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Alignment for radish unigene UN22874

               1      -     51
UN22874        --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- ..................................................  Raphanus sativus cv GSK3-1
EV540681       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- ..................................................  Raphanus sativus var. oleiformis
FY430501       <-- ..................................................  Raphanus sativus cv GSK3-1
FD976076       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW730497       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- ..................................................  Raphanus sativus var. oleiformis
EY912787       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572495       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944326       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD575310       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV533073       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. maritimus
EV536169       --> GGACTCTCACATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> GGACTCTCA-ATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. landra
EW726317       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus sativus cv Early Scarlet Globe
EX757493       --> GGACTCTCACATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus sativus var. oleiformis
EY917239       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> GGACTCTCACATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> GGACTCTCACATCAAAACAATCAAACAACACGCAGAGCTAGCTACTTCAA  Raphanus sativus cv Early Scarlet Globe
FD948564       --> GGACTCTCACATCAAAACGATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus sativus cv Early Scarlet Globe
FD956081       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> GGACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. maritimus
EY924951       --> .GACTCTCACATCAAAACAATCAAACAACACACAGAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. landra
EY914461       --> ........ggATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> .......gggATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> ........ggATCAAAACAATCAAACAACACACACAGCTAGCTACTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> .....................CAAACAACACACAGAGCTAGCTACTTCAA  Raphanus sativus var. oleiformis
EV536534       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> ..................................................  Raphanus raphanistrum subsp. landra
FD533775       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX755157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526316       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD557717       --> ..................................................  Raphanus raphanistrum subsp. landra
FD571482       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               51     -    101
UN22874        --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- ..................................................
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
EV536169       --> CCAAATACTTTCAAAGAAGAGAGAGAGA----TGGAGAAGAACATTAGGT
EV567580       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
EW726317       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGA--TGGAGAAGAACATTAAGT
EX757493       --> CCAAATACTTTCAAAGAAGAGAGAGAGA----TGGAGAAGAACATTAGGT
EX889724       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
EY917239       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGCACATTAAGT
FD544244       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGA--TGGACAAGAACATTAAGT
FD570104       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
FD948564       --> CCAAATACTCTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
FD956081       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
FD964280       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
EY924951       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGA--TGGAGAAGAACATTAAGT
EY914461       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGA--TGGACAAGAACATTAAGT
FD970413       --> CCAAATACTTTCAAAGAAGAGAGAGAGA----TGGAGAAGAACATTAGGT
FD970679       --> CCAAATACTTTCAAAGAAGAGAGAGAGAGA--TGGACAAGAACATTAAGT
EX887057       --> CCAAATAC--CAAAAGAAGAGAGAGAGAGAGATGGAGAAGAACATTAAGT
EV536534       --> ............ggaaagaAGAGAGAGAGAGATGGACAAGAACATTAAGT
FD980140       --> ..........................................CATTAAGT
FD989116       --> ..................................................
FD533775       --> ..................................................
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               101    -    151
UN22874        --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- ..................................................
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EV536169       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EV567580       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EW726317       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EX757493       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EX889724       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EY917239       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGATACCAAACC
FD544244       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD570104       --> TTCCAGTTGTAGACTTGCCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD948564       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD956081       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD964280       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EY924951       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EY914461       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD970413       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD970679       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EX887057       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
EV536534       --> TTCCAGTTTTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD980140       --> TTCCAGTTGTAGACTTGTCCAAGCTCATTGGTGAAGAGAGAGACCAAACC
FD989116       --> ..................................................
FD533775       --> ..................................................
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               151    -    201
UN22874        --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ...........CAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- ..................................................  Raphanus sativus cv GSK3-1
EV540681       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- ..................................................  Raphanus sativus var. oleiformis
FY430501       <-- ..................................................  Raphanus sativus cv GSK3-1
FD976076       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW730497       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- ..................................................  Raphanus sativus var. oleiformis
EY912787       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572495       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944326       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD575310       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV533073       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. maritimus
EV536169       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. landra
EW726317       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus cv Early Scarlet Globe
EX757493       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> ACGGCTTCAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus var. oleiformis
EY917239       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus cv Early Scarlet Globe
FD948564       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus cv Early Scarlet Globe
FD956081       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. maritimus
EY924951       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTTAGATAGT  Raphanus raphanistrum subsp. landra
EY914461       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus sativus var. oleiformis
EV536534       --> ATGGCTTTGATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> ATGGCTTTAATCAACAATGCTTGTGAGAATTGGGGCTTCTTTGAGATAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> .......................................TTTGAGATAGT  Raphanus raphanistrum subsp. landra
FD533775       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX755157       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526316       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD557717       --> ..................................................  Raphanus raphanistrum subsp. landra
FD571482       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               201    -    251
UN22874        --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FY445904       <-- ..................................................
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EV536169       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EV567580       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EW726317       --> GAACCATGGTTTACCACATCATTTGATGGACAACGTCGAGAAGATGACAA
EX757493       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EX889724       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EY917239       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD544244       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD570104       --> GAACCATGGTTTACCACATGATTTGATGGACATCGTCGAGAAGATGACAA
FD948564       --> GAACCATGGTTTACCA-ATGATTTGATGGACATCGTCGAGAAGATGACAA
FD956081       --> GAACCATGGTGTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD964280       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EY924951       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCTAGA.........
EY914461       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD970413       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD970679       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EX887057       --> GAACCATGGTGTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
EV536534       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD980140       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD989116       --> GAACCATGGTTTACCACATGATTTGATGGACAACGTCGAGAAGATGACAA
FD533775       --> ..................................................
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               251    -    301
UN22874        --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FY445904       <-- ..................................................
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EV536169       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACGTGCTCAAG
EV567580       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EW726317       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EX757493       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EX889724       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EY917239       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD544244       --> AGGAGCATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD570104       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD948564       --> AGGAACATCACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD956081       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD964280       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EY924951       --> ..................................................
EY914461       --> AGGAGCATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD970413       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD970679       --> AGGAGCATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EX887057       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
EV536534       --> AGGAGCATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD980140       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD989116       --> AGGAACATTACAAGAAATCAATGGAACAAAAGTTCAACGACATGCTCAAG
FD533775       --> .....................................gGACATGCTCAAG
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               301    -    351
UN22874        --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FY445904       <-- ..................................................
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EV536169       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EV567580       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EW726317       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EX757493       --> TCCAAAGGTTTGGAAAATCTTGATAGAGAAGTTGAGGATGTCGATTGGGA
EX889724       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EY917239       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD544244       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD570104       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD948564       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD956081       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD964280       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGG-A
EY924951       --> ..................................................
EY914461       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD970413       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD970679       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EX887057       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EV536534       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD980140       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD989116       --> TCCAAAGGTCTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
FD533775       --> TCCAAAGGTTTGGAAAATCTTGAGAGAGAAGTTGAGGATGTCGATTGGGA
EX755157       --> ..........................................GATTGGGA
EV567411       --> .............................................TGGGA
EV526316       --> ................................................GA
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               351    -    401
UN22874        --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FY445904       <-- ..............TTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV540681       <-- ..................................................
EX891300       <-- ..................................................
FY430501       <-- ..................................................
FD976076       <-- ..................................................
EV530826       <-- ..................................................
EW730497       <-- ..................................................
EX893403       <-- ..................................................
EY912787       <-- ..................................................
FD984940       <-- ..................................................
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV536169       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV567580       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EW726317       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EX757493       --> AAGCACTTTCTGCCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EX889724       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EY917239       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD544244       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD570104       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD948564       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD956081       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD964280       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EY924951       --> ..................................................
EY914461       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD970413       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD970679       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EX887057       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV536534       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD980140       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD989116       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACACTC
FD533775       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EX755157       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV567411       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
EV526316       --> AAGCACTTTCTACCTTCGTCATCTCCCTCAGTCCAATCTCTACGACATTC
FD557717       --> ..................................................
FD571482       --> ..................................................
AB447975       --> ..................................................
EV549045       --> ..................................................
ES490567       --> ..................................................

