1      -     51
UN22911        --> GGACAAAGCACCCGTTTTACTCATGTAAGAAAAACGTGGAATTTAACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- .........................ctAGAAAAACGTGGAATTTAACACT
EY912852       <-- ..................................................
EY931084       <-- ..................................................
EW734188       <-- ..................................................
EX773232       <-- ..................................................
EY908690       <-- ..................................................
EY916471       <-- ..................................................
FD541316       <-- ..................................................
EY913060       <-- ..................................................
EX777054       --> GGACAAAGCACCCGTTTTACTCATGTAAGAAAAACGTGGAATTTAACACT
FD536652       --> .......actcatgtcagaaaataGTAAGAAAAACGTGGAATTTAACACT
EX750745       --> .........................ctAGAAAAACGTGGAATTTAACACT
FD573468       --> ............................................AACACT
EY909363       --> ..................................................
EW738643       --> ..................................................
EY909191       --> ..................................................
EY912148       --> ..................................................
FD537622       --> ..................................................

               51     -    101
UN22911        --> GACACTGGAAAATTATAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- GACACTGGAAAATTATAGGATT-GTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus raphanistrum subsp. maritimus
EY912852       <-- ..............ATAGGATT-GTTTA-TTAAACCAAA-GTCAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- ...............TAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus sativus var. oleiformis
EW734188       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908690       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> GACACTGGAAAATTATAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus raphanistrum subsp. landra
FD536652       --> GACACTGGAAACTTATAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> GACACTGGAAAATTATAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus raphanistrum subsp. maritimus
FD573468       --> GACACTGGAAA-TTATAGGATTTGTTTCTTTAAACCAAAAGTCAGAGAAA  Raphanus sativus cv Early Scarlet Globe
EY909363       --> ggCACTGGAAAATTATAGGATTTGTTTATTTAAACCAAAAGTCAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> .....cGGAAAATTATAGGATTTGTTTATTTAAACCAAAAGTCAGAGAAA  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> ..............ATAGGATTTGTTTATTTAAACCAAAAGTCAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> ...............................AAACCAAAAGTCAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> ..........................................CAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN22911        --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- TAGATAGATTATAGATTCCGGATCTGGATTACAAAAA-CAAAACTAAAGC
EY912852       <-- TAGATAGATTATAGAT-CCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EY931084       <-- TAGATAGATTATAGATTCCGGATTTGGATTACAAAA--CAAAACTAAAGC
EW734188       <-- .AGATAGATTATAGATTC-GGATTTGGATTACAAAA--CAAAACTAAAGC
EX773232       <-- .AGATAGATTATAGAT-CCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EY908690       <-- .....................ATTTGGATTACAAAAA-CAAAACTAAAGC
EY916471       <-- ..................................................
FD541316       <-- ..................................................
EY913060       <-- ..................................................
EX777054       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
FD536652       --> TAGATAGATTATAAATTCCGGATTTGGATTACAAAAAACAAAACTAAAGC
EX750745       --> TAGATAGATTATAGATTCCGGATCTGGATTACAAAAA-CAAAACTAAAGC
FD573468       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EY909363       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EW738643       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EY909191       --> TAAATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
EY912148       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC
FD537622       --> TAGATAGATTATAGATTCCGGATTTGGATTACAAAAA-CAAAACTAAAGC

               151    -    201
UN22911        --> CAAAACTGAAAACTGTCTTTCAATTGCTTAACGATAAGCACAGCTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- CAAAACTGAAAACTGTCTTTCAGTTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. maritimus
EY912852       <-- CAAAACTGAAAACTGTCTTTCAATTGCTTAAGGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- CAAAACTGAAAA-TGTCTTTCAATTGCTTAACGATAAGAACAGCTCTTTC  Raphanus sativus var. oleiformis
EW734188       <-- CAAAACTGAAAACTGTCTTTCAATTGCTTAAAGATAAGCACAGCTCTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- CAAAACTGAAAACTGTCTTTCAGTTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. landra
EY908690       <-- CAAAACTGAAAACTGTCTTTCAATTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- .............TGTCTTTCAATTGCTTAAGGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> CAAAACTGAAAACTGTCTTTCAGTTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. landra
FD536652       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> CAAAACTGAAAACTGTCTTTCAGTTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. maritimus
FD573468       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAACGATAAGCACAGCTCTTTC  Raphanus sativus cv Early Scarlet Globe
