RadishBase

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Alignment for radish unigene UN23039

               -2     -     48
UN23039        --> ...GCTAGAAGGGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ...GCTAGAAGGGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
EV538578       <-- ..................................................
FD982129       <-- ..................................................
FD551100       <-- ..................................................
EV551047       <-- ..................................................
FD541879       <-- ..................................................
EV537945       <-- ..................................................
EY913965       <-- ..................................................
EY925171       <-- ..................................................
EV538731       <-- ..................................................
EV569044       <-- ..................................................
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> ...GCTAGAAGGGTCTCAAAATTCACCATTTCAGAAACAAAAAAACAATA
FD977753       --> ..cGCTAGAAGGGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
EV542072       --> cttgtTAGAAGGGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
FD546969       --> .........gGGGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
FD538073       --> ...........GGTCTCAAAATTCACCATTTCAGAGACAAAAAAACAATA
EV542558       --> ..................................................
EY910103       --> ..................................................
EV542674       --> ..................................................
EY920706       --> ..................................................
FD545127       --> ..................................................
EV573644       --> ..................................................

               48     -     98
UN23039        --> CAAATACTGCTGACAAAAAAAAAAAA-TACTAATACAAATACACTGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- CAAATACTGCTGACAAAAAAAAAAAA-TACTAATACAAATACACTGTCCA
EV538578       <-- ..............................................TCCA
FD982129       <-- ...............................................CCA
FD551100       <-- ..................................................
EV551047       <-- ..................................................
FD541879       <-- ..................................................
EV537945       <-- ..................................................
EY913965       <-- ..................................................
EY925171       <-- ..................................................
EV538731       <-- ..................................................
EV569044       <-- ..................................................
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> CAAATACTGCTGACAAAAAAAAAAAA-TACTAATACAAATACACTGTCCA
FD977753       --> CAAATACTGATGACAAAAAAAAA----TACTAATACAAATACACTGTCCA
EV542072       --> CAAATACTGCTGACAAAAAAAAAA---TACTAATACAAATACACTGTCCA
FD546969       --> CAAATACTGCTGACAAAAAAAAAAAAATACTAATACAAATACACTATCCA
FD538073       --> CAAATACTGCTGACAAAAAAAAA----TACTAATACAAATACACTGTCCA
EV542558       --> ........gctgctgacAAAAAAAAA-TACTAATACAAATACACTGTCCA
EY910103       --> ............................ACTAATACAAATACACTGTCCA
EV542674       --> ........................................ACACTGTCCA
EY920706       --> ................................................CA
FD545127       --> ..................................................
EV573644       --> ..................................................

               98     -    148
UN23039        --> ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- ACAACATGCTAAGTAGCTCTGCTCTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- ACAACATGCTAAGTAGCTCTGCTGTGT-CTTATAATGGGTGCA-AAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- .................TCTGCTGTGT-CTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538731       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD550264       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> ACAACATGCTAAGTAGCTCTGCTCTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> ACAACATGCTAAGTAGCTCTGCTCTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> ACAACATGCTAAGTAGCTCTGCTCTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> ACAACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> ACAACGTGCTAAGTAGCTCTGCTCTGTTCTTATAATGGGTGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> ACAACACGCTAAGTAGCTTTGCTCTGTTCTTATAATGGGTGCATAAATAC  Raphanus raphanistrum subsp. landra
FD545127       --> ..AACATGCTAAGTAGCTCTGCTGTGTTCTTATAATGGGGGCATAAATGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> ...............GCTTTGCTCTGTTCTTATAATGGGTGCATAAATAC  Raphanus raphanistrum subsp. landra

               148    -    198
UN23039        --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EV538578       <-- AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
FD982129       <-- AAAGACACTGTCCAACAAACACCAGAAACTAAAT-ACACCAAAACTTTTA
FD551100       <-- AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EV551047       <-- .....CACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
FD541879       <-- .....................aacacagaactaaTACATCAAA-C-TTTA
EV537945       <-- .............................................TTTTA
EY913965       <-- ..................................................
EY925171       <-- ..................................................
EV538731       <-- ..................................................
EV569044       <-- ..................................................
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> AAAGACACTGTCCAACAAACACCAAAAACTAAATTACATCAAAACTTTTA
FD977753       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACACCAAAACTTTTA
EV542072       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
FD546969       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
FD538073       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EV542558       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EY910103       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EV542674       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
EY920706       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA
FD545127       --> AAAAACACTGTCCAACAAACACCAAAAACTAAATTACATCAAAACTTTTA
EV573644       --> AAAGACACTGTCCAACAAACACCAGAAACTAAATTACATCAAAACTTTTA

