RadishBase

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Alignment for radish unigene UN22940

               1      -     51
UN22940        --> CCACTCCTTTCAATCTTCTTTCCTCTACCATACAAAA-TAATAAATGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- CCACTCCTTTCAATCTTCTTTCCTCTACCATACAAAA-TAATAAATGCCT
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> CCACTCCTTTCAATCTTCTTTCCTCTACCATACAAAA-TAATAAATGCCT
FD937077       --> ..........CAATCTTCTTTCCTCTACCATACAAAA-TAATAAATGCCT
EV571647       --> .........................cACCATACAAAA-TCATAAATGCCT
EY926081       --> ..........................ACCATACAAAAATAATAAATGCCT
EV529921       --> ..........................gCCATACAAAA-TAATAAATGCCT
EX767253       --> .......................................AATAAATTCCT
EY937239       --> .......................................AATAAATGCCT
EX768848       --> .......................................cATAAATGCCT

               51     -    101
UN22940        --> TACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- TACGTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> TACGTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
FD937077       --> TACGTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EV571647       --> TACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EY926081       --> CACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAGAAGACGCACAC
EV529921       --> TACGTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EX767253       --> TACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EY937239       --> TACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC
EX768848       --> TACTTAAAAAGAGTTTAAACAAAGAAAAACAATACGAAAAAGACGCACAC

               101    -    151
UN22940        --> CAATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- CAATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> CAATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
FD937077       --> CAATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAAAAAAGA
EV571647       --> CGATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
EY926081       --> CAATGGAAAACCAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
EV529921       --> CAATGGAAAACGATGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
EX767253       --> CAATGGAAAACGAAGGAGCATTTCCATGTGACA-CACATAGCAAAAAAGA
EY937239       --> CAATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA
EX768848       --> CGATGGAAAACGAAGGAGCATTTCCATGTGACAACACATAGCAGAAAAGA

               151    -    201
UN22940        --> GAAGAAAACTAAA-CTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- GAAGAAAACTAAAACTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> GAAGAAAACTAAAACTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
FD937077       --> GAAGAAAACTAAAACTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
EV571647       --> GAAGAAAACTAAA-CTACACTTTCTTTCGCGACTCTTGACTTTGATTAGA
EY926081       --> GAAGAAAACTAAA-CTACACTTTCTTTTGTGAGTCTTGACTTTGATTAGA
EV529921       --> GAAGAAAACTAAAACTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
EX767253       --> GAAAAAAACTAAA-CTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
EY937239       --> GAAGAAAACTAAA-CTACACTTTCTTTTGCGACTCTTGACTTTGATTAGA
EX768848       --> GAAGAAAACTAAA-CTACACTTTCTTTCGCGACTCTTGACTTTGATTAGA

               201    -    251
UN22940        --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
FD937077       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
EV571647       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
EY926081       --> TTAGCAGACTGCTCATAAACTTATCTTTATGATAAGTAAA-CTCAACCCT
EV529921       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
EX767253       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT
EY937239       --> TTAGCAGACTGCTTATAAACTTATCTTTATGATAAGTAAAAATCAACCCT
EX768848       --> TTAGCAGACTGCTTATAAACTTATCTTTATGACAAGTAAA-CTCAACCCT

               251    -    301
UN22940        --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
FD937077       --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EV571647       --> CCGTAACAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EY926081       --> CCGTAAGGAGTTTCAGGTCTTTACTAATCTAATTTGTCTCCTCCATTCTG
EV529921       --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EX767253       --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EY937239       --> CCGTAAGAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG
EX768848       --> CCGTAACAAATTTCAGGTTTTTACTAATCTAATTTATCTCCTCCATTCTG

               301    -    351
UN22940        --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
FD937077       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
EV571647       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
EY926081       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
EV529921       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCTTTT
EX767253       --> CTTGTTGCTCTTCTCGGACTCCTCCTTTATCTGCTGAAAAAGCTTCTTTT
EY937239       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGAAGCTTCCTTT
EX768848       --> CTTGTTGCTCTTCTTGGACTCCTCCTTTATCTGCTGAAGGAGCTTCTTTC

               351    -    401
UN22940        --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EX763120       <-- ..................................................
EV566536       <-- ..................................................
FD946523       <-- ..................................................
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
FD937077       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAAACGCAGTAAGTGAAA
EV571647       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EY926081       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EV529921       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EX767253       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EY937239       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA
EX768848       --> GGAATCGGTAACCTTTGTCAGTTCCATAGATGTAATCGCAGTAAGTGAAA