               401    -    451
UN22874        --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv GSK3-1
EV540681       <-- .........................GG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- ..............................ATGAAAGATT-CGGG-AAGA  Raphanus sativus var. oleiformis
FY430501       <-- ................................GAAAGATTTCGGG-AAGA  Raphanus sativus cv GSK3-1
FD976076       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW730497       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- ..................................................  Raphanus sativus var. oleiformis
EY912787       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572495       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944326       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD575310       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV533073       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. maritimus
EV536169       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. landra
EW726317       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv Early Scarlet Globe
EX757493       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus var. oleiformis
EY917239       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> CTGATATGTCTGATGGATACCGGACGG-CCATGAAAGATTTTGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv Early Scarlet Globe
FD948564       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv Early Scarlet Globe
FD956081       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> CTGATATGTCTGATGAATACCGGACGG-CCATGAAAGATTTTGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> -TGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> CTGATATGTCTGATGAATACCGGACGG-CCATGAAAGATTTTGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus sativus var. oleiformis
EV536534       --> CTGATATGTCTGATGAATACCGGACGG-CCATGAAAGATTTTGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> CTGATATGTCTGATGAATACCGGACGGGCTATGAAAGATTTCGGGGAAGA  Raphanus raphanistrum subsp. landra
FD533775       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. maritimus
EX755157       --> CTGATATGTCTGATGAATACCGGACGG-CCATGAAAGATTTTGGG-AAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. landra
EV526316       --> CTGATATGTCTGATGAATACCGGACGG-CTATGAAAGATTTCGGG-AAGA  Raphanus raphanistrum subsp. maritimus
FD557717       --> ..................................................  Raphanus raphanistrum subsp. landra
FD571482       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               451    -    501
UN22874        --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv GSK3-1
EV540681       <-- GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- GATTGGAGA-TCTTGCTGAGGATTTGTTGGGTCTATTGTGTGAAAATCTA  Raphanus sativus var. oleiformis
FY430501       <-- GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv GSK3-1
FD976076       <-- ................................CTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- ......................................TGTGAAAATCTA  Raphanus raphanistrum subsp. maritimus
EW730497       <-- ................................................TA  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- .................................................A  Raphanus sativus var. oleiformis
EY912787       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572495       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD944326       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD575310       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV533073       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. maritimus
EV536169       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. landra
EW726317       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv Early Scarlet Globe
EX757493       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus var. oleiformis
EY917239       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv Early Scarlet Globe
FD948564       --> TACTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv Early Scarlet Globe
FD956081       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGGTCTATTGTGTGAAAATCTA  Raphanus sativus var. oleiformis
EV536534       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> GATTAGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. landra
FD533775       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. maritimus
EX755157       --> GATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. landra
EV526316       --> TATTGGAGAATCTTGCTGAGGATTTGTTGGATCTATTGTGTGAAAATCTA  Raphanus raphanistrum subsp. maritimus
FD557717       --> ..................................................  Raphanus raphanistrum subsp. landra
FD571482       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               501    -    551
UN22874        --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- GGGTTAGAGAAAGGGT..................................
FY445904       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV540681       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX891300       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FY430501       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD976076       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV530826       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EW730497       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX893403       <-- GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EY912787       <-- .....AGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD984940       <-- ....................GAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV572495       <-- ..................................................
FD944326       <-- ..................................................
EV572360       <-- ..................................................
FD575310       <-- ..................................................
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV536169       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV567580       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EW726317       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX757493       --> GGGCTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX889724       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EY917239       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD544244       --> GGATTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAATGTCC
FD570104       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD948564       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD956081       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD964280       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EY924951       --> ..................................................
EY914461       --> GGATTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD970413       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCAT--AACAAAAGGTCC
FD970679       --> GGATTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX887057       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV536534       --> GGATTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD980140       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD989116       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAA......
FD533775       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EX755157       --> GGATTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV567411       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV526316       --> GGGTTAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD557717       --> ....gAGAGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
FD571482       --> .......gGAAAGGGTACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
AB447975       --> ................ACTTGAAGAAAGTGTTTCATGGAACAAAAGGTCC
EV549045       --> ..................................................
ES490567       --> ..................................................

