GTATCTTCCAGCAGTGTGGGGGACAAAGGTTGCGTGCTTAGCAGGCTGCA
EY925307       <-- GTACCTTCCAGCAGTGTGGGGGACAAAGGTCGCGTGCTTAGCTGGCTGAA
EX773637       <-- GTACCTTCCAGCAGTGTGGGGGACAAAGGTCGCGTGCTTAGCTGGCTGAA
EY917254       <-- GTATCTTCCAGCAGTGTGGGGCACAAAGGTCGCATGCTTAGCTGGCTGAA
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> ..................................................
EX777459       --> GTACCTTCCAGCAGTGTGGGGGACAAAGGTCGCGTGCTTAGCTGGCTGAA

               701    -    751
UN22738        --> CACCAATGTAGTCAACAAGACTAATGTCTGTGACCGAAACGTCGTCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- CACCAATGTAGTCAACAAGACTAATGTCTGTGc.................
EW724213       <-- CACCAATGTAGTCAACAAGACTAATGTCTGTGACCGAAACGTCGTCAAAG
EY925307       <-- CACCAATGTAGTCAACAAGACTAATGTCTATGACCGAAACGTCGTCAAAG
EX773637       <-- CACCAATGTAGTCAACAAGACTAATGTCTGTGACCGAAACGTCGTCAAAG
EY917254       <-- CACCAATGTAGTCAACAAGACTAATGTCTGTGACCGAAACGTCATCAAAG
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> ..................................................
EX777459       --> CACCAATGTAGTCAACAAGACTAATGTCTGTGACCGAAACGTCGTCAAAG

               751    -    801
UN22738        --> CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- ..................................................
EW724213       <-- CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATCTC
EY925307       <-- CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATCTC
EX773637       <-- CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATC..
EY917254       <-- CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATCTC
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> ..................................................
EX777459       --> CTCCAACGGTTGAAGAGCTTGACCTCGTTGGTAAGCTGTTGCTGAATCTC

               801    -    851
UN22738        --> AGCGTCAATCTCTGCGGCGGCGGCCATGGCTCGTAGTAAGTGTCGTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- ..................................................
EW724213       <-- AGCGTCAATCTCTGCGGCGGCGGCAATGGCTCGTAGTAAGTGTCGTTTGG
EY925307       <-- AGCGTCAATCTCAGCGGCGGCGGCCATGGCTCGTAGTAAGTGTCGTCGTG
EX773637       <-- ..................................................
EY917254       <-- AGCGTCAATCTCTGCGGCGGCGGCCATGGCTCGTAGTAAGTGTCGTTTGG
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> ..................................................
EX777459       --> AGCGTCAtctc.......................................

               851    -    901
UN22738        --> AGAAGAAGAGAACAACTAGGTTAACGCGGCTTGCTGCTCGGAGAAAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD557840       <-- ..................................................
EW724213       <-- AGAAGAAGAGAACAACTAGGTTAACGCGGCTTGCTGCTCGGA........
EY925307       <-- AGGAGAAGAGAACAATTAGGTTAACGCAGCTTGCTGCTTGGAGAAggtcc
EX773637       <-- ..................................................
EY917254       <-- AGAAGAAGAGAACAACTAGGTTAACGCGGCTTGCTGCTCGGAGAAAAGGT
EW728812       --> ..................................................
EY912802       --> ..................................................
FD553867       --> ..................................................
EY920813       --> ..................................................
EX777459       --> ..................................................

               901    -    951
UN22738        --> CC
                   ~~
FD557840       <-- ..
EW724213       <-- ..
EY925307       <-- ..
EX773637       <-- ..
EY917254       <-- CC
EW728812       --> ..
EY912802       --> ..
FD553867       --> ..
EY920813       --> ..
EX777459       --> ..