RadishBase

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Alignment for radish unigene UN22979

               -7     -     43
UN22979        --> ........GGACTCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ..................................................
FD945733       <-- ..................................................
EW721841       <-- ..................................................
FD544516       <-- ..................................................
EX898753       <-- ..................................................
EX752505       <-- ..................................................
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> ........GGACTCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTC
EX894432       --> ggaaatctctACTCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTC
EW725593       --> ..........ggTCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTC
EY937849       --> ...........ggCTGCAAAGTTTAAACCTTAAGCAATGGCTCTCTCTTC
EW724098       --> ..............................TAAGCAATGGCTCTCTCTTC
FD548313       --> ..............................ggacCAATGGCTCTCTCTTC
EX748628       --> ..................................................
EV569248       --> ..................................................

               43     -     93
UN22979        --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCTCATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ..................................................
FD945733       <-- ..................................................
EW721841       <-- ..................................................
FD544516       <-- ..................................................
EX898753       <-- ..................................................
EX752505       <-- ..................................................
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCTCATCTC
EX894432       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCTCATCTC
EW725593       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCTCATCTC
EY937849       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACAATACACGATCCTCATCTC
EW724098       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTACACGATCCTCATCTC
FD548313       --> GCTCTCTCCTCTGCCCATGAAGTCACTTGACACTCCACGATCCTCACCTC
EX748628       --> ............................................gATCTC
EV569248       --> ..................................................

               93     -    143
UN22979        --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ...........................................GAGGCGT
FD945733       <-- ..................................................
EW721841       <-- ..................................................
FD544516       <-- ..................................................
EX898753       <-- ..................................................
EX752505       <-- ..................................................
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
EX894432       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
EW725593       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
EY937849       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
EW724098       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
FD548313       --> C-GT-TC-TCAAGGTCTCTTTACCATCTTCCGAGATACCCATTGAGGCGT
EX748628       --> CCGTCTCCTCAAGGTCTCTTTACCATGTTCCGAGATACCCATTGAGGCGT
EV569248       --> ..................................................

               143    -    193
UN22979        --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTT----
FD945733       <-- ...........CTCCCGTTCAAA-CCAGAACGAGATTCATCAAGTTCTAG
EW721841       <-- ..................................................
FD544516       <-- ..................................................
EX898753       <-- ..................................................
EX752505       <-- ..................................................
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
EX894432       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
EW725593       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
EY937849       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
EW724098       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
FD548313       --> CTACAGCTAATCTCCCGTTCAAAACCAGAAAGAGATTCGTTAAGTTCTAG
EX748628       --> CTACAGCTAATCTCCCGTTCAAAACCAGAACGAGATTCATCAAGTTCTAG
EV569248       --> .................TTCAAAACCAGAACGAGATTCATCAAGTTCTAG

               193    -    243
UN22979        --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- -CTAGATTGTTGCTCCGGTGGAGAATCGAAGACGTGGAAGAGGTTTTTAT
FD945733       <-- GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
EW721841       <-- ...AGATTGT-GCTCCGGTGGAGAATCGAATACGTGGAAGAGGTTTTTAT
FD544516       <-- ...........................................TTTTTGT
EX898753       <-- ..................................................
EX752505       <-- ..................................................
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
EX894432       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
EW725593       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
EY937849       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
EW724098       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTAT
FD548313       --> GGAAGATTGTTGCTCCGGCAGAGAATCGAATACGTGGAAGGGGTTTTTGT
EX748628       --> GGAAGATTGTTGCTCCGGTAGAGAATCGAATACGTGGAAGAGGTTTTTGT
EV569248       --> -----ATTGTTGCTCCGGTGGAGAATCGAAGACGTGGAAGAGGTTTTTAT

