1      -     51
UN22994        --> GGCTCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> GGCTCTCTCGATCTCGGTCCTCGATCGACGACTGAACCGGAGACGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> GGCTCTCTCGATCTCGGTTCTCGATCGACGACTGAACCAGAGACGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> ..ggCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGAGACC  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> ..ggCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGGGACC  Raphanus sativus cv Early Scarlet Globe
FD577979       --> ..ggCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGGGACC  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> ..ggCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGGGACC  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> ..ggCTCTCGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGGGACC  Raphanus sativus cv Early Scarlet Globe
FD973050       --> .......ggGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGAGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> .......ggGATCTCGGTTCTCGATCGACGACTGAACCGGAGACGAGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> ..................................................  Raphanus raphanistrum subsp. landra
EV548094       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> ..................................................  Raphanus sativus var. oleiformis

               51     -    101
UN22994        --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTC---CGGCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTCAAACGGCGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTCAAACGGCGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTC---CGGCGATC  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> GATTTAACCGCCGTGAAACTCAAAAGCGAAATAAAT-TC---CGGCGATC  Raphanus sativus cv Early Scarlet Globe
FD577979       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAAT-TC---CGGCGATC  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAAT-TC---CGGCAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> GATTTAACCGCCGTGAAACTCAAAAGCGAAATAAAT-TC---CGGCGATC  Raphanus sativus cv Early Scarlet Globe
FD973050       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTC---CGGCGATC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> GATTTAACCGCCGTGAAACTCAAAATCGAAATAAATCTC---CGGCGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ............ggGAAACTCAAAATCGAAATAAATCTC---CGGCGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> ...........................GAAATAAATCTC---CGGCGATC  Raphanus raphanistrum subsp. landra
EV548094       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN22994        --> CGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> CGATTGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> CGATTGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> CGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> TGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus sativus cv Early Scarlet Globe
FD577979       --> TGATCGCGATGAGTAACAGCGAACTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> TGATCGCGATGAGTAACAGCGAACTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> TGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus sativus cv Early Scarlet Globe
FD973050       --> CGATTGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> CGATCGCGATGGGTAACTGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> CGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> CGATCGCGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTT  Raphanus raphanistrum subsp. landra
EV548094       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> ..................................................  Raphanus sativus var. oleiformis

               151    -    201
UN22994        --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- .............gaaTGAGGAAGCAGATCTCATGCTCTCTT-ACTTGAC
EX899222       <-- ........................CAGATCTCATGCTCTCTTTACTTGAC
FD968814       <-- ..................................................
FD976546       <-- ..................................................
EW739282       <-- ..................................................
EY912389       <-- ..................................................
FD945257       <-- ..................................................
EX760068       <-- ..................................................
EX756202       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD544178       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
EW734099       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
EX894984       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD577979       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD578018       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD949636       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATTCTCTCTTTACTTGAC
FD973050       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD980690       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
EY916763       --> CAATTCCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTCTTTACTTGAC
FD556972       --> CAATTCCCCTTTGAATTGAGGAAGCAGGTCTCATGCTCTCTTTACTTGAC
EV548094       --> ...............................CATGCTCTCTTTACTTGAC
EY946012       --> ..............................gCATGCTCTCTTTACTTGAC
FD939905       --> ..................................................

               201    -    251
UN22994        --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- CAACAAGACGGACAATCATGTGGCAT-CAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- CAACAAGACGGACAATCATGTGGCATTCAAGGTAAAGACAACGAATCCGA  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> CAACAAGACGGACAATCATGTGGCTTTCAAG------ACAACGAATCCGA  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTAAAGACAACGAATCCGA  Raphanus sativus cv Early Scarlet Globe
FD577979       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTAAAGACAACAAATCCGA  Raphanus sativus cv Early Scarlet Globe
FD973050       --> CAACAAGACGGACAATCATGTGGCTTTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> CAACAAGACGGACAATCATGTGGCTTTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> CAACAAGACGGACAATCATGTGGCTTTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. landra
EV548094       --> CAACAAGACGGACAATCATGTGGCTTTCAAGGTTAAGACAACGAATCCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> CAACAAGACGGACAATCATGTGGCATTCAAGGTAAAGACAACGAATCCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> ..................................................  Raphanus sativus var. oleiformis