EY909363       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAAGGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAAAGATAAGCACAGCTCTTTC  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAAGGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAAGGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> CAAAACTGAAAACTGTCTTTCAATTGCTTAACGATAAGCACAGCTCTTTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN22911        --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY912852       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY931084       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCAGCACCA
EW734188       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EX773232       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY908690       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY916471       <-- AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
FD541316       <-- ...............CAGATGGAGCTGCAGCGCTGTAACCAC-TGCACCA
EY913060       <-- ..............................................ACCA
EX777054       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
FD536652       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EX750745       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
FD573468       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY909363       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EW738643       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY909191       --> AGGGTAAACCGGAACCAAATGGAGCTGCAGCGCTGTAACCACCTGCACCA
EY912148       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA
FD537622       --> AGGGTAAACCGGAACCAGATGGAGCTGCAGCGCTGTAACCACCTGCACCA

               251    -    301
UN22911        --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY912852       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY931084       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAGGGTTGGTAATC
EW734188       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EX773232       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY908690       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY916471       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
FD541316       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY913060       <-- CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EX777054       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
FD536652       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EX750745       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
FD573468       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAGGGCTGGTAATC
EY909363       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EW738643       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
EY909191       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAAAAGGCTGGTAATC
EY912148       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC
FD537622       --> CGGCCAAATCCAGGCCTACCACCACTTCCTTGGAAAGAAGGCTGGTAATC

               301    -    351
UN22911        --> AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- AGCAGGAGCTCCACCCTTTTCACCTTCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. maritimus
EY912852       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus sativus var. oleiformis
EW734188       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- AGCGGGAGCTCCACCCTTTTCACCTTCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. landra
EY908690       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> AGCGGGAGCTCCACCCTTTTCACCTTCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. landra
FD536652       --> AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> AGCAGGAGCTCCACCCTTTTCACCTTCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. maritimus
FD573468       --> AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus sativus cv Early Scarlet Globe
EY909363       --> AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> AGCAGGAGCTCCACCCTTTTCACCTCCAGCATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> AGCAGGAGCTCCACCCTTTTCACCTCCAACATCACCACCACGTGGCCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN22911        --> CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- CACGGTAACCATCACGGTCACCATATCTGGGACGGTCTCCCTCAAAGCGA  Raphanus raphanistrum subsp. maritimus
EY912852       <-- CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- CACGGTACCCATCACGGTCACCATATCTGGGACGGTCTCCCTCAAAGCGA  Raphanus sativus var. oleiformis
EW734188       <-- CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- CACGGTAACCATCACGGTCACCATATCTGGGACGGTCTCCCTCAAAGCGG  Raphanus raphanistrum subsp. landra
EY908690       <-- CACGGTACCCATCACGTTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- CACGGTACCCATCACGTTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> CACGGTAACCATCACGGTCACCATATCTGGGACGGTCTCCCTCAAAGCGG  Raphanus raphanistrum subsp. landra
FD536652       --> CACGGTACCCATCACGGTCACCGTATCTGGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> CACGGTAACCATCACGGTCACCATATCTGGGACGGTCTCCCTCAAAGCGA  Raphanus raphanistrum subsp. maritimus
FD573468       --> CACGGTACCCATCACGTTCACCATATCTGGGACGGTCTCCCTCAAAGCGA  Raphanus sativus cv Early Scarlet Globe
EY909363       --> CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> CACGGTAGCCATCACGGTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> CACGGTACCCATCACGTTCACCATATCTTGGACGGTCTCCCTCAAAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN22911        --> GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- GGTGGCCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. maritimus
EY912852       <-- GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus sativus var. oleiformis
EW734188       <-- GGTGGTCCTCTTGGTCGATCACTAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. landra
