Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN23056

               1      -     51
UN23056        --> CTTTTAGTAATAGATTCTGTTTGTATTTTAATGTTTTTCTCAGTTCGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> CTTTTAGTAATAGATTCTGTTTGTATTTTAATGTTTTTCTCAGTTCGTAA
EV532969       --> ........................ATTTTAATGTTTTTCTCAGTTCGTAA
EX769600       --> ..............................tttTTTTTCTCAGTTCGTAA
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               51     -    101
UN23056        --> AAATCAACTAGATCTACAAAGTCAGATTAAAAGATGTTTCTCATAACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ........................GATTAAAAGATGTTTCTCATAACAA-
EY897574       <-- ......................cacATTAAAAGATGTTTCTCATAACAAA
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> AAATCAACTAGATCTACAAAGTCAGATTAAAAGATGTTTCTCATAACAAA
EV532969       --> AAATCAACTAGATCTACAAAGTCAGATTAAAAGATGTTTCTCATAACAAA
EX769600       --> AAATCCACTAGATCTACAAGATCAGATTCAAAGATGTTTATCATAACAAA
EV544437       --> ......................CAGATTCAAAGATGTTTATCATAACAAA
EY942652       --> .......................cGATTAAAAGATGTTTCTCATAACAAA
FD555523       --> ........................GATTAAAAGATGTTTCTCATAACAAA
FD565976       --> ......................cgGATTAAAAGATGTTTCTCATAACAAA
FD575030       --> .....................accGATTAAAAGATGTTTCTCATAACAAA
FD935799       --> ......................cgGATTAAAAGATGTTTCTCATAACAAA
EY893855       --> ......................cacATTAAAAGATGTTTCTCATAACAAA
EW727001       --> ......................................TCTCATAACAAA
FD528664       --> ..................................................

               101    -    151
UN23056        --> AACATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- -ACATAGGTT-CACACA-CTTTCAGGG--TAAACAAAA-GACA-AGA-CT  Raphanus raphanistrum subsp. maritimus
EY897574       <-- AACATAGGTTTCACACAACTTTCAGGGTTAACACAAAAAGACA-AGAACT  Raphanus raphanistrum subsp. maritimus
FD559886       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- ..................................................  Raphanus sativus var. oleiformis
EW722234       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- ..................................................  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> AACATAGGTTTCACACAACTTTCAGGGTTAAAAAAAAAAGACA-AGAACT  Raphanus sativus cv Early Scarlet Globe
EV532969       --> AACATAGGTTTCACACAACTTTCAGGGTTAACGCAAAAAGACA-AGAACT  Raphanus raphanistrum subsp. maritimus
EX769600       --> AACATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACAGAAAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> AACATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACAGAGAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> A-CATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> AACATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT  Raphanus raphanistrum subsp. landra
FD565976       --> A-CATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT  Raphanus sativus var. oleiformis
FD575030       --> A-CATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT  Raphanus sativus cv Early Scarlet Globe
FD935799       --> A-CATAGGTTTCACACAACTTTCAGGGTTAAAACAAAAAGACA-AGAACT  Raphanus sativus var. oleiformis
EY893855       --> AACATAGGTTTCACACAACTTTCAGGGTTAACACAAAAAGACA-AAAACT  Raphanus raphanistrum subsp. maritimus
EW727001       --> AACATAGGTTTCACACAACTTTCAGGGTTAAAAAAAAAAGACA-AGAACT  Raphanus sativus cv Early Scarlet Globe
FD528664       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN23056        --> TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAA--GCAAAGGGCTTCAA
EY897574       <-- TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> TGAGATGCTCAAAACGAAAAAAAGCAAGTTAAA---GCAAAGGGCTTCAA
EV532969       --> TGAGATGCTCAGAACGAAAAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
EX769600       --> TGAGATGCTCAGAACGAAGAAAAGCAAATTAAAAAAGCAAAGGGCTTCAA
EV544437       --> TGAGATGCTCAGAACGAAGAAAAGCAAATTAAAAAAGCAAAGGGCTTCAA
EY942652       --> TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
FD555523       --> TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
FD565976       --> TGAGATGCTCAAAACGAAAAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
FD575030       --> TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
FD935799       --> TGAGATGCTCAGAACGAAGAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
EY893855       --> TGAAATGCTCAAAACGAAAAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA
EW727001       --> TGAGATGCTCAAAACGAAAAAAAGCAAGTTAAA---GCAAAGGGCTTCAA
FD528664       --> ...............GAAAAAAAGCAAGTTAAAAA-GCAAAGGGCTTCAA

               201    -    251
UN23056        --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- GTAGGCT-CCTCATATTTCT-CCTGCACGAATCACTTCGTCCACCAAAAG
EY897574       <-- GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EV532969       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EX769600       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EV544437       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EY942652       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD555523       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD565976       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD575030       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD935799       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EY893855       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
