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Alignment for radish unigene UN22978

               1      -     51
UN22978        --> GCTCAAGCAATTGAACTATCAAGAACCCATCCTCATGACATTATATTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ..................................................
EV539580       <-- ..................................................
EY925408       <-- ..................................................
EX749704       <-- ..................................................
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> GCTCAAGCAATTGAACTATCAAGAACCCATCCTCATGACATTATATTGAT
EX767691       --> GCTCAAGCAATTGAACTATCAAGAACCCATCCTCATGACATTATATTGAT
EX767350       --> .................ATCAAGAACCCATCCTCATGACATTATATTGAT
EY920890       --> ................cATCAAGAACCCATCCTCATGACATTATATTGAT
EV543333       --> ..................................................
EX753330       --> ..................................................
EV571033       --> ..................................................

               51     -    101
UN22978        --> TTGTAACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ..................................................
EV539580       <-- ..................................................
EY925408       <-- ..................................................
EX749704       <-- ..................................................
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> TTGTAACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA
EX767691       --> TTGTAACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA
EX767350       --> TTGTAACGAAAACCAATTCATTTAGTATGATGAAATGAGCCAAATGGTCA
EY920890       --> TTGTAACGAAAACCAATTCGTTTAGTATGATGAAATGAGTCAAATGGTCA
EV543333       --> .cGTAACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA
EX753330       --> ..GTAACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA
EV571033       --> ....AACGAAAACCAATTCATTTAGTATGATGAAATGAGTCAAATGGTCA

               101    -    151
UN22978        --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCCCTAAAAAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ..................................................
EV539580       <-- ..................................................
EY925408       <-- ..................................................
EX749704       <-- ..................................................
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCC--TAAAAAAA-G
EX767691       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCCCTAAAAAAAAG
EX767350       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCC-TAAAAAAAAA
EY920890       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCCCTAAAAAAA-G
EV543333       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCC--TAAAAAAA-G
EX753330       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCCCTAAAAAAAAG
EV571033       --> TTTGATCTCATCATTCAACAGTACATTCTCTTTCCCCCCCTAAAAAAAAG

               151    -    201
UN22978        --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ..................................................
EV539580       <-- ..................................................
EY925408       <-- ..................................................
EX749704       <-- ..................................................
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EX767691       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EX767350       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EY920890       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EV543333       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EX753330       --> AAAAGCAAAA-TGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA
EV571033       --> AAAAGCAAAAATGGGATTTGAATGTGTATGTTTTCATGATCTCTCAAAGA

               201    -    251
UN22978        --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ........ACATAAACCATGCCTTTCTCACTAAGCTGAAGTTC-TTCCTC
EV539580       <-- .........................CTCACTAAGCTGAAGCTCTTTCCTC
EY925408       <-- ..................................................
EX749704       <-- ..................................................
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC
EX767691       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC
EX767350       --> AACCTT............................................
EY920890       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC
EV543333       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGCTCCTTCCTC
EX753330       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC
EV571033       --> GACCTTTAACATAAACCATGCCTTTCTCACTAAGCTGAAGTTCCTTCCTC

               251    -    301
UN22978        --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EV539580       <-- ATCTCTTCAACCTGTACATCATCTCCTTGAACCACAATCTCATCCAGTTT
EY925408       <-- .TCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EX749704       <-- .............................AACAACAATCTCATCCAGTTT
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EX767691       --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EX767350       --> ..................................................
EY920890       --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EV543333       --> ATCTCTTCAACCTGTACATCATCTCCTTGAACCACAATCTCATCCAGTTT
EX753330       --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT
EV571033       --> ATCTCTTCAACTTGCACATCATCTCCTTGAACAACAATCTCATCCAGTTT

