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Alignment for radish unigene UN22829

               1      -     51
UN22829        --> GGGAGAGTATTGAAAAATATCAAGTTGCAACTTTCAGCAATCTCTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- ..................................................
EW718625       <-- ..................................................
EY918676       <-- ..................................................
FD985264       <-- ..................................................
FD986045       <-- ..................................................
EV573816       <-- ..................................................
FD958597       <-- ..................................................
FD984027       <-- ..................................................
EX774751       <-- ..................................................
FD556867       --> GGGAGAGTATTGAAAAATATCAAGTTGCAACTTTCAGCAATCTCTCTTTT
FD961948       --> ..........................GCAACTTTCAGCAATCTCTCTTTT
EW713505       --> ................................................gg
EW713506       --> ................................................gg
EY922770       --> ..................................................
FD989491       --> ..................................................
EV569228       --> ..................................................
FD988085       --> ..................................................
FD990326       --> ..................................................

               51     -    101
UN22829        --> TTTGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EW718625       <-- .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EY918676       <-- .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD985264       <-- .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD986045       <-- .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EV573816       <-- ...........ggAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD958597       <-- .............................TCGCACTATCTTAGGGTTTCG
FD984027       <-- ..................................ggATCTTAGGGTTTCG
EX774751       <-- .......................................ggAGGGTTTCG
FD556867       --> TTTTTCTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD961948       --> TTTGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EW713505       --> gggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EW713506       --> gggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EY922770       --> .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD989491       --> .ggGTTTTCCCCCAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
EV569228       --> ...........ggAAATTGGACCTCTTCGTCGCACTATCTTAGGGTTTCG
FD988085       --> ..................................ggATCTTAGGGTTTCG
FD990326       --> ..................................................

               101    -    151
UN22829        --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EW718625       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EY918676       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD985264       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACGGCAATGGGG
FD986045       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EV573816       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD958597       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD984027       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EX774751       <-- TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD556867       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD961948       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EW713505       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EW713506       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
EY922770       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD989491       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACGGCAATGGGG
EV569228       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD988085       --> TATTTCGCTCTTCCTCGAGGAATCGATCTTGCGCAGTTACAGCAATGGGG
FD990326       --> ..................................................

               151    -    201
UN22829        --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EW718625       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EY918676       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD985264       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD986045       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EV573816       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD958597       <-- AAAAGGAAGTCAAGGGCAAAGCTTGCTACAACGAAGCGTATGGACAAGCT
FD984027       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EX774751       <-- AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD556867       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD961948       --> AAAAGGAAGTCAAGGGCAAAGCTTGCTACAACGAAGCGTATGGACAAGCT
EW713505       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EW713506       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EY922770       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD989491       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
EV569228       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD988085       --> AAAAGGAAGTCAAGGGCAAAGCCTGCTACAACGAAGCGTATGGACAAGCT
FD990326       --> ..................................................

               201    -    251
UN22829        --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EW718625       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EY918676       <-- TGACACTGTCTTTAGTCGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD985264       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD986045       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EV573816       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD958597       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD984027       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EX774751       <-- TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD556867       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD961948       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EW713505       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EW713506       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EY922770       --> TGACACTGTCTTTAGTCGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD989491       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
EV569228       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD988085       --> TGACACTGTCTTTAGTTGTCCTTTCTGCAATCACGGCTCTAGTGTCGAAT
FD990326       --> ..................................................

               251    -    301
UN22829        --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EW718625       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EY918676       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD985264       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD986045       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EV573816       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD958597       <-- GCCAAATTGATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD984027       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EX774751       <-- GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD556867       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTTT
FD961948       --> GCCAAATTGATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EW713505       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EW713506       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EY922770       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD989491       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
EV569228       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD988085       --> GCCAAATTAATATGAAGGAGATGATTGGTATTGCAACTTGTAGAATCTGT
FD990326       --> ..................................................