EW727001       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG
FD528664       --> GTAGGCTTCCTCATATTTCTTCCTGCACGAATCACTTCGTCCACCAAAAG

               251    -    301
UN23056        --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EY897574       <-- CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
FD559886       <-- .....................................gctgcgTTCACTG
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGCTGGCGTTTCACTG
EV532969       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EX769600       --> CAACTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EV544437       --> CAACTGTGAGGCAATCCCTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EY942652       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
FD555523       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGCTGGCGTTTCACTG
FD565976       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
FD575030       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
FD935799       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EY893855       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG
EW727001       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGCTGGCGTTTCACTG
FD528664       --> CAGCTGTGAGGCAATCACTGGCCCTGAGTTGATAAGTTGGCGTTTCACTG

               301    -    351
UN23056        --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus raphanistrum subsp. maritimus
EY897574       <-- AGT...............................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCGATTG-TTC-CCGTCC  Raphanus raphanistrum subsp. landra
FD571153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- ..................................................  Raphanus sativus var. oleiformis
EW722234       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- ..................................................  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCGATTGGTTCCCCGTCC  Raphanus sativus cv Early Scarlet Globe
EV532969       --> AGTAATTGTCGAAAATACCAGCGAGCTGCGGGTCAATTGGTTCACAGTCC  Raphanus raphanistrum subsp. maritimus
EX769600       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCGATTGGTTCCCCGTCC  Raphanus raphanistrum subsp. landra
FD565976       --> AGTAATTGTCGAAAATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus sativus var. oleiformis
FD575030       --> AGTAATTGTCGAAAATACCAGCGAGCTGCGGGTCGATTGGTTCCCCGTCC  Raphanus sativus cv Early Scarlet Globe
FD935799       --> AGTAATTGTCGAAAATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus sativus var. oleiformis
EY893855       --> AGT...............................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> AGTAATTGTCGAAAATACCAGCGAGCTGCGGGTCGATTGGTTCCCCGTCC  Raphanus sativus cv Early Scarlet Globe
FD528664       --> AGTAATTGTCGAAGATACCAGCGAGCTGCGGGTCAATTGGTTCACCGTCC  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN23056        --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EY897574       <-- ..................................................
FD559886       <-- TCAATGTTCA-TCCCACTACGTT-CCTTTGTCATGCTCGCTCGT-AGAGA
FD571153       <-- ..AATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EV532969       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EX769600       --> TCAATGTTCAATCCAACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EV544437       --> TCAATGTTCAATCCAACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EY942652       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
FD555523       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
FD565976       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
FD575030       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
FD935799       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA
EY893855       --> ..................................................
EW727001       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAAAAA
FD528664       --> TCAATGTTCAATCCCACTACGTTTCCTTTGTCATGCTCGCTCGTTAGAGA

               401    -    451
UN23056        --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EY897574       <-- ..................................................
FD559886       <-- AATGATCACGTCTTGGGTGTCAAGAC-TGCGTTTTCTGCAAGTGTCTTGG
FD571153       <-- AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EV548834       <-- ..............................GTTTTCTGCAAGTGTCTTGG
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EV532969       --> AATGATCACGTCTTGGGTGTCAAGACCCGCGTTTTCTGCAAGTGTCTTGG
EX769600       --> GATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EV544437       --> GATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EY942652       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
FD555523       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
FD565976       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
FD575030       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
FD935799       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
EY893855       --> ..................................................