               551    -    601
UN22874        --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV540681       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX891300       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FY430501       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD976076       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV530826       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EW730497       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX893403       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAACTTGTCCTAAGCCAGAGA
EY912787       <-- AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGTGA
FD984940       <-- AA--CTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV572495       <-- ......TGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD944326       <-- .........................TATCCAGCTTGTCCTAAGCCAGAGA
EV572360       <-- .........................................AGCCAGAGA
FD575310       <-- ..........................................GCCAGAGA
EV544602       <-- ..................................................
FD966781       <-- ..................................................
FD574181       <-- ..................................................
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> AACCTTTGGGACTAAGGTGAGCAATTATCTAGCTTGTCCTAAGCCAGAGA
EV536169       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV567580       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EW726317       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX757493       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX889724       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAACTTGTCCTAAGCCAGAGA
EY917239       --> AACCTTTGGGACTAAG-TGAGCAATTATCCAGCTTGTCCTAAGCCAGTGA
FD544244       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD570104       --> AACCTTTGGGA.......................................
FD948564       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD956081       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD964280       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EY924951       --> ..................................................
EY914461       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD970413       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD970679       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX887057       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV536534       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD980140       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD989116       --> ..................................................
FD533775       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EX755157       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV567411       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTATCCTAAGCCAGAGA
EV526316       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD557717       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
FD571482       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
AB447975       --> AACCTTTGGGACTAAGGTGAGCAATTATCCAGCTTGTCCTAAGCCAGAGA
EV549045       --> ..................................................
ES490567       --> ..................................................