               401    -    451
UN22940        --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTc...
EX763120       <-- ...GAAGCAAAGTTGCTTTGGCTTTGTC-TCCAACGTAATGATGGTAATC
EV566536       <-- ...........................CCTCCAACGTAATGATGGTAATC
FD946523       <-- ...................................GTAATGATG-T-ATC
EV525092       <-- ..................................................
EY941725       <-- ..................................................
FD941442       <-- ..................................................
EY929721       <-- ..................................................
FD935286       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTc...
FD937077       --> ACTGAAGCAAAGTTGCTTTGGCTTCGTCCTCCAACGTAATGATGGTAATC
EV571647       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
EY926081       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
EV529921       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
EX767253       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
EY937239       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGTAATC
EX768848       --> ACTGAAGCAAAGTTGCTTTGGCTTTGTCCTCCAACGTAATGATGGCAATC

               451    -    501
UN22940        --> ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
EV566536       <-- ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
FD946523       <-- ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
EV525092       <-- .TGATACTCAGCTCCACCGTAGAACGGAATGAATTTCGTCAGAGTCCATG
EY941725       <-- .................................TTTCGTCAGAGTCCATG
FD941442       <-- ..............................................CATG
EY929721       <-- ..................................................
FD935286       --> ..................................................
FD937077       --> ATGATACTCAGCTCCACCGTAGAACGGAATGAATTTCGTCAGAGTCCATG
EV571647       --> ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
EY926081       --> ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
EV529921       --> ATGATACTCAGCTCCACCGTAGAACGGAATGAATTTCGTCAGAGTCCATG
EX767253       --> ATGATACTCAGCTCCCCCATAAAACGGAATGAATTTCGTCAGAGTCCATG
EY937239       --> ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG
EX768848       --> ATGATACTCAGCTCCACCATAGAACGGAATGAATTTCGTCAGAGTCCATG

               501    -    551
UN22940        --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EV566536       <-- GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGACGTAAAGCA
FD946523       <-- GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EV525092       <-- GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EY941725       <-- GAAA-TCATATCCGCTGTGAGTCTCAATGGCTTCAATCTG-CGTAAAGCA
FD941442       <-- GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EY929721       <-- ..................................................
FD935286       --> ..................................................
FD937077       --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EV571647       --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGACGTAAAGCA
EY926081       --> GAAAATCATACCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EV529921       --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EX767253       --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EY937239       --> GAAAATCATATCCGCTGTGAGTCTCAATGGCTTCAATCTGGCGTAAAGCA
EX768848       --> GAAAATCATACCCGCTGTGAGTCTCAATGGCTTCAATCTGACGTAAAGCA

               551    -    601
UN22940        --> ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................  Raphanus sativus var. oleiformis
EX763120       <-- ATCCACAACCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566536       <-- ATCCACAACCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGACCAAG  Raphanus raphanistrum subsp. landra
FD946523       <-- ATCCACAGCCAGAAGGTAATAATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus sativus cv Early Scarlet Globe
EV525092       <-- ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus raphanistrum subsp. maritimus
EY941725       <-- ATCCACAGCCAGAAGGTA-TCATGTGACCAGGAGCAATAGCAG-TCCAAG  Raphanus sativus cv Early Scarlet Globe
FD941442       <-- ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGGCCAAG  Raphanus sativus var. oleiformis
EY929721       <-- ...........GAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus sativus var. oleiformis
FD935286       --> ..................................................  Raphanus sativus var. oleiformis
FD937077       --> ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGGCCAAG  Raphanus sativus var. oleiformis
EV571647       --> ATCCACAACCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGACCAAG  Raphanus raphanistrum subsp. landra
EY926081       --> ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus sativus var. oleiformis
EV529921       --> ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGGCCAAG  Raphanus raphanistrum subsp. maritimus
EX767253       --> ATCCACAACCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937239       --> ATCCACAGCCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGTCCAAG  Raphanus sativus cv Early Scarlet Globe
EX768848       --> ATCCACAACCAGAAGGTAATCATGTGACCAGGAGCAATAGCAGGACCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN22940        --> AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................  Raphanus sativus var. oleiformis
EX763120       <-- AAACGTGGGAACACCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566536       <-- AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus raphanistrum subsp. landra
FD946523       <-- AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCGTAAGGAG  Raphanus sativus cv Early Scarlet Globe
EV525092       <-- AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCGTAAGGAG  Raphanus raphanistrum subsp. maritimus
EY941725       <-- AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCGTAAGGAG  Raphanus sativus cv Early Scarlet Globe
FD941442       <-- AAACGTGGGAACACCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus sativus var. oleiformis
EY929721       <-- AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus sativus var. oleiformis
FD935286       --> ..................................................  Raphanus sativus var. oleiformis
FD937077       --> AAACGTGGGAACACCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus sativus var. oleiformis
EV571647       --> AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus raphanistrum subsp. landra
EY926081       --> AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus sativus var. oleiformis
EV529921       --> AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCGTAAGGAG  Raphanus raphanistrum subsp. maritimus
EX767253       --> AAACGTGGGAACACCAAGAAGCAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937239       --> AAAAGTCGGAACCCCAAGAAGCAAAACCTCAGCCCAATGGGCGTAAGGAG  Raphanus sativus cv Early Scarlet Globe
EX768848       --> AAAAGTCGGAACCCCAAGAAACAAAACCTCAGCCCAATGGGCATAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN22940        --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EV566536       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
FD946523       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EV525092       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EY941725       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
FD941442       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EY929721       <-- CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
FD935286       --> ..................................................
FD937077       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EV571647       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EY926081       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EV529921       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EX767253       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGAT.............
EY937239       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC
EX768848       --> CAGCATACCCAATAGGAGCAGTGTACTCATGATGGATATGATGAATCTTC