               198    -    248
UN23039        --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV538578       <-- CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD982129       <-- CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD551100       <-- CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV551047       <-- CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD541879       <-- -CGCATGCTCAAA-T-GCATAT-GAT-GAGCTGATCTAAA-CAT-ATAGC
EV537945       <-- CCGCACGCTCAAAATGGCATATGGATGGAGCTGATCTAAAAAATAATAGC
EY913965       <-- ..................................................
EY925171       <-- ..................................................
EV538731       <-- ..................................................
EV569044       <-- ..................................................
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD977753       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV542072       --> CCGCACGCTCAAAATGGCATATGGATGGAGCTGATCTAAAAAATAATAGC
FD546969       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD538073       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV542558       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EY910103       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV542674       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EY920706       --> CCACATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
FD545127       --> CCGCATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC
EV573644       --> CCACATGCTCAAAATGGCATATGGATGGAGCTGATCTAAAACATAATAGC

               248    -    298
UN23039        --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EV538578       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD982129       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD551100       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EV551047       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD541879       <-- AGTGTGACCACTCATGT-GC-TCTCTATACATATATATGACCAGACTAAA
EV537945       <-- AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EY913965       <-- ..................................................
EY925171       <-- ..................................................
EV538731       <-- ..................................................
EV569044       <-- ..................................................
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD977753       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EV542072       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD546969       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
FD538073       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EV542558       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EY910103       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EV542674       --> AGTGTGACCACTCATGTTGCTTCTCTATACATATATATGACCAGACTAAA
EY920706       --> AGTGTG-CCACTCATGCTGCTTCTCTATACATATATATGACCAGACTAAA
FD545127       --> AGTGTGACCCCTCATGTTGCTTCTCTATACATATATATGACCAAACTAAA
EV573644       --> AGTGTG-CCACTCATGCTGCTTCTCTATACATATATATGACCAGACTAAA

               298    -    348
UN23039        --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV538578       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD982129       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD551100       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV551047       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD541879       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTC-TGAGCAG
EV537945       <-- TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EY913965       <-- .............................................AGCAG
EY925171       <-- .............................................AGCAG
EV538731       <-- ..............................................GCAG
EV569044       <-- ..............................................GCAG
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> TGAATAGCTTCAAAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD977753       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV542072       --> TGAATAGCTTCAAAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD546969       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD538073       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV542558       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EY910103       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV542674       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
EY920706       --> TGAATAGCTTCAGAAGGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG
FD545127       --> TGAATAGCTTCAAAAGGGGGGGGCGATGGGAGTGGTTATGTCCTGAGCAG
EV573644       --> TGAATAGCTTCAGA-GGTGGTGGCGATGGGAGTGGTTATGTCCTGAGCAG

               348    -    398
UN23039        --> CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV538578       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD982129       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD551100       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV551047       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD541879       <-- CCAATCTTTCAGAGACACAAGCCGAGGATTTCAAGTTACACTTGATAAGC
EV537945       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EY913965       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EY925171       <-- CCAATCTTTCAGAGACACAAGCCAAGGACTTCAAGTTACACTTGATGAGT
EV538731       <-- CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV569044       <-- CCAATCTTTCAGAGACACAAGCCAAGGACTTCAAGTTACACTTGATGAGT
FD550264       <-- ..............ACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD549026       <-- ..................................................
EV544368       --> CCAATCTTTCAAAAACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD977753       --> CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV542072       --> CCAATCTTTCAAAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
FD546969       --> CCAATCTTTC........................................
FD538073       --> CCAATCTTTCAGAAACACAAGCCGAGGATTTCAAGTTACACTTGATAAGC
EV542558       --> CCAATCTTTCAGAAACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EY910103       --> CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV542674       --> CCAATCTTTCAGAGACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EY920706       --> CCAATCTTTCAGAGACACAAGCCAAGGACTTCAAGTTACACTTGATGAGT
FD545127       --> CCAATCTTTCAAAAACACAAGCCAAGGATTTCAAGTTACACTTGATAAGC
EV573644       --> CCAATCTTTCAGAGACACAAGCCAAGGACTTCAAGTTACACTTGATGAGT

               398    -    448
UN23039        --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAGCATC
EV538578       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD982129       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD551100       <-- GATTCCGCAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV551047       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD541879       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGC-TTGAGGAACATC
EV537945       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EY913965       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EY925171       <-- GATTCCACGAAATAACAAGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV538731       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV569044       <-- GATTCCACGAAATAACAAGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD550264       <-- GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD549026       <-- ..................................................
EV544368       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAGCATC
FD977753       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV542072       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD546969       --> ..................................................
FD538073       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV542558       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EY910103       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV542674       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EY920706       --> GATTCCACGAAATAACAAGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
FD545127       --> GATTCCACAAAGTAACAGGTCTCATCTTTAGTGTTGCCTTGAGGAACATC
EV573644       --> GATTCCACGAAATAACAAGTCTCATCTTTAGTGTTGCCTTGAGGAACATC