               601    -    651
UN22874        --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv GSK3-1
EV540681       <-- TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus var. oleiformis
FY430501       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv GSK3-1
FD976076       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGAATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- TG--AAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. maritimus
EW730497       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus var. oleiformis
EY912787       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
EV572495       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
FD944326       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
FD575310       <-- TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- .GATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGAATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ...TCAAAGGTTTTAGGGCCCACACTGATGCAGGAAGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ..........................................TCTTGTTG  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV533073       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> TGATCAAAGGTCTAAGGGCCCACAC-GATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. maritimus
EV536169       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAG-AGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
EW726317       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAG-AGGCATCATCTTGTTG  Raphanus sativus cv Early Scarlet Globe
EX757493       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus var. oleiformis
EY917239       --> TGATC.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948564       --> TGATCAAAGGTCTAAGGGCCCACACTGAT.....................  Raphanus sativus cv Early Scarlet Globe
FD956081       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAG-AGGCATCATTTTGTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> TGATCAAAGGTCTAAGGGCCCACACTGAT.....................  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAcga...............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAG-AAGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCACGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> TGATCAAAGGT.......................................  Raphanus sativus var. oleiformis
EV536534       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGAATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> ..................................................  Raphanus raphanistrum subsp. landra
FD533775       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. maritimus
EX755157       --> TGATCAAAGGTCTTAGGGCCCACACTGATGCAGGGGGCATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
EV526316       --> TGA--AAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. maritimus
FD557717       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus raphanistrum subsp. landra
FD571482       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv Early Scarlet Globe
AB447975       --> TGATCAAAGGTCTAAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTG  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ......AAGGTCTAAGGGCCCACACTGATGCAGGAGGAATCATCTTGTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               651    -    701
UN22874        --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV540681       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EX891300       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FY430501       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD976076       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV530826       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EW730497       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EX893403       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EY912787       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD984940       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV572495       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD944326       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV572360       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD575310       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV544602       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD966781       <-- TTTCAAGATGACAAGGTTAGTGGTTTCCAGCTTTTTAAAGATGGTGACTG
FD574181       <-- TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EX761070       <-- ..................................................
EX776940       <-- ..................................................
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV536169       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV567580       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EW726317       --> TTTCA-GATGACAAGGTTAGTGGTCTCCAGCTTCTTAA-GATGG......
EX757493       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EX889724       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EY917239       --> ..................................................
FD544244       --> TT-CAAGATGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD970679       --> TTTCAAGATGACAAAGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EX887057       --> ..................................................
EV536534       --> TTTCAAGATGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD980140       --> TTTC..............................................
FD989116       --> ..................................................
FD533775       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACCG
EX755157       --> TTTCAAGATGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV567411       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV526316       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD557717       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
FD571482       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
AB447975       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
EV549045       --> TTTCAAGATGACAAGGTTAGTGGTCTCCAGCTTCTTAAAGATGGTGACTG
ES490567       --> ...................................TAAAGATGGTGACTG