EY908690       <-- GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. landra
FD536652       --> GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> GGTGGCCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. maritimus
FD573468       --> GGTGGGCCTCTTGGGCGATCACCAGGTGGGCCACCGAAAGGACGACCAAT  Raphanus sativus cv Early Scarlet Globe
EY909363       --> GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> GGTGGTCCTCTTGGTCGATCACTAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> GGTGGTCCTCTTGGTCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> GGTGGTCCTCTTGGGCGATCACCAGGTGGGCCACCAAAAGGACGGCCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN22911        --> GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. maritimus
EY912852       <-- GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus sativus var. oleiformis
EW734188       <-- GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- GGGCTTAGCAGACTTCTTCAAAGTCGCAGGTACAACATCTGACGGAAGGT  Raphanus raphanistrum subsp. landra
EY908690       <-- GGGCTTAGCAGACTTCTTCAATGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- GGGCTTAGCAGACTTCTTCAATGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- GGGCTTAGAAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> GGGCTTAGCAGACTTCTTCAAAGTCGCAGGTACAACATCTGACGGAAGGT  Raphanus raphanistrum subsp. landra
FD536652       --> GGGCTTAGCAAACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> GGGCTTAGCAGACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. maritimus
FD573468       --> GGGCTTAGCAAACTTCTTCAATGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus sativus cv Early Scarlet Globe
EY909363       --> GGGCTTAGAAGACTTCTTCAAGGTCGCAGGAACAACATCAAACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> GGGCTTAGCAAACTTCTTCAAGGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> GGGCTTAGCAAACTTCTTCAAGGTCGCAGGAACAACAT............  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> GGGCTTAGCAAACTTCTTCAAGGTCGCAGGAACAACATCAAACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> GGGCTTAGCAAACTTCTTCAATGTCGCAGGAACAACATCAGACGGAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN22911        --> TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCATAGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. maritimus
EY912852       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCATTGGTCAAAAACCAATAA  Raphanus sativus var. oleiformis
EW734188       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- TAAGATAAGTTCTCAAGAACTCAATGCCTTCATTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. landra
EY908690       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> TAAGATAAGTTCTCAAGAACTCAATGCCTTCATTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. landra
FD536652       --> TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAGTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> TAAGATAAGTTCTCAAAAACTCAATGCCTTCATAGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. maritimus
FD573468       --> TAAGATAGGTTCTCAAAAACTCAATGCCTTCATTGGTCAAAAACCAATAA  Raphanus sativus cv Early Scarlet Globe
EY909363       --> TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> TAAAATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> TAAAATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> TAAGATAAGTTCTCAAAAACTCAATGCCTTCGTTGGTCAAAAACCAATAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN22911        --> TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- TAATGCATCCAAGCGAATGTCTCCCTAACGTACTCCTTGGATTTGAAACT  Raphanus raphanistrum subsp. maritimus
EY912852       <-- TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- TAGTGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus sativus var. oleiformis
EW734188       <-- TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. landra
EY908690       <-- TAGTGCATCCAAGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- TAGTGCATCCAAGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. landra
FD536652       --> TAGTGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> TAATGCATCCAAGCGAATGTCTCCCTAACGTACTCCTTGGATTTGAAACT  Raphanus raphanistrum subsp. maritimus
FD573468       --> TAATGCATCCAGGCAAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus sativus cv Early Scarlet Globe
EY909363       --> TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> TAATGCATCCATGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> TAGTGCATCCAAGCGAACGTCTCCCTAACGTACTCCTTGGACTTGAAACT  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN22911        --> CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- CTGCATGAGCTTGATCACTTGCAAGTTTGGCACTGACTCGATCAACGGAT  Raphanus raphanistrum subsp. maritimus
EY912852       <-- CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- CTGCATGAGCTTGATCACTTGCAAGTTTGGTACTGACTCAATCAACGGAT  Raphanus sativus var. oleiformis
EW734188       <-- CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- CTGCATGAGCTTAATCACTTGCAAGTTTGGTACTGACTCGATCAACGGAT  Raphanus raphanistrum subsp. landra
EY908690       <-- CTGCATGAGCTTGATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- CTGCATGAGCTTAATCACTTGCAAGTTCGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- CTGCATGAGCTTGATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> CTGCATGAGCTTAATCACTTGCAAGTTTGGTACTGACTCGATCAACGGAT  Raphanus raphanistrum subsp. landra
FD536652       --> CTGCATGAGCTTGATCACTTGCAAGTTTGGAACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> CTGCATGAGCTTGATCACTTGCAAGTTTGGCACTGACTCGATCAACGGAT  Raphanus raphanistrum subsp. maritimus