EW727001       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG
FD528664       --> AATGATCACGTCTTGGGTGTCAAGACCTGCGTTTTCTGCAAGTGTCTTGG

               451    -    501
UN23056        --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- GCACCACGAGAAGGGCATTAGCAAAAGCTTCTACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. landra
FD571153       <-- GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- ...........................................GGCACG-  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- ..................................................  Raphanus sativus var. oleiformis
EW722234       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- ..................................................  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus sativus cv Early Scarlet Globe
EV532969       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGTACG-  Raphanus raphanistrum subsp. maritimus
EX769600       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCTACGCCAAGTTGGGCACG-  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. landra
FD565976       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCTACGCCAAGTTGGGCACGT  Raphanus sativus var. oleiformis
FD575030       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus sativus cv Early Scarlet Globe
FD935799       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCTACGCCAAGTTGGGCACGT  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCAACGCCAAGTTGGGCACG-  Raphanus sativus cv Early Scarlet Globe
FD528664       --> GCACCACGAGAAGGGCATTAGCAAAAGCTTCTACGCCAAGTTGGGCACG-  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN23056        --> CCC-TT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- CCCCTT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- CCCCTT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCCGCA  Raphanus raphanistrum subsp. landra
FD571153       <-- CCCCTT-AACGGTTTTCTTGACTTTATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- CCC-TTGAACGGTTTTCTTGACTTCATTGAGTAAGTGTTGCCTTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- CCC-TT-AACGGTTT-CTTGACTTTATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- ...................GACTTCAT-GAGTAAGTGATGTCTTGCTGCA  Raphanus sativus var. oleiformis
EW722234       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- ..................................................  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> CCCCTT-AACGGTTTTCTTGACTTTATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Early Scarlet Globe
EV532969       --> CCC-TTGAACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus raphanistrum subsp. maritimus
EX769600       --> CCC-TTGAACGGTTTTCTTGACTTCATTGAGTAAGTGTTGCCTTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> CCC-TTGAACGGTTTTCTTGACTTCATTGAGTAAGTGTTGCCTTGCTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> CCCCTT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> CCCCTT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCCGCA  Raphanus raphanistrum subsp. landra
FD565976       --> CCC-TT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus var. oleiformis
FD575030       --> CCCCTT-AACGGTTTTCTTGACTTTATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Early Scarlet Globe
FD935799       --> CCC-TT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> CCCCTT-AACGGTTTTCTTGACTTTATTGAGTAAGTGATGTCTTGCTGCA  Raphanus sativus cv Early Scarlet Globe
FD528664       --> CCCCTT-AACGGTTTTCTTGACTTCATTGAGTAAGTGATGTCTTGCTGCA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN23056        --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EY897574       <-- ..................................................
FD559886       <-- ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
FD571153       <-- ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EV548834       <-- ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EW722233       <-- ACTTCAAAAGCTC-TGCTCCTAGCACAACACACCCGTCTTCTATGGTGTT
FD561954       <-- ACTTCAAAAGCTC-TGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EW722234       <-- ......................................TTCTATGGTGTT
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACCCGTCTTCTATGGTGTT
EV532969       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EX769600       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EV544437       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EY942652       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
FD555523       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
FD565976       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
FD575030       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
FD935799       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT
EY893855       --> ..................................................
EW727001       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACCCGTCTTCTATGGTGTT
FD528664       --> ACTTCAAAAGCTCCTGCTCCTAGCACAACACACTCGTCTTCTATGGTGTT

               601    -    651
UN23056        --> CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- CTTGACCGATCTTAGACCATCACGAGCCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. landra
FD571153       <-- CTTGACGGATCTCAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- CTTGACCGATCTTAGACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- CTTGACGGATCTCAAACCATCACGAACCGCATCTTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- CTTGACCGATCTTAAACCATCACGAACCGCATCTTTAATTTGAGCAATGG  Raphanus sativus var. oleiformis
EW722234       <-- CTTGACGGATCTCAAACCATCACGAACCGCATCTTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- .........TCTTAAACCATCACGAACCGCATCTTTA-TTTGAGCAATGG  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> CTTGACGGATCTCAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
EV532969       --> CTTGACCGATCTTAGACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. maritimus
EX769600       --> CTTGACCGATCTTAGACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> CTTGACCGATCTTAGACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> CTTGACCGATCTTAGACCATCACGAGCCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. landra
FD565976       --> CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus var. oleiformis
FD575030       --> CTTGACGGATCTCAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
FD935799       --> CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> CTTGACGGATCTCAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus sativus cv Early Scarlet Globe