               701    -    751
UN22874        --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV540681       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX891300       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FY430501       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTTAC
FD976076       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV530826       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EW730497       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX893403       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EY912787       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD984940       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV572495       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD944326       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV572360       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD575310       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV544602       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD966781       <-- G-ATTGATGTTCCTCCACTCAACCACTTTATTGTCATCAATCTTGGTGAC
FD574181       <-- G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX761070       <-- ..ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX776940       <-- .........................cttTATTGTCATCAATTTTGGTGAC
EV533073       <-- ..................................................
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGT................
EV536169       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV567580       --> GGATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EW726317       --> ..................................................
EX757493       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX889724       --> G-ATTGATGTTCCTCCACTCA-CCACTCTATTGTCATCAATCTTGGTGAC
EY917239       --> ..................................................
FD544244       --> G-ATTGATGT........................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> G-ATTGATGTTC-T-CACTCAACCACTCTATg..................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> G-ATTGATGTTCCTCCACTCA-CCACTCTAT-GTCATCAATCT-GGTGAC
FD970679       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EX887057       --> ..................................................
EV536534       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGTTGAC
EX755157       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV567411       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV526316       --> GGATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD557717       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
FD571482       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
AB447975       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
EV549045       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC
ES490567       --> G-ATTGATGTTCCTCCACTCAACCACTCTATTGTCATCAATCTTGGTGAC

               751    -    801
UN22874        --> CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv GSK3-1
EV540681       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCCCCGTGT  Raphanus sativus var. oleiformis
FY430501       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv GSK3-1
FD976076       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. maritimus
EW730497       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCCCCGTGT  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus var. oleiformis
EY912787       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. landra
EV572495       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. landra
FD944326       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. landra
FD575310       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- CAACTTGAGGTTATAACCAACGGCAGGTGCAAGAGTGTGATGCACCGTGT  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCCCCGTGT  Raphanus raphanistrum subsp. landra
EV533073       <-- ................CCAACGGCAGGTACAAGAGTGTGATGCCCCGTGT  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV529289       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536169       --> CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> CAACTTG...........................................  Raphanus raphanistrum subsp. landra
EW726317       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX757493       --> CAACTTGAGtgata....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> CAACTTGAGGT-ATAACC................................  Raphanus sativus var. oleiformis
EY917239       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948564       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956081       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> -AACTTGAGtgataac..................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> CAACTTGAGGT.......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> ..................................................  Raphanus sativus var. oleiformis
EV536534       --> CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> ..................................................  Raphanus raphanistrum subsp. landra
FD533775       --> CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. maritimus
EX755157       --> CAACTTGAGGTGATAACCAACGGCAGGTACATGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. landra
EV526316       --> CAACTTGAGGTTATAACCAACGG...........................  Raphanus raphanistrum subsp. maritimus
FD557717       --> CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. landra
FD571482       --> CAACTTGAGGTTATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv Early Scarlet Globe
AB447975       --> CAACTTGAGGTTATAACCAACGGCAGGT......................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> CAACTTGAGGTGATAACCAACGGCAGGTACAAGAGTGTGATGCACCGTGT  Raphanus sativus cv Zaosheng60tian

               801    -    851
UN22874        --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV540681       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EX891300       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FY430501       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD976076       <-- GGTGACTCAGCAAGAAGGAAACGGAATGTCCATTGCATCTTTCTACAACC
EV530826       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EW730497       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EX893403       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EY912787       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD984940       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV572495       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD944326       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV572360       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD575310       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV544602       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD966781       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTTTACAACC
FD574181       <-- GGTGGCTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTTTACAACC
EX761070       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EX776940       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTTTACAACC
EV533073       <-- GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD952033       <-- ..................................................
EY920537       <-- ..................................................
EV529289       --> ..................................................
EV536169       --> GGTGACT...........................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> GGTGACTCAGaaa.....................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EX755157       --> GGTGACTCAGAAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV567411       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
EV526316       --> ..................................................
FD557717       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
FD571482       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
AB447975       --> ..................................................
EV549045       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATCTTTCTACAACC
ES490567       --> GGTGACTCAGCAAGAAGGAAACAGAATGTCCATTGCATC...........