               701    -    751
UN22940        --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................  Raphanus sativus var. oleiformis
EX763120       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTTGTATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566536       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus raphanistrum subsp. landra
FD946523       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus cv Early Scarlet Globe
EV525092       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus raphanistrum subsp. maritimus
EY941725       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus cv Early Scarlet Globe
FD941442       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus var. oleiformis
EY929721       <-- TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus var. oleiformis
FD935286       --> ..................................................  Raphanus sativus var. oleiformis
FD937077       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus var. oleiformis
EV571647       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus raphanistrum subsp. landra
EY926081       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus var. oleiformis
EV529921       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus raphanistrum subsp. maritimus
EX767253       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937239       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus sativus cv Early Scarlet Globe
EX768848       --> TCATAACCCCACTTGCTATGAAAGAATCTATGAACCCAATAGTTCGTATA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN22940        --> GTCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................  Raphanus sativus var. oleiformis
EX763120       <-- GTCCTCCACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCAAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566536       <-- ATCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus raphanistrum subsp. landra
FD946523       <-- GTTCTCCACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus sativus cv Early Scarlet Globe
EV525092       <-- ATCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus raphanistrum subsp. maritimus
EY941725       <-- GTCCTCCACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus sativus cv Early Scarlet Globe
FD941442       <-- GTCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCAAAAG  Raphanus sativus var. oleiformis
EY929721       <-- GTCCTCCACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus sativus var. oleiformis
FD935286       --> ..................................................  Raphanus sativus var. oleiformis
FD937077       --> GTCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCaaaa..  Raphanus sativus var. oleiformis
EV571647       --> ATCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus raphanistrum subsp. landra
EY926081       --> GTCCTCCACCAAAAA...................................  Raphanus sativus var. oleiformis
EV529921       --> ATCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus raphanistrum subsp. maritimus
EX767253       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937239       --> GTCCTCCACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAAG  Raphanus sativus cv Early Scarlet Globe
EX768848       --> ATCCTCTACCAAAAAGTAAACCACTAACTGCGCCGCAATCTCCCCGAAA.  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN22940        --> ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATGGAA-GGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................  Raphanus sativus var. oleiformis
EX763120       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATAGAA-GGATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV566536       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATGGAA-GGATA  Raphanus raphanistrum subsp. landra
FD946523       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATAGAA-GGATA  Raphanus sativus cv Early Scarlet Globe
EV525092       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATGGAA-GGATA  Raphanus raphanistrum subsp. maritimus
EY941725       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATAGAA-GGATA  Raphanus sativus cv Early Scarlet Globe
FD941442       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATGGAA-GGATA  Raphanus sativus var. oleiformis
EY929721       <-- ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATAGAA-GGATA  Raphanus sativus var. oleiformis
FD935286       --> ..................................................  Raphanus sativus var. oleiformis
FD937077       --> ..................................................  Raphanus sativus var. oleiformis
EV571647       --> ACGGTAACGGCAACCCACTTCGAATCTCAATCATCTGGATGGAAAGGATA  Raphanus raphanistrum subsp. landra
EY926081       --> ..................................................  Raphanus sativus var. oleiformis
EV529921       --> ACGGTAACGGCAACCCACTTCGAAT.........................  Raphanus raphanistrum subsp. maritimus
EX767253       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937239       --> ACGGTAACGGCAACCactt...............................  Raphanus sativus cv Early Scarlet Globe
EX768848       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN22940        --> AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
EV566536       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
FD946523       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
EV525092       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
EY941725       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
FD941442       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
EY929721       <-- AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> AGAGACGAGCTGGAGAGGGCCGACGACGAGGAGGAACATCTTCATGACGT