               251    -    301
UN22994        --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- AAAAGTATTGCGTAAGGC-TAACACTGGAGTTGTTCTTCCAAGGTCCACT
EX899222       <-- AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD968814       <-- AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD976546       <-- .AAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EW739282       <-- ......................CACTGGAGTTGTTCTTCCAAGGTCCACT
EY912389       <-- ......................CACTGGAGTTGTTCTTCCAAGGTCCACT
FD945257       <-- ......................CACTGGAGTTGTTCTTCCAAGGTCCACT
EX760068       <-- ..................................................
EX756202       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD544178       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EW734099       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EX894984       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD577979       --> AAAAGTATTGCGTAAGGCCTAACACTGTAGTTGTTCTTCCAAGGTCCACT
FD578018       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD949636       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD973050       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD980690       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EY916763       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD556972       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EV548094       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
EY946012       --> AAAAGTATTGCGTAAGGCCTAACACTGGAGTTGTTCTTCCAAGGTCCACT
FD939905       --> ..................................................

               301    -    351
UN22994        --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCAGATAT  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ......................AAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus sativus cv Early Scarlet Globe
FD577979       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCATCAGATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCAGATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCAGATAT  Raphanus sativus cv Early Scarlet Globe
FD973050       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. landra
EV548094       --> TGTGAAGTCCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCCGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> TGTGAAGTTCTCGTGACAATGCAAGCTCAAAAGGAAGCTCCTTCAGATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> .................................................g  Raphanus sativus var. oleiformis

               351    -    401
UN22994        --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EX899222       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD968814       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD976546       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EW739282       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EY912389       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD945257       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGACCTGGTG
EX760068       <-- GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EX756202       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD544178       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EW734099       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EX894984       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD577979       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGACCTGGTG
FD578018       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGACCTGGTG
FD949636       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGACCTGGTG
FD973050       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD980690       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EY916763       --> GCGATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
FD556972       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGACTGCTAGTCCTGGTG
EV548094       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG
EY946012       --> GCAATGCAAGGACGAGTTTCTACTTCAAGGTGTGATTGCTAGACCTGGTG
FD939905       --> GCAATGCAAGGACAAGTTTCTACTTCAAGGTGTGATTGCTAGTCCTGGTG

               401    -    451
UN22994        --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- TCACGGCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- TCACGCCCAGGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> TCACGCCCAGGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus cv Early Scarlet Globe
FD577979       --> TCACGGCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> TCACGGCCAAGGATGTCACTCCTGATATGTTTAGCAAAGAGGCTGGGCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> TCACGGCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus cv Early Scarlet Globe
FD973050       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> TCACGGCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. landra
EV548094       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGCTGGGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> TCACGGCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> TCACGCCCAAGGATGTCACTCCTGAGATGTTTAGCAAAGAGGGTGGGCAT  Raphanus sativus var. oleiformis

               451    -    501
UN22994        --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EX899222       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD968814       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD976546       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EW739282       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EY912389       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD945257       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EX760068       <-- TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EX756202       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD544178       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EW734099       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EX894984       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD577979       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD578018       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD949636       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD973050       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD980690       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EY916763       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD556972       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACGTATGTTGCTCCACCACAACC
EV548094       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
EY946012       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC
FD939905       --> TTAGTTGAGGAGACTAAGCTGAGAGTTACTTATGTTGCTCCACCACAACC

               501    -    551
UN22994        --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EX899222       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD968814       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD976546       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EW739282       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EY912389       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD945257       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCACCAAGGGCTT
EX760068       <-- ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EX756202       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD544178       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EW734099       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EX894984       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD577979       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCACCAAGGGCTT
FD578018       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCACCAAGGGCTT
FD949636       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCACCAAGGGCTT
FD973050       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD980690       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EY916763       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
FD556972       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EV548094       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT
EY946012       --> ACCATCACCGGTTCACGAAGGTTCAGAAGAGGGTTCTTCACCAAGGGCTT
FD939905       --> ACCATCACCGGCTCACGAAGGTTCAGAAGAGGGTTCTTCTCCACGGGCTT