               851    -    901
UN22874        --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EV540681       <-- CGGGAAGCGATGCTGCGATCTCTCCAGCTTCATCGCTTGTATGCAAAGAA
EX891300       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FY430501       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD976076       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EV530826       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCCGCAAAGAA
EW730497       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EX893403       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EY912787       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD984940       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAG
EV572495       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCGAAGAA
FD944326       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAATGAA
EV572360       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD575310       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAATGAA
EV544602       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD966781       <-- CGGGAAGGGATGCTGCGATCTTTCCAGCTTCATCGCTTGTTTGCAAAGAA
FD574181       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAATGAA
EX761070       <-- CGGGAAGCGATGCTGCGATCTCTCCAGCTACATCGCTTGTCTGCAAAGAA
EX776940       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTTTGCAAAGAA
EV533073       <-- CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD952033       <-- ..............GAGATCTTTCCAGCTTCATCGCTTGTTTGCAAAGAA
EY920537       <-- ..................................................
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EX755157       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EV567411       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
EV526316       --> ..................................................
FD557717       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
FD571482       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAATGAA
AB447975       --> ..................................................
EV549045       --> CGGGAAGCGATGCTGAGATCTCTCCAGCTTCATCGCTTGTCTGCAAAGAA
ES490567       --> ..................................................

               901    -    951
UN22874        --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV540681       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EX891300       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FY430501       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FD976076       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV530826       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EW730497       <-- ACCGAGTACCCGAGTTTTGTTCTTGATGACTACATGAAGCTCTATGCTGG
EX893403       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EY912787       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
FD984940       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV572495       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FD944326       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV572360       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
FD575310       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV544602       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FD966781       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
FD574181       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
EX761070       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EX776940       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
EV533073       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FD952033       <-- ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTTTATGCTGG
EY920537       <-- ..................................................
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EX755157       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV567411       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
EV526316       --> ..................................................
FD557717       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
FD571482       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
AB447975       --> ..................................................
EV549045       --> ACCGAGTACCCGAGTTTTGTTTTTGATGACTACATGAAGCTCTATGCTGG
ES490567       --> ..................................................

               951    -   1001
UN22874        --> GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EV540681       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EX891300       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FY430501       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD976076       <-- GG-TCAAGTTTCAGTCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EV530826       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EW730497       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EX893403       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EY912787       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD984940       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EV572495       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD944326       <-- GG-TCAAGTTTCAGCCTAAGGGGCCACGGTTCGAGGCAATGAAGAATGCA
EV572360       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD575310       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EV544602       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD966781       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD574181       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAGTGAAGAATGCA
EX761070       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EX776940       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EV533073       <-- GG-TCAAGTTTCAGCCTAAGGAGCCCCGGTTCGAGGCAATGAAGAATGCA
FD952033       <-- GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
EY920537       <-- ..................................................
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> GG-TCAAGTTTCAGCCTAAG-AGCCACGGTTCGAGGCAATGAAGAATGCA
EX755157       --> GGGTCAAGTTTCAGCCTAAGGAGCCACGGTTCTAGGCAATGAAGAATGCA
EV567411       --> GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATG..
EV526316       --> ..................................................
FD557717       --> GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
FD571482       --> GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
AB447975       --> ..................................................
EV549045       --> GG-TCAAGTTTCAGCCTAAGGAGCCACGGTTCGAGGCAATGAAGAATGCA
ES490567       --> ..................................................

               1001   -   1051
UN22874        --> AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- AATGCAGTTACAGAATTGAACCCAACAGCTGCCGTAGAGACTTTCTAAAA
EV540681       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EX891300       <-- AATGCAGTTACAGAATTGAACCCAACAGCTGCCGTAGAGACTTTCTAAAA
FY430501       <-- AATGCAGTTACAGAATTGAACCCAACAGCTGCCGTAGAGACTTTCTAAAA
FD976076       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EV530826       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EW730497       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EX893403       <-- AATGCAGTTACAGAATTTAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EY912787       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
FD984940       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EV572495       <-- AATGCAGTTACAGAATTGA-CCCAACAGCAGCCGTAGAGACTTTCTAAAA
FD944326       <-- AATGCAGTTACAGAATTGAACCCAACAGCGGCCGTAGAGACTTTCTAAAA
EV572360       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
FD575310       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EV544602       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
FD966781       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
FD574181       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EX761070       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EX776940       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTTTAAAA
EV533073       <-- AATGCAGTTACAGAATTGAACCCAACAGCCGCCGTAGAGACTTTCTAAAA
FD952033       <-- AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTTTAAAA
EY920537       <-- ..................................................
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> A-TGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAA-
EX755157       --> AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAG-TTTTCTAAAA
FD571482       --> AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
AB447975       --> ..................................................
EV549045       --> AATGCAGTTACAGAATTGAACCCAACAGCAGCCGTAGAGACTTTCTAAAA
ES490567       --> ..................................................