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               901    -    951
UN22940        --> CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTTTTGACCTTGGGCTGG
EV566536       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
FD946523       <-- CTCGGTAGCAAAGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
EV525092       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
EY941725       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
FD941442       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
EY929721       <-- CTCGGTAGCAACGGAACATGTCGGAGAAGGAGTTCTTGACCTTGGGCTGG
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> CTCGGTAGCAACGGAACATGTCGGAGA.......................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               951    -   1001
UN22940        --> ATCTTGTACCGGTCGAACCAGGCGGATCGAGCCAATTCGAGGAAGACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- ATCTTGTACCGGTCGAACCAGGCGGATCGAGCCAGTTCGAGGAAGACGAG
EV566536       <-- ATCTTGTACCGATCGAACCAGGCGGATCGAGCCAGTTCGAGGAAGACGAG
FD946523       <-- ATCTTGTACCGGTCGAACCAGGCGGATCGAGCCAATTCGAGGAAGACGAG
EV525092       <-- ATCTTGTACCGATCGAACCAGGCGGATCGAGCCAGTTCGAGGAAGACGAG
EY941725       <-- ATCTTGTACCGGTCGAACCAGGCGGATCGAGACAATTCGAGGAAGACGAG
FD941442       <-- ATCTTGTACCGGTCGAACCAGGCGGATCGAGCCAATTCGAGGAAGACGAG
EY929721       <-- ATCTTGTACCGATCGAACCAGGCGGATCGAGCCAATTCGAGGAAGACGAG
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1001   -   1051
UN22940        --> AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
EV566536       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
FD946523       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
EV525092       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
EY941725       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
FD941442       <-- AGGGAGAGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
EY929721       <-- AGGGAGGGGGACGAGGGAGAAGATGAGGAAGAGGAAGAGGATGTTGTGGC
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1051   -   1101
UN22940        --> AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
EV566536       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
FD946523       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
EV525092       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
EY941725       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
FD941442       <-- AGTAGATGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
EY929721       <-- AGTAGAGGTAGTAATCTGACTTCGTGGCGGAGTATTCGAACCAGAGCGTC
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1101   -   1151
UN22940        --> TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCAccc................
EV566536       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
FD946523       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
EV525092       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
EY941725       <-- TCCAGGGTCGTTAGGCTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
FD941442       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
EY929721       <-- TCCAGGGTCGTTAGGTTTCGGCCTAAGGCCATCGAGGCATCTTCGATCGT
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1151   -   1201
UN22940        --> TGCGTAAGGGATCATTGTGTGTTCCGCGAGATGATCTCGTTGACGTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- ..................................................
EV566536       <-- TGCGTAAGGGATCATTGTG--TTCCGCGAGATGATCTCGTTGACGTGGTG
FD946523       <-- TGCGTAAGGGATCATTGTGTGTTCCGCGAGATGATCTCGTTGACGTGGTG
EV525092       <-- TGCGTAAGGGATCATTGTG--TTCCGCGAGATGATCTCGTTGACGTGGTG
EY941725       <-- TGCGTAAGGGATCATTGTGTGTTCCGCGAGATGATCTCGTTGACGTGGTG
FD941442       <-- TGCGTAAGGGATCATTGTGTGTTCCGCGAGATGATCTCGTTGACGTGGTG
EY929721       <-- TGCGTAAGGGATCATTGTGTGTTCCGCGAGATGATCTCGTTGACGTGGTG
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1201   -   1251
UN22940        --> GGATCCAGAGAGA--TGA-GAGAGTGGAGAGCGATGAGAGAGAGAGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD939078       <-- ..................................................
EX763120       <-- ..................................................
EV566536       <-- GGATCCAGAGAGA--TGA-GAGAGTGGAGAGCGATGAGAAAGAGAGGAGA
FD946523       <-- GGATCCAGAGAGA-GAGATGAGAGAGTGGAGCGATGAGAGAGAGAGGAGA
EV525092       <-- GGATCCAGAGAGA--TGA-GAGAGTGGAGAGCGATGAGAAAGAGAGGAGA
EY941725       <-- GGATCCAGAGAGAGATGA-GAGAGTGGA--GCGATGAGAGAGAGAGGAGA
FD941442       <-- GGATCCc...........................................
EY929721       <-- GGATCCAGAGAGAgagacgagagagtggagccc.................
FD935286       --> ..................................................
FD937077       --> ..................................................
EV571647       --> ..................................................
EY926081       --> ..................................................
EV529921       --> ..................................................
EX767253       --> ..................................................
EY937239       --> ..................................................
EX768848       --> ..................................................

               1251   -   1301
UN22940        --> GTGTCGTTGTTAGCTCC
                   ~~~~~~~~~~~~~~~~~
FD939078       <-- .................
EX763120       <-- .................
EV566536       <-- GTcc.............
FD946523       <-- GTGTCGTTGTTAGCTCC
EV525092       <-- GTccc............
EY941725       <-- GTcc.............
FD941442       <-- .................
EY929721       <-- .................
FD935286       --> .................
FD937077       --> .................
EV571647       --> .................
EY926081       --> .................
EV529921       --> .................
EX767253       --> .................
EY937239       --> .................
EX768848       --> .................