               448    -    498
UN23039        --> GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- GACAACAAAAGATTCAATCACCATAGTCCCCGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- CACAACAAAAGATTCAATCACCATAGTTCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. landra
EV538731       <-- GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- CACAACAAAAGATTCAATCACCATAGTTCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. landra
FD550264       <-- GACAACAAAAGATTCAACCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> GACAACAAAAGATTCAATCACCACAGTCCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> CACAACAAAAGATTCAATCACCATAGTTCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. landra
FD545127       --> GACAACAAAAGATTCAATCACCATAGTCCCTGCTCTCCCATCGAGCATCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> CACAACAAAAGATTCAATCACCATAGTTCCTGCTCTCCCATCGATCATCT  Raphanus raphanistrum subsp. landra

               498    -    548
UN23039        --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV538578       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD982129       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD551100       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV551047       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD541879       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV537945       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EY913965       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGACCACCA
EY925171       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV538731       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAGGTCTATGATCACCA
EV569044       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD550264       <-- CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD549026       <-- ..................................................
EV544368       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD977753       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV542072       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD546969       --> ..................................................
FD538073       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EV542558       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
EY910103       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGACCACCA
EV542674       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAGGTCTATGATCACCA
EY920706       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA
FD545127       --> CCGGATGTACAGTCAAAATTGAAAAATAGTTCTTAAGTCTATGATCACCA
EV573644       --> CCGGATGTACAGTCAAGATTGAAGAATAGTTCTTAAGTCTATGATCACCA

               548    -    598
UN23039        --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. landra
EV538731       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. landra
FD550264       <-- CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- ..................agaATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. landra
FD545127       --> CCAATGATGTTGATACC.................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> CCAATGATGTTGATACCGAGGATGCGTTCATCATCATCAAGCTGTTCAAG  Raphanus raphanistrum subsp. landra

               598    -    648
UN23039        --> TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- TCTCTCGGTACTAGTTGTAGCCGGc.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. landra
EV538731       <-- TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. landra
FD550264       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> TCTCTCGGTACTAGTTGTAGCCGGc.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> TCTCTCGGTACTAGTTGTAGCCGGAAGACC....................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> TCTCTCGGTACTAGTTGTAGCCGGGAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. landra
FD545127       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> TCTCTCGGTACTAGTTGTAGCCGGAAGACCAGATTTGACGTTGACTTCTC  Raphanus raphanistrum subsp. landra

               648    -    698
UN23039        --> TGAGACTACCGATCTCAGGATGACCATGAACTGTGCATCTGCTTACAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- TGAGACTACCGATCTCAGGAAGATCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- TGAGACTACCGATCTCAGGATGTCCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. landra
EV538731       <-- TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- TGAGACTACCGATCTCAGGATGTCCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. landra
FD550264       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> TGAGACTACCGATCTCAGGAAGATCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> TGAGACTACCGATCTCAGGATGGCCATGAACTGTGCATCTGCTGACAAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> TGAGACTACCGATCTCAGGAAGACCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> TGAGACTACCGATCTCAGGATGTCCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. landra
FD545127       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> TGAGACTACCGATCTCAGGATGTCCATGAACTGTGCATCTGCTTACAAAT  Raphanus raphanistrum subsp. landra

               698    -    748
UN23039        --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. landra
EV538731       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. landra
FD550264       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAA....  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGG.................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. landra
FD545127       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> GGTTTGTATTTCTGCGGCTGATCAAATCTTCGGACAAGAGACCAAACGAG  Raphanus raphanistrum subsp. landra

               748    -    798
UN23039        --> ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................
EV538578       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTCCACTGATTCT
FD982129       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
FD551100       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EV551047       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
FD541879       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EV537945       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EY913965       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EY925171       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EV538731       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACGCTGATTCT
EV569044       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
FD550264       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
FD549026       <-- ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
EV544368       --> ..................................................
FD977753       --> ..................................................
EV542072       --> ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT
FD546969       --> ..................................................
FD538073       --> ..................................................
EV542558       --> ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTCCACTGATTCT
EY910103       --> ..................................................
EV542674       --> ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACGCTGATTCT
EY920706       --> ATGAACAGGGGCTTTAATGTATTTGACGAGAAC.................
FD545127       --> ..................................................
EV573644       --> ATGAACAGGGGCTTTAATGTATTTGACGAGAACAGAGGTACACTGATTCT