               1051   -   1101
UN22874        --> ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- ACAAAGTTGAGTTTCAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv GSK3-1
EV540681       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus var. oleiformis
FY430501       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv GSK3-1
FD976076       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGGGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. maritimus
EW730497       <-- ACAAAGTTGAGTTTAAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus sativus var. oleiformis
EY912787       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ACAAAGTTGAGTTTGAGCGAAAaaaaa.......................  Raphanus raphanistrum subsp. landra
EV572495       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. landra
FD944326       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. landra
FD575310       <-- ACAAAGTTGATTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGGGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAA.............  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. landra
EV533073       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGCGTGTTGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- ...........TTTGAGCGAAAGCAAAGAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. landra
EV529289       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536169       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> ..................................................  Raphanus raphanistrum subsp. landra
EW726317       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX757493       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> ..................................................  Raphanus sativus var. oleiformis
EY917239       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948564       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956081       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> ..................................................  Raphanus sativus var. oleiformis
EV536534       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> ..................................................  Raphanus raphanistrum subsp. landra
FD533775       --> GCAAAGTTGAGTTTGAGCGAAAGCAA-GAAACAAAAcgtgtg........  Raphanus raphanistrum subsp. maritimus
EX755157       --> -CAAAGTTGAGTTTGAGAGAA-GCAA-GAA-CAAAA-TGTGTGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526316       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD557717       --> ACAAAGTTGAGTTTGAGCGAAAGCAAATAAACAAAAACGTGTGTTGTGGT  Raphanus raphanistrum subsp. landra
FD571482       --> ACAAAGTTGATTTTGAGCGAAAGCAAAGAAACAAAAATGTGTGTTGTGGT  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> ACAAAGTTGAGTTTGAGCGAAAGCAAAGAAACAAAAATGTGGGTTGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               1101   -   1151
UN22874        --> GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
FY445904       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv GSK3-1
EV540681       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX891300       <-- GTGTGCGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus var. oleiformis
FY430501       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv GSK3-1
FD976076       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV530826       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. maritimus
EW730497       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Early Scarlet Globe
EX893403       <-- GTGTGTG--TATACTTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus var. oleiformis
EY912787       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD984940       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV572495       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. landra
FD944326       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Early Scarlet Globe
EV572360       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. landra
FD575310       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Early Scarlet Globe
EV544602       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966781       <-- GTG----TGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574181       <-- GTGTGTG--TATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Early Scarlet Globe
EX761070       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX776940       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. landra
EV533073       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. maritimus
FD952033       <-- ATGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Rat-Tail Radish #3870
EY920537       <-- GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. landra
EV529289       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV536169       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567580       --> ..................................................  Raphanus raphanistrum subsp. landra
EW726317       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX757493       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889724       --> ..................................................  Raphanus sativus var. oleiformis
EY917239       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544244       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD570104       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948564       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956081       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD964280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY924951       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914461       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD970413       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970679       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX887057       --> ..................................................  Raphanus sativus var. oleiformis
EV536534       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980140       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989116       --> ..................................................  Raphanus raphanistrum subsp. landra
FD533775       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX755157       --> GTGTGTatacgtcataagtatgt...........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567411       --> ..................................................  Raphanus raphanistrum subsp. landra
EV526316       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD557717       --> GTGTGTGTGTATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. landra
FD571482       --> GTGTGTGT--ATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus sativus cv Early Scarlet Globe
AB447975       --> ..................................................  Raphanus sativus cv Sakurajima Daikon var. niger
EV549045       --> GTGTGTGT--ATACGTCAATAAGTTACAAGACTGATATTATTGTTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
ES490567       --> ..................................................  Raphanus sativus cv Zaosheng60tian

               1151   -   1201
UN22874        --> AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTC...................
EV540681       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EX891300       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAATGTG
FY430501       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAATGTG
FD976076       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EV530826       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EW730497       <-- AATTAAGATGTCTGTTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EX893403       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EY912787       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
FD984940       <-- ..................................................
EV572495       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
FD944326       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAGAGTGTG
EV572360       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGcc...................
FD575310       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EV544602       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
FD966781       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGac...................
FD574181       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EX761070       <-- ..................................................
EX776940       <-- AATTAAGATGTTTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EV533073       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
FD952033       <-- AATTAAGATGTTTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAATGTG
EY920537       <-- AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> ..................................................
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
FD571482       --> AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
AB447975       --> ..................................................
EV549045       --> AATTAAGATGTCTGGTGGTTAATTGTTGGTCAATGGTGTTTTAAAGTGTG
ES490567       --> ..................................................