FD528664       --> CTTGACCGATCTTAAACCATCACGAACCGCATCCTTAATTTGAGCAATGG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN23056        --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTGCACGAATTAGGGTTCTTA  Raphanus raphanistrum subsp. landra
FD571153       <-- TGCGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus sativus var. oleiformis
EW722234       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
EV532969       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus raphanistrum subsp. maritimus
EX769600       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTGCACGAA............  Raphanus raphanistrum subsp. landra
FD565976       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus sativus var. oleiformis
FD575030       --> TGCGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
FD935799       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTA  Raphanus sativus cv Early Scarlet Globe
FD528664       --> TGTGGTCATTAGGCCCTTTGATGAGGATGGTACACGAATTAGGGTTCTTC  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN23056        --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. landra
FD571153       <-- ACTTGCTCAACGAAGGTGTACTTT-CCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- ACTTGCTCAACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus var. oleiformis
EW722234       <-- ACTTGCTCAACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> ACTTGCTCAACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
EV532969       --> ACTTGCTCCACGAA....................................  Raphanus raphanistrum subsp. maritimus
EX769600       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565976       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus var. oleiformis
FD575030       --> ACTTGCTCAACGAAGGTGTACTTT-CCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
FD935799       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> ACTTGCTCAACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus sativus cv Early Scarlet Globe
FD528664       --> ACTTGCTCCACGAAGGTGTACTTTTCCTCTCCAAGAACGTGCTCATAGAC  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN23056        --> AAGTCCAGCCCATCCAAGCGACTCAGGGGGACAAGTCGTCAACAGAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- AAGTCCAGCCCATCCAAGCGACTCAGGGG-TCAAGTCGTCAACAGAATTC  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- AAGTCCAGCCCATCCAAGCGACCCAGGGG-TCAAGTCGTCAACAGAATTC  Raphanus raphanistrum subsp. landra
FD571153       <-- AAGTCCTGCCCATCCAAGCGACTCAGGGG-ACAAGTCGTCAACAGAATTC  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- AAGTCCAGCCCACCCAAGCGACTCAGGGG-ACAAGTCGTCAACAGAATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- AAGTCCTGCCCATCCAAGCGACTCAGGGG-ACAAGTCGTCAACAGAATTC  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- AAGTCCAGCCCATCCAAGCGACTCAGGGG-TCAAGTCGTCAACAGAATTC  Raphanus sativus var. oleiformis
EW722234       <-- AAGTCCTGCCCATCCAAGCGACTCAGGGGGACAAGTCGTCAACAGAATTC  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- AAGTCCAGCCCATCCAAGCGACTCAGGGG-TCAAGTCGTCAACAGAATTC  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> AAGTCCTGCCCATCCAAGCGAC............................  Raphanus sativus cv Early Scarlet Globe
EV532969       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX769600       --> AAGTCCAGCCCACCCAAGCGAC............................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> AAGTCCAGCCCACCCAAGCGACTCAGGGG-ACAAGTCGTCAACAGAATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> AAGTCCAGCCCATCCAAGCGACTCAGGGG-TCAAGTCGTCAACAGAATTC  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565976       --> AAGTCCAGCCCATCCAAGCGAC............................  Raphanus sativus var. oleiformis
FD575030       --> AAGTCCTGCCCATCCAAGCGAC............................  Raphanus sativus cv Early Scarlet Globe
FD935799       --> AAGTCCAGCCCATCCAAGCGACTCAGGG--TCAAGTCGTCAACAGAATTC  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> AAGTCCTGCCCATCCAAGCGAC............................  Raphanus sativus cv Early Scarlet Globe
FD528664       --> AAGTCCAGCCCATCCAAGCGAC............................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN23056        --> ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
EY897574       <-- ..................................................
FD559886       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
FD571153       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
EV548834       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTTCTTCTCTT
EW722233       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
FD561954       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
EW722234       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
FD939752       <-- ACAGCATCTCCACCACATGCCAAAACTAAACGTTCCATGTTCCTCCTCTT
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ACAGCATCTCCACCACATG...............................
EY942652       --> ACAGCATCTCCACCACATGC..............................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ACAGCATCTCCACCACATGCCAAA-CTAAACGTTCCATGTTCCTCCTCTT
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               851    -    901
UN23056        --> TGCTCTTCTAAGGG-CAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- TGCTCTTCGAAGGG-CAATAATCCCTTCTCTAGCAAGAATATCCAACGAT  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- GGCTCTTCTAAGGG-CAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT  Raphanus raphanistrum subsp. landra
FD571153       <-- TGCTCTTCTAAGGG-CAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- TGCTCTTCTAAGGG-CAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- TGCTCTTCTAAGGG-CAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- TGCTCTTCGAAGGG-CAATAATCCCTTCTCTAGCAAGAATATCCAACGAT  Raphanus sativus var. oleiformis
EW722234       <-- TGCTCTTCTAAGGGGCAATAATCCCTTCTCTAGCAAGAAGATCCAACGAT  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- TGCTCTTCGAAGGG-CAATAATCCCTTCTCTAGCAAGAATATCCAACGAT  Raphanus sativus var. oleiformis
EV529156       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX765888       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV532969       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX769600       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565976       --> ..................................................  Raphanus sativus var. oleiformis
FD575030       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935799       --> TGCTCTT...........................................  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD528664       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN23056        --> GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- Gc................................................