               798    -    848
UN23039        --> CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................
EV538578       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
FD982129       <-- CTCTGCAGTGGTGA-GATGATGCAACCGTGCGTACCGCACCGTGACAAGA
FD551100       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EV551047       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
FD541879       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EV537945       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACCGCGCCGTGACAAGA
EY913965       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EY925171       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EV538731       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EV569044       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
FD550264       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
FD549026       <-- CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EV544368       --> ..................................................
FD977753       --> ..................................................
EV542072       --> CTCTGCA...........................................
FD546969       --> ..................................................
FD538073       --> ..................................................
EV542558       --> CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EY910103       --> ..................................................
EV542674       --> CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA
EY920706       --> ..................................................
FD545127       --> ..................................................
EV573644       --> CTCTGCAGTGGTGATGATGATGCAACCGTGCGTACTGCGCCGTGACAAGA

               848    -    898
UN23039        --> GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................
EV538578       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCC.............
FD982129       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCcc..............
FD551100       <-- GCACCATGCATCTCTGAGATCCTCTACGATGATCTCCc............
EV551047       <-- GCACCATGCATCTCTGA-ATCCTCTACGctcc..................
FD541879       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
EV537945       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
EY913965       <-- GCACCATGCATCTCTGA-ATCCTCTACGATcc..................
EY925171       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATTTCCTCCATCTCTTATC
EV538731       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
EV569044       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
FD550264       <-- GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTGATC
FD549026       <-- GCACCATGCATCTCTGA-ATCCTCTACGATcc..................
EV544368       --> ..................................................
FD977753       --> ..................................................
EV542072       --> ..................................................
FD546969       --> ..................................................
FD538073       --> ..................................................
EV542558       --> GCACCATGCATCTCT...................................
EY910103       --> ..................................................
EV542674       --> GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC
EY920706       --> ..................................................
FD545127       --> ..................................................
EV573644       --> GCACCATGCATCTCTGA-ATCCTCTACGATGATCTCCTCCATCTCTTATC

               898    -    948
UN23039        --> TTCCTCGTGCCTTTAAGGAA-TCTGGTTTGCTCTCAATGGGAAGTGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538578       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982129       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD551100       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551047       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541879       <-- TTCCTCGTGCCTTTAAGGAA-TCTGGTTTGCTCTCAATGGGAAGTGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537945       <-- TTCCTCGTGCCTTTAAGGAA-TCTGGTTTGCTCTCAATGGGAAGTGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925171       <-- TTCCTTGTGATTTTAAGGAAAGCTGGTTTGGTCTCAATGAGAAGTGGATA  Raphanus raphanistrum subsp. landra
EV538731       <-- TTCCTCGTGCCTTTAAGGAA-TCTGGTTTGCCCTCAATGGGAAATGGATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569044       <-- TTCCTTGTGATTTTAAGGAAAGCTGGTTTGGTCTCAATGAGAAGTGGATA  Raphanus raphanistrum subsp. landra
FD550264       <-- TTCCTTGTGCTTTTtcc.................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD549026       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544368       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977753       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542072       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD546969       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD538073       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542558       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910103       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542674       --> TTCCTCGTGCCTTTA...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY920706       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545127       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573644       --> TTCCTTGTGattt.....................................  Raphanus raphanistrum subsp. landra

               948    -    998
UN23039        --> AGATGGAGAGGAAAGGCAGGAGACTAAAGAAAGAAGAATAAATTTAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548749       <-- ..................................................
EV538578       <-- ..................................................
FD982129       <-- ..................................................
FD551100       <-- ..................................................
EV551047       <-- ..................................................
FD541879       <-- AGATGGAGAGGAAAGGCAGGAGcc..........................
EV537945       <-- AGATGGA...........................................
EY913965       <-- ..................................................
EY925171       <-- AGATAGAGAGGAAAGGCAGGccc...........................
EV538731       <-- AGATGGAGAGGAAAGGCAGGAGACTcc.......................
EV569044       <-- AGATAGAGAGGAAAGGCAGGCGACTAAAGAAAGAAGAATAAATTTAGCTT
FD550264       <-- ..................................................
FD549026       <-- ..................................................
EV544368       --> ..................................................
FD977753       --> ..................................................
EV542072       --> ..................................................
FD546969       --> ..................................................
FD538073       --> ..................................................
EV542558       --> ..................................................
EY910103       --> ..................................................
EV542674       --> ..................................................
EY920706       --> ..................................................
FD545127       --> ..................................................
EV573644       --> ..................................................

               998    -   1048
UN23039        --> TTATCC
                   ~~~~~~
EV548749       <-- ......
EV538578       <-- ......
FD982129       <-- ......
FD551100       <-- ......
EV551047       <-- ......
FD541879       <-- ......
EV537945       <-- ......
EY913965       <-- ......
EY925171       <-- ......
EV538731       <-- ......
EV569044       <-- TTATCC
FD550264       <-- ......
FD549026       <-- ......
EV544368       --> ......
FD977753       --> ......
EV542072       --> ......
FD546969       --> ......
FD538073       --> ......
EV542558       --> ......
EY910103       --> ......
EV542674       --> ......
EY920706       --> ......
FD545127       --> ......
EV573644       --> ......