               1201   -   1251
UN22874        --> GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
AB447921       <-- ..................................................
FY445904       <-- ..................................................
EV540681       <-- GTGTGTTTATTTATGTTTATTGAAG.........................
EX891300       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FY430501       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FD976076       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EV530826       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EW730497       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EX893403       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EY912787       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAAT..............
FD984940       <-- ..................................................
EV572495       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FD944326       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EV572360       <-- ..................................................
FD575310       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EV544602       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FD966781       <-- ..................................................
FD574181       <-- GTGTGTTTATTTATGTTTATTGAAG.........................
EX761070       <-- ..................................................
EX776940       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EV533073       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FD952033       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAAT..............
EY920537       <-- GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
EV529289       --> ..................................................
EV536169       --> ..................................................
EV567580       --> ..................................................
EW726317       --> ..................................................
EX757493       --> ..................................................
EX889724       --> ..................................................
EY917239       --> ..................................................
FD544244       --> ..................................................
FD570104       --> ..................................................
FD948564       --> ..................................................
FD956081       --> ..................................................
FD964280       --> ..................................................
EY924951       --> ..................................................
EY914461       --> ..................................................
FD970413       --> ..................................................
FD970679       --> ..................................................
EX887057       --> ..................................................
EV536534       --> ..................................................
FD980140       --> ..................................................
FD989116       --> ..................................................
FD533775       --> ..................................................
EX755157       --> ..................................................
EV567411       --> ..................................................
EV526316       --> ..................................................
FD557717       --> GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
FD571482       --> GTGT..............................................
AB447975       --> ..................................................
EV549045       --> GTGTGTTTATTTATGTTTATTGAAGATGATAATAATAATGAATAATATGA
ES490567       --> ..................................................

               1251   -   1301
UN22874        --> TAACTGTTCTAAGAC
                   ~~~~~~~~~~~~~~~
AB447921       <-- ...............
FY445904       <-- ...............
EV540681       <-- ...............
EX891300       <-- TAACTGTTCT.....
FY430501       <-- TAACTGTTCTAg...
FD976076       <-- TAACTGTTCT.....
EV530826       <-- TAACTGTTCTAAGgg
EW730497       <-- TAACTGTTCTAAG..
EX893403       <-- TAACTGTTCc.....
EY912787       <-- ...............
FD984940       <-- ...............
EV572495       <-- TAACTGTTCTAAGAC
FD944326       <-- TAACTGTTCTAAGg.
EV572360       <-- ...............
FD575310       <-- TAACTGTTCT.....
EV544602       <-- TAACTGTTCT.....
FD966781       <-- ...............
FD574181       <-- ...............
EX761070       <-- ...............
EX776940       <-- TAACTGTTCTAgg..
EV533073       <-- TAACTGTTCTAAG..
FD952033       <-- ...............
EY920537       <-- TAACTGTTCT.....
EV529289       --> ...............
EV536169       --> ...............
EV567580       --> ...............
EW726317       --> ...............
EX757493       --> ...............
EX889724       --> ...............
EY917239       --> ...............
FD544244       --> ...............
FD570104       --> ...............
FD948564       --> ...............
FD956081       --> ...............
FD964280       --> ...............
EY924951       --> ...............
EY914461       --> ...............
FD970413       --> ...............
FD970679       --> ...............
EX887057       --> ...............
EV536534       --> ...............
FD980140       --> ...............
FD989116       --> ...............
FD533775       --> ...............
EX755157       --> ...............
EV567411       --> ...............
EV526316       --> ...............
FD557717       --> TAACTGTTCTAg...
FD571482       --> ...............
AB447975       --> ...............
EV549045       --> TAACTGTTCT.....
ES490567       --> ...............