               301    -    351
UN22978        --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCTTTCCTCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- CCCCTTTCTTCCCACCATCATCTTCACTTTGATCTC-TCTTTCCTCGACG
EV539580       <-- CCCCTTTCTTCCCACCATCATCTTCACCTTTATCTCCTCTTTCCTCGACG
EY925408       <-- CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCCTTCCTCGACG
EX749704       <-- CCC-TTTCTTCCCACCATCATCTTCAC-TTGATCTC-TCTTTCCTCGACG
FD542938       <-- ..................................................
EX747982       <-- ..................................................
EX763239       <-- ..................................................
EX752046       --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCTTTCCTCGACG
EX767691       --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCTTTCCTCGACG
EX767350       --> ..................................................
EY920890       --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCCTTCCTCGACG
EV543333       --> CCCCTTTCTTCCCACCATCATCTTCACCTTTATCTCCTCTTTCCTCGACG
EX753330       --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTCCTCTTTCCTCGACG
EV571033       --> CCCCTTTCTTCCCACCATCATCTTCACCTTGATCTC-TCTTTCCTCGACG

               351    -    401
UN22978        --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EV539580       <-- CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EY925408       <-- CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EX749704       <-- CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
FD542938       <-- ...TCTTCCAGTAATACGCTC-TGCGAGTGGACTAAGAATGGTAATGAAG
EX747982       <-- ......TCCAGTAATACGCTC-TGCGAGTGGGCTAAGAATGGTAATGAAG
EX763239       <-- ..................................................
EX752046       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGGCTAAGAATGGTAATGAAG
EX767691       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EX767350       --> ..................................................
EY920890       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EV543333       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EX753330       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG
EV571033       --> CCTTCTTCCAGTAATACGCTCCTGCGAGTGGACTAAGAATGGTAATGAAG

               401    -    451
UN22978        --> AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. landra
EV539580       <-- AACCAGTTATTTCCAAAATCAGGAACTGTAATGGTTAGGACAAGACCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY925408       <-- AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. landra
EX749704       <-- AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. maritimus
FD542938       <-- AACCAGTTATTTCCAAAATCAGGAACTGTAATGGTTAGGACAAGACCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747982       <-- AACCAGTTATTTCCAAAATCAGGAACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. maritimus
EX763239       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752046       --> AACCAGTTATTTCCAAAATCAGGAACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. maritimus
EX767691       --> AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920890       --> AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. landra
EV543333       --> AACCAGTTATTTCCAAAATCAGGAACTGTAATGGTTAGGACAAGACCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753330       --> AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. maritimus
EV571033       --> AACCAGTTATTTCCAAAATCAGGCACTGTAATGGTTAGTACAAGACCCAC  Raphanus raphanistrum subsp. landra

               451    -    501
UN22978        --> GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. landra
EV539580       <-- GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY925408       <-- GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. landra
EX749704       <-- GCTTGCTAAGATTATACATGTACAGAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. maritimus
FD542938       <-- GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747982       <-- ACTTGCTAAGCTTATACATGTACAGAACGTGAGTAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. maritimus
EX763239       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752046       --> ACTTGCTAAGCTTATACATGTACAGAACGTGAGTAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. maritimus
EX767691       --> GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920890       --> GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. landra
EV543333       --> GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753330       --> GCTTGCTAAGATTATACATGTACAGAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. maritimus
EV571033       --> GCTTGCTAAGCTTATACATGTACAAAACGTGAGCAGAGCAGCTTGTCCTC  Raphanus raphanistrum subsp. landra

               501    -    551
UN22978        --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- TACTCGGAACCATTGTTCCTTCAAGCGTGATTGTCTCTCCACGATCAGTA
EV539580       <-- TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EY925408       <-- TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EX749704       <-- TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
FD542938       <-- TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EX747982       <-- TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGGTCAGTA
EX763239       <-- ..................................................
EX752046       --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGGTCAGTA
EX767691       --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EX767350       --> ..................................................
EY920890       --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EV543333       --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EX753330       --> TACTCGGAACCATTGTTCCTTCAAACGTGATTGTCTCTCCACGATCAGTA
EV571033       --> TACTCGGAACCATTGTTCCTTCAAGCGTGATTGTCTCTCCACGATCAGTA