FD573468       --> CTGCATGAGCTTAATCACTTGCAAGTTCGGCACTGACTCAATCAACGGAT  Raphanus sativus cv Early Scarlet Globe
EY909363       --> CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> CTGCATGAGCTTAATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> CTGCATGAGCTTAATCACTTGCAAGTTCGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> CTGCATGAGCTTGATCACTTGCAAGTTTGGCACTGACTCAATCAACGGAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN22911        --> GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- GCTTTGCGAGGTTGAAGTCCTCCTTGGCGAACAATACTCCTT-CTTTGAA
EY912852       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY931084       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EW734188       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EX773232       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY908690       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY916471       <-- GCTTTGCGAGGTTGAAATCCTTCCTCGCAAACAACACTCCTT-CTTTGAA
FD541316       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY913060       <-- GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EX777054       --> GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
FD536652       --> GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTTTCTTTGAA
EX750745       --> GCTTTGCGAGGTTGAAGTCCTCCTTGGCGAACAATACTCCTT-CTTTGAA
FD573468       --> GCTTTGCGAGGTTGAAGTCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY909363       --> GCTTTGCGAGGTTGAAATC...............................
EW738643       --> GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA
EY909191       --> ..................................................
EY912148       --> GCTTTGCGAGGTTGAAATCCTTCCTCGCAAACAACACTCCT.........
FD537622       --> GCTTTGCGAGGTTGAAATCCTTCTTCGCAAACAATACTCCTT-CTTTGAA

               701    -    751
UN22911        --> GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EY912852       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EY931084       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EW734188       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EX773232       <-- GAGGTACTTGCAGATCTC................................
EY908690       <-- AAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EY916471       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
FD541316       <-- AAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EY913060       <-- GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EX777054       --> GAGGTACTTGCAGATCTCTCTGAGGTTGGTCTCTGAGATAATCATCGTCT
FD536652       --> GA................................................
EX750745       --> GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
FD573468       --> GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGA..............
EY909363       --> ..................................................
EW738643       --> GAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT
EY909191       --> ..................................................
EY912148       --> ..................................................
FD537622       --> AAGGTACTTGCAGATCTCTCTGCGGTTGGTCTCTGAGATAATCATCGTCT

               751    -    801
UN22911        --> TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- TGTTGGTAGGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTGTTT  Raphanus raphanistrum subsp. maritimus
EY912852       <-- TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY931084       <-- TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus sativus var. oleiformis
EW734188       <-- TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus sativus cv Rat-Tail Radish #3870
EX773232       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY908690       <-- TGTCGGTAGGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916471       <-- TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541316       <-- TGTCGGTAGGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913060       <-- TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX777054       --> TGTTGGTA-GAGCTTTCGCTGCAACGAGGA-CAGAGCTTCTTTGTTGTTT  Raphanus raphanistrum subsp. landra
FD536652       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX750745       --> TGTTGGTAGGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTGTTT  Raphanus raphanistrum subsp. maritimus
FD573468       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY909363       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW738643       --> TGTTGGTAAGAGCTTTCGCTGCAACGAGGAACAGAGCTTCTTTGTTTTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY909191       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY912148       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537622       --> T.................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN22911        --> TTTTTTTGGTCAAAAGAGGCA..
                   ~~~~~~~~~~~~~~~~~~~~~~~
EX746304       <-- TTTggtctcc.............
EY912852       <-- TTggtccc...............
EY931084       <-- TTTTTTTGGTCAAAAGAGGCAcc
EW734188       <-- TTggtcc................
EX773232       <-- .......................
EY908690       <-- TTTTTTTGGTCcc..........
EY916471       <-- TTggtccc...............
FD541316       <-- TTTTTTTGGTCcc..........
EY913060       <-- TTgg...................
EX777054       --> TTTggtcc...............
FD536652       --> .......................
EX750745       --> TTTggtctcc.............
FD573468       --> .......................
EY909363       --> .......................
EW738643       --> Tggtcc.................
EY909191       --> .......................
EY912148       --> .......................
FD537622       --> .......................