               243    -    293
UN22979        --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
FD945733       <-- CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EW721841       <-- CTGGAGCATTAGCAGCGACTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
FD544516       <-- CAGGAGCATTAGCAGCTGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EX898753       <-- ..GGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTT-CCAGCA
EX752505       <-- .........TAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EX894432       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EW725593       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EY937849       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EW724098       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
FD548313       --> CAGGAGCATTAGCAGCTGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EX748628       --> CAGGAGCATTATCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA
EV569248       --> CTGGAGCATTAGCAGCGGCTGTGATAGTCTCGAGCTCAGGGTTTCCAGCA

               293    -    343
UN22979        --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ATGGCAGATCTTAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus raphanistrum subsp. landra
FD945733       <-- ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EW721841       <-- ATGGCAGATCTTAACAAGTTCGAGGCGGATATACGTGGCAAGTTTGGTAT  Raphanus sativus var. oleiformis
FD544516       <-- ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898753       <-- ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EX752505       <-- ATGGCAGATCTTAACAAGTTCGAGGCGGATATACTTAGCGAGTTTGGTAT  Raphanus raphanistrum subsp. maritimus
EY902494       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950201       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EX894432       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EW725593       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EY937849       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGACGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
EW724098       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus sativus cv Early Scarlet Globe
FD548313       --> ATGGCAGATCTCAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748628       --> ATGGCAGATCTTAACAAGTTCGAGGCGGATATACTTAGCGAGTTTGGTAT  Raphanus raphanistrum subsp. maritimus
EV569248       --> ATGGCAGATCTTAACAAGTTCGAGGCGGATATACGTGGCGAGTTTGGTAT  Raphanus raphanistrum subsp. landra

               343    -    393
UN22979        --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
FD945733       <-- AGGATCAG---CTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EW721841       <-- AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
FD544516       <-- AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EX898753       <-- AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EX752505       <-- AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EY902494       <-- .........................GCTGATCTCAGCAAAACAGTTCACT
EW728636       <-- ..................................................
FD950201       --> AGGATCAGCT---CAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EX894432       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EW725593       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EY937849       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EW724098       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
FD548313       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EX748628       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT
EV569248       --> AGGATCAGCTGCTCAGTTTGGTTCTGCTGATCTCAGCAAAACAGTTCACT

               393    -    443
UN22979        --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
FD945733       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EW721841       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
FD544516       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EX898753       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EX752505       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EY902494       <-- CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EW728636       <-- ..................................................
FD950201       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EX894432       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EW725593       --> CCAACGAAAATGTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EY937849       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EW724098       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
FD548313       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EX748628       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG
EV569248       --> CCAACGAAAATTTCAGAAGAGCCAACTTCACTTCTGCAGATATGAGAGAG

               443    -    493
UN22979        --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- TCTGACTTCAGTGGTTCAACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. landra
FD945733       <-- TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EW721841       <-- TCTGACTTCAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus var. oleiformis
FD544516       <-- TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898753       <-- TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EX752505       <-- TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. maritimus
EY902494       <-- TCTGACTTCAGTGGTTCAACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950201       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EX894432       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EW725593       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EY937849       --> TCTGATTTTAGTGGTTCGACCTTCAATGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
EW724098       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus sativus cv Early Scarlet Globe
FD548313       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748628       --> TCTGATTTTAGTGGTTCGACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. maritimus
EV569248       --> TCTGACTTCAGTGGTTCAACCTTCAACGGCGCCTATCTTGAGAAAGCAGT  Raphanus raphanistrum subsp. landra

               493    -    543
UN22979        --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
FD945733       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EW721841       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
FD544516       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EX898753       <-- TGCATACAAAGCTAATTTCTCAGGTGCTGATTTGAGTGATGCATTGATGG
EX752505       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EY902494       <-- TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EW728636       <-- ..................................................
FD950201       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EX894432       --> TGCATACAAAGCTAATTTCTCAGGTGCTGATTTGAGTGATGCATTGATGG
EW725593       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EY937849       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EW724098       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
FD548313       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EX748628       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG
EV569248       --> TGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGTGATACATTGATGG

               543    -    593
UN22979        --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTTCGT
FD945733       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EW721841       <-- ATCGGATGGTGCTAAACTAGGCAAATCTGACGAATGCAATTCTTGTACGT
FD544516       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EX898753       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EX752505       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EY902494       <-- ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EW728636       <-- ..................................................
FD950201       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EX894432       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EW725593       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EY937849       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EW724098       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
FD548313       --> ATCGGATGGTGCTAAACGAGGCAA-TCTGACAAATGCAATTCTTGTACGT
EX748628       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTACGT
EV569248       --> ATCGGATGGTGCTAAACGAGGCAAATCTGACAAATGCAATTCTTGTTCGT

               593    -    643
UN22979        --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- TCGGTTCTAACACGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. landra
FD945733       <-- TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus sativus cv Early Scarlet Globe
EW721841       <-- TCGGTTCTAACACGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus sativus var. oleiformis
FD544516       <-- TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898753       <-- TCGGTTCTAACCCGTAGCGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus sativus cv Early Scarlet Globe
EX752505       <-- TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. maritimus
EY902494       <-- TCGGTTCTAACACGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950201       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus sativus cv Early Scarlet Globe
EX894432       --> TCGGTTCTAACCCGTAGCGACCTCGGTGGTGCCAAGAT............  Raphanus sativus cv Early Scarlet Globe
EW725593       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGA.........  Raphanus sativus cv Early Scarlet Globe
EY937849       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAAGCGCTGA  Raphanus sativus cv Early Scarlet Globe
EW724098       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTG...................  Raphanus sativus cv Early Scarlet Globe
FD548313       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAAGCGCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748628       --> TCGGTTCTAACCCGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. maritimus
EV569248       --> TCGGTTCTAACACGTAGTGACCTCGGTGGTGCCAAGATCGAAGGCGCTGA  Raphanus raphanistrum subsp. landra

               643    -    693
UN22979        --> CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
FD945733       <-- CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
EW721841       <-- CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
FD544516       <-- CTTTAGTGACGCTGTGATTGATCTTCCTCAAAAACAGGCTCTGTGTAAAT
EX898753       <-- CTCTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
EX752505       <-- CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
EY902494       <-- CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
EW728636       <-- ..................................................
FD950201       --> CTTTAGTGACGCTGTGATTGATCTTCTT......................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> CTTTAGTGACGCTGTGATTGATCTTCTTCAAAA.................
EW724098       --> ..................................................
FD548313       --> CTTTAGTGACGCTGTGATTGATCTTCCTCAAAA.................
EX748628       --> CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT
EV569248       --> CTTTAGTGACGCTGTGATTGATCTTCTTCAAAAACAGGCTCTGTGTAAAT

               693    -    743
UN22979        --> ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
FD945733       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
EW721841       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGAGCCTT
FD544516       <-- ACACAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
EX898753       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
EX752505       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT
EY902494       <-- ACGCAAACGGGACAAACCCATTGACTGGAGTTAGCACAAGGAAGTCTCTT
EW728636       <-- ..................................................
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCA..............
EV569248       --> ACGCAAACGGGACAAACCCATTGACTGGAGTGAGCACAAGGAAGTCTCTT

               743    -    793
UN22979        --> GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCCCCTTCGTCTCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- GGCTGTGGAAATAGTAGGAGAAATGCATATGGCTCCCCTTCGTCTCCTTT  Raphanus raphanistrum subsp. landra
FD945733       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCACCTTCGTCTCCTTT  Raphanus sativus cv Early Scarlet Globe
EW721841       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCCCCTTCGTCTCCTTT  Raphanus sativus var. oleiformis
FD544516       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCACCTTCGTCTCCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898753       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCACCTTCGTCTCCTTT  Raphanus sativus cv Early Scarlet Globe
EX752505       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCACCTTCGTCTCCTTT  Raphanus raphanistrum subsp. maritimus
EY902494       <-- GGCTGTGGAAATAGCAGGAGAAATGCATATGGCTCCCCTTCGTCTCCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW728636       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950201       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX894432       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW725593       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY937849       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW724098       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD548313       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX748628       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV569248       --> GGCTGTGGAAATAGTAGGAGAAATGCATATGGCTCCCCTTCGTCTCCTTT  Raphanus raphanistrum subsp. landra