               551    -    601
UN22978        --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EV539580       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EY925408       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX749704       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
FD542938       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX747982       <-- ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX763239       <-- ..................................................
EX752046       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX767691       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX767350       --> ..................................................
EY920890       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EV543333       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EX753330       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG
EV571033       --> ACATTAAAGTTCTTCCTTGTGAAGAAAGAAAGAATCTCTCCAGCAACTTG

               601    -    651
UN22978        --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
EV539580       <-- CTTCGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGATTTTCTCACTA
EY925408       <-- CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
EX749704       <-- CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
FD542938       <-- CTTCGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGATTTTCTCACTA
EX747982       <-- CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACGAACGTCTTCCTCACTA
EX763239       <-- ..................................................
EX752046       --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACGAACGTCTTCCTCACTA
EX767691       --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
EX767350       --> ..................................................
EY920890       --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
EV543333       --> CTTCGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGATTTTCTCACTA
EX753330       --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA
EV571033       --> CTTTGGTTCCTTCTTGATCCCTTCGCTAACAACAAACGTCTTCCTCACTA

               651    -    701
UN22978        --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EV539580       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EY925408       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EX749704       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
FD542938       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EX747982       <-- TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGTCCAGGAACTGAG
EX763239       <-- .........................GAGAGACCAAAGACCTGGAATTGAG
EX752046       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGTCCAGGAACTGAG
EX767691       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EX767350       --> ..................................................
EY920890       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EV543333       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EX753330       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG
EV571033       --> TCTTTGATTTAACAGAGCGTTTGATGAGAGACCAAAGACCTGGAACTGAG

               701    -    751
UN22978        --> ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. landra
EV539580       <-- ATAACGAACAAACCCAGAGGCGTATAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY925408       <-- ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. landra
EX749704       <-- ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. maritimus
FD542938       <-- ATAACGAACAAACCCAGAGACGTATAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747982       <-- ATAACGAACAAACCCAAAGACGTATAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. maritimus
EX763239       <-- ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTA--AAG-AGCCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752046       --> ATAACGAACAAACCCAAAGACGTATAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. maritimus
EX767691       --> ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920890       --> ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. landra
EV543333       --> ATAACGAACAAACCCAGAGGCGTATAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753330       --> ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. maritimus
EV571033       --> ATAACGAACAAACCCAAAGACGTGTAGTAGCTAGCTAACGAGTAGCCACC  Raphanus raphanistrum subsp. landra

               751    -    801
UN22978        --> ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. landra
EV539580       <-- ACCAGTCTCCGCCATCAACAGTAACGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY925408       <-- ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. landra
EX749704       <-- ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. maritimus
FD542938       <-- ACCAGTCTCCGCCATCAACAGTAACGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX747982       <-- ACCAGTCTCCGCCATCAACAGTAACGAACTAGGGCTCTGTTCCCACCATT  Raphanus raphanistrum subsp. maritimus
EX763239       <-- ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX752046       --> ACCAGTCTCCGCCATCAACAGTA...........................  Raphanus raphanistrum subsp. maritimus
EX767691       --> ACCAGTCTCCGCCATCAACAGTAATGAA......................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX767350       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY920890       --> ACCAGTCTCCGCCATCAACAGTAA..........................  Raphanus raphanistrum subsp. landra
EV543333       --> ACCAGTCTCCGCCATCAACAGTAACGAA......................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753330       --> ACCAGTCTCCGCCATCAACAGTAATGAA......................  Raphanus raphanistrum subsp. maritimus
EV571033       --> ACCAGTCTCCGCCATCAACAGTAATGAACTAGGGTTATGTTCCCACCATT  Raphanus raphanistrum subsp. landra

               801    -    851
UN22978        --> GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
EV539580       <-- GATGAATCTGAATCGCTGAAGAGGATACAGCGGAGAGAGGCTCCACAACC
EY925408       <-- GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
EX749704       <-- GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
FD542938       <-- GATGAATCTGAATCGCTGAAGAAGATACAGCGGAGAGAGGCTCCACAACC
EX747982       <-- GATGAATCTGAATCGCGGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
EX763239       <-- GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTCCACAACC
EX752046       --> ..................................................
EX767691       --> ..................................................
EX767350       --> ..................................................
EY920890       --> ..................................................
EV543333       --> ..................................................
EX753330       --> ..................................................
EV571033       --> GATGAATCTGAATCGCTGAAGAAGATACGGCGGAGAGAGGCTC.......