               551    -    601
UN22994        --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EX899222       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD968814       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTTTCAGAGACAT
FD976546       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTTTCAGAGACAT
EW739282       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTTTCAGAGACAT
EY912389       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD945257       <-- CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EX760068       <-- CTGTTTCTGATTACGGCACACAGGCTTCTGAGTTTTCTTTTCAGAGACAT
EX756202       --> CTGTTTCTGATTACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD544178       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EW734099       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EX894984       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD577979       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD578018       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD949636       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD973050       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD980690       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EY916763       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD556972       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
EV548094       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCCTCTCAGAGACAT
EY946012       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT
FD939905       --> CTGTTTCTGATAACGGCACACAGGCTTCTGAGTTTTCTTCTCAGAGACAT

               601    -    651
UN22994        --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAATACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ATAGCGGACAAGGTTGAACCTCAAGAAAACACATTTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Early Scarlet Globe
FD577979       --> ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> ATAGCCGACAAGGTTGAACC..............................  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Early Scarlet Globe
FD973050       --> ATAGCGGACAAGGTTGAACCTCAAGAAAATACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ATAGCGGA..........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAGGGGCTCT  Raphanus raphanistrum subsp. landra
EV548094       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> ATAGCCGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> ATAGCGGACAAGGTTGAACCTCAAGAAAACACATCTGAGGCAAGGGCTCT  Raphanus sativus var. oleiformis

               651    -    701
UN22994        --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCATTCAACTAAACAACA  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGTCATTCAACTAAACAACA  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> CATCACAAAGCTAACCGAGGAAAA-CAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> CATCACAAAGCTAACCGAGGAAAA-CAGTCTGCCCTTCAACTAAACAACA  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCATTCAACTAAACAACA  Raphanus sativus cv Early Scarlet Globe
FD577979       --> CATCACAAAGCTAACCGAGGAAAA-CAGTCTGCCATTCAACTAAACAACA  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> CATCACAAAGCTAACCGAGGAAAA-CAGTCTGTCATTCAACTAAACAACA  Raphanus sativus cv Early Scarlet Globe
FD973050       --> CATCACAAAGCTAACCGAGGAAAAA.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> CATCACAAAGCTAACCGAGGAAAA-CAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCATTCAACTAAACAACA  Raphanus raphanistrum subsp. landra
EV548094       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCCTTCAACTAAACAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCATTCAACTAAACAACA  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> CATCACAAAGCTAACCGAGGAAAAACAGTCTGCCATTCAACTAAACAACA  Raphanus sativus var. oleiformis

               701    -    751
UN22994        --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EX899222       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD968814       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD976546       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EW739282       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EY912389       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD945257       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EX760068       <-- AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EX756202       --> AACTTCAAAGAGAACTG.................................
FD544178       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EW734099       --> AACTTCAAAGAGA-CTGGAC-AGTTGAGACGTGACAGTAg..........
EX894984       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD577979       --> A-CTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD578018       --> ..................................................
FD949636       --> AACT..............................................
FD973050       --> ..................................................
FD980690       --> AACTTCAA-GAG-ACTGGACCAGTTGAGACGTGACAGTAAG.........
EY916763       --> ..................................................
FD556972       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTAACAGTAAGAGAGGCCAA
EV548094       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
EY946012       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA
FD939905       --> AACTTCAAAGAGAACTGGACCAGTTGAGACGTGACAGTAAGAGAGGCCAA

               751    -    801
UN22994        --> AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EX899222       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
FD968814       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
FD976546       <-- AGTGGTATGCCTTTTATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EW739282       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EY912389       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
FD945257       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EX760068       <-- AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EX756202       --> ..................................................
FD544178       --> AGTGGTATGCCTTTGATGTACGTcctc.......................
EW734099       --> ..................................................
EX894984       --> AGTGGTATGCCTTTGATGTACGTTCTTCTG....................
FD577979       --> AGTGGTATGCCTTTGATGTACGTTCT........................
FD578018       --> ..................................................
FD949636       --> ..................................................
FD973050       --> ..................................................
FD980690       --> ..................................................
EY916763       --> ..................................................
FD556972       --> AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EV548094       --> AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
EY946012       --> AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT
FD939905       --> AGTGGTATGCCTTTGATGTACGTTCTTCTGGTCGGACTAATCGGTCTAAT