               793    -    843
UN22979        --> ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG
FD945733       <-- ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG
EW721841       <-- ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG
FD544516       <-- ACTCAGTGCACCACCTCAACGTCTTTTCGGTCGTGATGGATTCTGCGATG
EX898753       <-- ACTCAGTGCACCACCTCAACGTCTTTTCGGTCGTGATGGATTTTGCGATG
EX752505       <-- ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG
EY902494       <-- ACTCAGTGCGCCACCTCAACGTCTTTTCGGTCGTGATGGATTCTGCGATG
EW728636       <-- .....GTGCACCACCTCAACGTCTTGTCGGTCGGGATGGATTTTGCGATG
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ..................................................
EV569248       --> ACTCAGTGCACCACCTCAACGTCTTCTCGGTCGTGATGGATTCTGCGATG

               843    -    893
UN22979        --> AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
FD945733       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
EW721841       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGACCATG
FD544516       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
EX898753       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
EX752505       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
EY902494       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTTTGTTAAGATCATG
EW728636       <-- AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ..................................................
EV569248       --> AGAAGACCGGTCTTTGTGACGCCTCGTAGTTTCAGTCCGTTAAGATCATG

               893    -    943
UN22979        --> TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
FD945733       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
EW721841       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
FD544516       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
EX898753       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
EX752505       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTTGTG
EY902494       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTAATAATATGTTGTG
EW728636       <-- TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAA.........
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ..................................................
EV569248       --> TGTGTGGTTACAATGCAGATGTAATAACATTTGTTTCATAATATGTT...

               943    -    993
UN22979        --> TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGACC
FD945733       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGAC.
EW721841       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTac........
FD544516       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAc............
EX898753       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGACC
EX752505       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTAGTGAATTGTAAATGACC
EY902494       <-- TTACATTAGTCGTGTATTGTATGTTTTATAGTA-TGAATTGTAAATG...
EW728636       <-- ..................................................
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ..................................................
EV569248       --> ..................................................

               993    -   1043
UN22979        --> AGAAAGAGAGAAAATGGATGATACACTGAGTAAAGGAGACTATAATCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- gg................................................
FD945733       <-- ..................................................
EW721841       <-- ..................................................
FD544516       <-- ..................................................
EX898753       <-- AGAAAGAGAGAAAATGGATGATACACTGAGTAAAGGAGACTATAATCACC
EX752505       <-- AGAAAGAGAGAAAATGGATGATACACTGAGTAAAGGAGACTATAATCACC
EY902494       <-- ..................................................
EW728636       <-- ..................................................
FD950201       --> ..................................................
EX894432       --> ..................................................
EW725593       --> ..................................................
EY937849       --> ..................................................
EW724098       --> ..................................................
FD548313       --> ..................................................
EX748628       --> ..................................................
EV569248       --> ..................................................

               1043   -   1093
UN22979        --> TCTATGCAAGTGCAAATATATTTTGTTGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573833       <-- ...............................
FD945733       <-- ...............................
EW721841       <-- ...............................
FD544516       <-- ...............................
EX898753       <-- TCTATGCAAGTGCAAATATATTTTGTTGAGG
EX752505       <-- ...............................
EY902494       <-- ...............................
EW728636       <-- ...............................
FD950201       --> ...............................
EX894432       --> ...............................
EW725593       --> ...............................
EY937849       --> ...............................
EW724098       --> ...............................
FD548313       --> ...............................
EX748628       --> ...............................
EV569248       --> ...............................