               301    -    351
UN22829        --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EW718625       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EY918676       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
FD985264       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
FD986045       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EV573816       <-- GAAGAAAGCTTTAGCACAACTATCACAGCTTTGAGTGAAGCTATAGACAT
FD958597       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
FD984027       <-- GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EX774751       <-- GAAGAAAGCTTTAGCACAACTATCACAGCTTTGAGTGAAGCTATAGACAT
FD556867       --> GAAGAAAGCTTTAGCACAACTATCACAGCTTTGAGTGAAGCTATAGACAT
FD961948       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EW713505       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EW713506       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EY922770       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
FD989491       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
EV569228       --> GAAGAAAGCTTTAGCACAACTATCACAGCTTTGAGTGAAGCTATAGACAT
FD988085       --> GAAGAAAGCTTTAGCACAACTATTACAGCTTTGAGTGAAGCTATAGACAT
FD990326       --> ..................................................

               351    -    401
UN22829        --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EW718625       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EY918676       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
FD985264       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
FD986045       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EV573816       <-- CTATAGCGAATGGATTGACGAGTGTGAGAGGGTTAACACTGTGGAAGATG
FD958597       <-- CTATAGTGAATGGATTGGCGAGTGCGAGAGGGTTAACACTGTGGAAGATG
FD984027       <-- CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EX774751       <-- CTATAGCGAATGGATTGACGAGTGTGAGAGGGTTGACACTGTGGAAGATG
FD556867       --> CTATAGCGAATGGATTGACGAGTGTGAGAGGGTTAACACTGTGGAAGATG
FD961948       --> CTATAGTGAATGGATTGGCGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EW713505       --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EW713506       --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EY922770       --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
FD989491       --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
EV569228       --> CTATAGCGAATGGATTGACGAGTGTGAGAGGGTTAACACTGTGGAAGATG
FD988085       --> CTATAGTGAATGGATTGACGAGTGCGAGAGGGTTAACACTGTGGAAGATG
FD990326       --> ..................................................

               401    -    451
UN22829        --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTGTGAAGAA  Raphanus sativus var. oleiformis
EW718625       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTGTGAAGAA  Raphanus sativus var. oleiformis
EY918676       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD985264       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD986045       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
EV573816       <-- ATGTTGAGCAAGAAGAAGCTGAAGCTGAAGAAGAAGAAGTTTATGGAGAA  Raphanus raphanistrum subsp. landra
FD958597       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. maritimus
FD984027       <-- ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
EX774751       <-- ATGTTGAGCAAGAAGAAGCTGAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD556867       --> ATGTTGAGCAAGAAGAAGCTGAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD961948       --> ATGTTGAGCAAGAAGA-G................................  Raphanus raphanistrum subsp. maritimus
EW713505       --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTGTGAAGAA  Raphanus sativus var. oleiformis
EW713506       --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTGTGAAGAA  Raphanus sativus var. oleiformis
EY922770       --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD989491       --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
EV569228       --> ATGTTGAGCAAGAAGAAGCTGAAGCTGAAGAAGAAGAAGTTTATGGAGAA  Raphanus raphanistrum subsp. landra
FD988085       --> ATGTTGAGCAAGAAGA-G--GAAGCTGAAGAAGAAGAAGTTTATGAAGAA  Raphanus raphanistrum subsp. landra
FD990326       --> ..................................................  Raphanus raphanistrum subsp. landra

               451    -    501
UN22829        --> GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- GAGGAAGAAGGAGACGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus sativus var. oleiformis
EW718625       <-- GAGGAAGAAGGAGACGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus sativus var. oleiformis
EY918676       <-- GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD985264       <-- GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD986045       <-- GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
EV573816       <-- GAGGAAGAAGAAGATGATGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD958597       <-- GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. maritimus
FD984027       <-- GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
EX774751       <-- GAGGAAGAAGAAGATGATGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD556867       --> GAGGAAGAAGAAGATGATGAGTAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD961948       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW713505       --> GAGGAAGAAGGAGACGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus sativus var. oleiformis
EW713506       --> GAGGAAGAAGGAGACGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus sativus var. oleiformis
EY922770       --> GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD989491       --> GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
EV569228       --> GAGGAAGAAGAAGATGATGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD988085       --> GAGGAAGAAGAAGATGAAGAGGAAGATGACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra
FD990326       --> ...........................GACCGTGTGTCTGTCAAAAGGAA  Raphanus raphanistrum subsp. landra