               851    -    901
UN22978        --> ATGGCGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- ATGGCGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGTCT
EV539580       <-- ATGGCGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGTCT
EY925408       <-- ATGGCGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCc...........
EX749704       <-- ATGGCGGTGACGGCGGAGACTCTGTTCTGCTTCGTCTCACATTCCCGTCT
FD542938       <-- ATGACGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGTCT
EX747982       <-- ATGGCGGTGACGGCGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGCCT
EX763239       <-- ATGGCGGTGACGGGGGAGACTCTGTTCCGCTTCGTCTCACATTCCCGTCT
EX752046       --> ..................................................
EX767691       --> ..................................................
EX767350       --> ..................................................
EY920890       --> ..................................................
EV543333       --> ..................................................
EX753330       --> ..................................................
EV571033       --> ..................................................

               901    -    951
UN22978        --> CCGCCGTGGAAGAACCCTTTTGATCTCTACGTCTCTTGAAGTCACCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- CCGCCGTGGAAGAACCCTTTTGATCTCTACGTCTCTTGAAGTCACCCATG
EV539580       <-- CCGCCGTGGAAGAACCCTTTTGATCCCTACGTCTCTTGc...........
EY925408       <-- ..................................................
EX749704       <-- CCGCCGTGGAAGAACCCTTTTGATCTCTACGTCTCTTGAAGTCACCCATG
FD542938       <-- CCGCCGTGGAAGAACCCTTTTGATCCCTACGTCTCTTGAAGTCAGCCATG
EX747982       <-- CCGCCGTGGAAGAACCCTTTTGATCCCTACGTCTCTTGAAGTCACCCATG
EX763239       <-- CCGCCGTGGAAGAACCCTTTTGATCTGTACGTCTCTTGAAGTCACCCATG
EX752046       --> ..................................................
EX767691       --> ..................................................
EX767350       --> ..................................................
EY920890       --> ..................................................
EV543333       --> ..................................................
EX753330       --> ..................................................
EV571033       --> ..................................................

               951    -   1001
UN22978        --> GACAAGACAACGGCGGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- GACAAGACAACGGCGGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
EV539580       <-- ..................................................
EY925408       <-- ..................................................
EX749704       <-- GACAAGACAACGGCGGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
FD542938       <-- GACAAGACAACGGCGGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
EX747982       <-- GACAAGACAACGGCTGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
EX763239       <-- GACAAGACAACGGCGGAGAAAACAGCTTCGTCGCCATTGTCCGAAAGTCG
EX752046       --> ..................................................
EX767691       --> ..................................................
EX767350       --> ..................................................
EY920890       --> ..................................................
EV543333       --> ..................................................
EX753330       --> ..................................................
EV571033       --> ..................................................

               1001   -   1051
UN22978        --> AAAGCTTTATCTGTGTCTTCAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EV565760       <-- AAAGCTTTATCTGTGTCgtctgcc.
EV539580       <-- .........................
EY925408       <-- .........................
EX749704       <-- AAAGCTTTATCTGTGTCTcc.....
FD542938       <-- AAAGCTTTATCTGTGTCgtctcc..
EX747982       <-- AAAGCTTTATCTGGGTCTTCAGTCC
EX763239       <-- AAAGCTTTATCTGTGTCgtctgcc.
EX752046       --> .........................
EX767691       --> .........................
EX767350       --> .........................
EY920890       --> .........................
EV543333       --> .........................
EX753330       --> .........................
EV571033       --> .........................