               801    -    851
UN22994        --> TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTTCGTGCCAC  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTACGTGCCAC  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- TCTGGGATACATTATGAAGAGCACATAACCGCCTGAGTTCTACGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTTCGTGCCAC  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- TCTGGGATACATTATGAAGAGCACATAACCCCCTGAGTTCTACGTGC...  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD577979       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD973050       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> TCTGGGATACATTATGAAG...............................  Raphanus raphanistrum subsp. landra
EV548094       --> TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTGCGTGCCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> TCTGGGATACATTATGAAGAGCACATAACCACCTGAGTTCTTCGTGCCAC  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> TCTGGGATACATTATGAAGAGCAGATAACCACCTGAGTTCTTCGTGCCAC  Raphanus sativus var. oleiformis

               851    -    901
UN22994        --> ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
EX899222       <-- ACAGGAAAGAAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
FD968814       <-- ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
FD976546       <-- ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
EW739282       <-- ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
EY912389       <-- ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
FD945257       <-- ACAGGAAAGAAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
EX760068       <-- ..................................................
EX756202       --> ..................................................
FD544178       --> ..................................................
EW734099       --> ..................................................
EX894984       --> ..................................................
FD577979       --> ..................................................
FD578018       --> ..................................................
FD949636       --> ..................................................
FD973050       --> ..................................................
FD980690       --> ..................................................
EY916763       --> ..................................................
FD556972       --> ..................................................
EV548094       --> ACAGGAAA-AAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTT
EY946012       --> ACAGaagagac.......................................
FD939905       --> ACAGGAAAGAAGAACAAAGGAAACAGACTATTTCTTTTATTTTTGTATTC

               901    -    951
UN22994        --> GAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- GAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899222       <-- GACAATTTCACCTGAAAGGTGTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus sativus cv Early Scarlet Globe
FD968814       <-- GAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976546       <-- GAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW739282       <-- GAAAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus sativus cv Rat-Tail Radish #3870
EY912389       <-- GACAATTTCACCTGAAAGGTCTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD945257       <-- GACAATTTCACCTGAAAGGTGTCTGATTGATTTGTAGTGAAAATGTCAAT  Raphanus sativus cv Early Scarlet Globe
EX760068       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756202       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544178       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW734099       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX894984       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD577979       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD578018       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949636       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD973050       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD980690       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916763       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD556972       --> ..................................................  Raphanus raphanistrum subsp. landra
EV548094       --> GAAA-TTTCACCTGAAAG-TCTCTGATTGATTTGTAGTG...........  Raphanus raphanistrum subsp. raphanistrum (NY)
EY946012       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD939905       --> GACAATTTCACCTG....................................  Raphanus sativus var. oleiformis

               951    -   1001
UN22994        --> AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTTACTTTTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTTACTTTTGGTA
EX899222       <-- AACTCATTTTGCTT....................................
FD968814       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTT..........
FD976546       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTTACc.......
EW739282       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTTTACTTTTGGTA
EY912389       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTTTTTATTct..........
FD945257       <-- AACTCATTTTGCTTTGTTTTTATTTAAACTTATTTATTTc..........
EX760068       <-- ..................................................
EX756202       --> ..................................................
FD544178       --> ..................................................
EW734099       --> ..................................................
EX894984       --> ..................................................
FD577979       --> ..................................................
FD578018       --> ..................................................
FD949636       --> ..................................................
FD973050       --> ..................................................
FD980690       --> ..................................................
EY916763       --> ..................................................
FD556972       --> ..................................................
EV548094       --> ..................................................
EY946012       --> ..................................................
FD939905       --> ..................................................

               1001   -   1051
UN22994        --> CCAATAACATGGTCCGCTAAATCTGGATTTTATTTATTTAT.........
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539839       <-- CCAATAACATGGTCCGCT................................
EX899222       <-- ..................................................
FD968814       <-- ..................................................
FD976546       <-- ..................................................
EW739282       <-- CCAATAACATGGTCCGCTAAATCTGGATTTTATTTATTTATtttccatcc
EY912389       <-- ..................................................
FD945257       <-- ..................................................
EX760068       <-- ..................................................
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