               501    -    551
UN22829        --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCC.................
EW718625       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
EY918676       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
FD985264       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
FD986045       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
EV573816       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCGAAAAAACCAGGCAAGTC
FD958597       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
FD984027       <-- GTTTAACTACCGAGACGATTAATttt........................
EX774751       <-- GTTTAACTACCGAGACGATTAATCTTTT-ATCGAAAAA-CCAGGCAAGTC
FD556867       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCGAAAAA-CCAGGCAAGTC
FD961948       --> ..................................................
EW713505       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
EW713506       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
EY922770       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
FD989491       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
EV569228       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCGAAAAAACCAGGCAAGTC
FD988085       --> GTTTAACTACCGAGACGATTAATCTTTT-ATCCAAAAAACCAGGCAAGTC
FD990326       --> GTTTAACTACCGAGACGATTAATCTTTTTATCCAAAAAACCAGGCAAGTC

               551    -    601
UN22829        --> CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- ..................................................
EW718625       <-- CTGTTAGACATTT-GCCTTT--GTATTCTAGTATCTATCTATCTGTTGGA
EY918676       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
FD985264       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
FD986045       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
EV573816       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGAAGAA
FD958597       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
FD984027       <-- ..................................................
EX774751       <-- CTGTTAGACATTT-GCCTTTT-GTATTCTAGTA.................
FD556867       --> CTGTTAGACATTT-GCCTTTT-GTATCCTAGTATCTATCTATCTGAA--A
FD961948       --> ..................................................
EW713505       --> CTGTTAGACATTT-GCCTTT--GTATTCTAGTATCTATCTATCTGTTGGA
EW713506       --> CTGTTAGACATTT-GCCTTT--GTATTCTAGTATCTATCTATCTGTTGGA
EY922770       --> CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
FD989491       --> CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
EV569228       --> CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGAAGAA
FD988085       --> CTGTTAGACATTT-GCCTTTT-GTATTCTAGTATCTATCTATCTGTTGGA
FD990326       --> CTGTTAGACATTTTGCCTTTTTGTATTCTAGTATCTATCTATCTGTTGGA

               601    -    651
UN22829        --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- ..................................................
EW718625       <-- AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
EY918676       <-- AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
FD985264       <-- AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
FD986045       <-- AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
EV573816       <-- AATTGCAAGAACAGTCTCTAGTGTTTTCTCAGTGTCTGGTgtgatggttg
FD958597       <-- AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
FD984027       <-- ..................................................
EX774751       <-- ..................................................
FD556867       --> AATTGCAAGAACAGTCTCTAGTGTTTTCTCAGTGTCTGGTgtgatggttg
FD961948       --> ..................................................
EW713505       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
EW713506       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
EY922770       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
FD989491       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
EV569228       --> AATTGCAAGAACAGTCTCTAGTGTTTTCTCAGTGTCTGGTgtgatggttg
FD988085       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA
FD990326       --> AATTGCAAGAACAGTCTTTAGTGTTTTCTCAGTGTCTGGTAAAAGAACAA

               651    -    701
UN22829        --> CAGTTTGTGATGGTTGCCAAATGAATTAAAAAGCCTTTACCAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718365       <-- .................................................
EW718625       <-- CAGTTTGTGATGGTTGCCAAATGAATT......................
EY918676       <-- CAGTTTGTGATGGTTGCCAAATGAATT......................
FD985264       <-- CAGTTTGTGATGGTTGCCAAATGAATT......................
FD986045       <-- CAGTTTGTGATGGTTGCCAAATGAATT......................
EV573816       <-- ccaaatgaa........................................
FD958597       <-- CAGTTTGTGATGGTTGCCAAATGAATT......................
FD984027       <-- .................................................
EX774751       <-- .................................................
FD556867       --> ccaaatgaattaaa...................................
FD961948       --> .................................................
EW713505       --> CAGTTTGTGATGGTTGCCAAATGAATT......................
EW713506       --> CAGTTTGTGATGGTTGCCAAATGAATTAAAAAGCCTTTAC.........
EY922770       --> CAGTTTGTGATGGTTGCCAAATGAATT......................
FD989491       --> CAGTTTGTGATGGTTGCCAAATGAATTAAAAAGCCTTTACCAAAAAAAA
EV569228       --> ccaaatgaa........................................
FD988085       --> CAGTTTGTGATGGTTGCCAAATGAATT......................
FD990326       --> CAGTTTGTGATGGTTGCCAAATGAATT......................