EY897574       <-- ..................................................
FD559886       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
FD571153       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
EV548834       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
EW722233       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
FD561954       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
EW722234       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
FD939752       <-- GGTGGGTCAATACCCTTTTGGTTGATGATAACAAAGTTGTTATCATTACC
EV529156       <-- ....................GTTGATGATAACAAAGTTGTTATCATTACC
EX765888       <-- ..................................................
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               951    -   1001
UN23056        --> AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
FD571153       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
EV548834       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
EW722233       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
FD561954       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
EW722234       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
FD939752       <-- AGCACACACCTTGTTCTTCAGATCGATAATTTTCTGAACTCTTTCATCAA
EV529156       <-- AGCACACAC-TTGTTCT-CAGATCGATAATTTTCTGAACTCTTTCATCAA
EX765888       <-- .............................aTTTCTGAACTCTT-CATCAA
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1001   -   1051
UN23056        --> CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTACTCCGCGTTAGAA
FD571153       <-- CAGATTTCCc........................................
EV548834       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
EW722233       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
FD561954       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
EW722234       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
FD939752       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
EV529156       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
EX765888       <-- CAGATTTCCTCTCGGCAGTAACCATGGCTTCCCTCTGCTCCGCATTAGAG
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1051   -   1101
UN23056        --> TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAc.........
FD571153       <-- ..................................................
EV548834       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
EW722233       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
FD561954       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
EW722234       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
FD939752       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
EV529156       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
EX765888       <-- TAGAAAAACCCTGCATTGATTTCACTCTTCTCATACTCCAGCGACACATT
EX902351       <-- ..................................................
EY946583       <-- ..................................................
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1101   -   1151
UN23056        --> GCAAGTTAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY897574       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD559886       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD571153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV548834       <-- GCAAGTTAGGATc.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722233       <-- GAAAGTTAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus cv Early Scarlet Globe
FD561954       <-- GCAAGTCAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus var. oleiformis
EW722234       <-- GAAAGTTAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus cv Early Scarlet Globe
FD939752       <-- GCAAGTCAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus var. oleiformis
EV529156       <-- GCAAGTCAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus raphanistrum subsp. maritimus
EX765888       <-- GCAAGTTAGGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX902351       <-- ........GGATGTGGCAATTCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus cv Rat-Tail Radish #3870
EY946583       <-- ....agtcaGATGTG-CAA-TCTCTGCGCGTCGTTTCATATCAGGGTGTC  Raphanus sativus cv Rat-Tail Radish #3870
EW727294       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV532969       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX769600       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV544437       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY942652       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD555523       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565976       --> ..................................................  Raphanus sativus var. oleiformis
FD575030       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935799       --> ..................................................  Raphanus sativus var. oleiformis
EY893855       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW727001       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD528664       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               1151   -   1201
UN23056        --> TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
FD561954       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
EW722234       <-- TCGAACCATGGTCTAGAACGAGCCCCTCGACCAATCGTGTGTCAACGTCG
FD939752       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
EV529156       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACATCA
EX765888       <-- TCGAACCATGGTCTAGAACAAGCCCCACGACCAATCGTGTGTCAACATCA
EX902351       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
EY946583       <-- TCGAACCATGGTCTAGAACAAGCCCCTCGACCAATCGTGTGTCAACGTCG
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1201   -   1251
UN23056        --> AACTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- AACTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
FD561954       <-- AACTTGCGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EW722234       <-- AACTTGTGGCGCATGTGCATTATCTCCACCATAAA...............
FD939752       <-- AACTTGCGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EV529156       <-- AATTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EX765888       <-- AATTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EX902351       <-- AACTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EY946583       <-- AACTTGTGGCGCATGTGCATTATCTCCACCATAAACAGATCAATGCCTTC
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1251   -   1301
UN23056        --> CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
FD561954       <-- CTCAGGCTTCCGGATACAGAGAACTGA-TTAACGACAATc..........
EW722234       <-- ..................................................
FD939752       <-- CTCAGGCTTCCGGATACAGAGAACTGA-TTAACGACAATc..........
EV529156       <-- CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
EX765888       <-- CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
EX902351       <-- CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
EY946583       <-- CTCAGGCTTCCGGATACAGAGAACTGAATTAACGACAATGTCAGTCAGTT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1301   -   1351
UN23056        --> GATCAGCCAAGCCTTCGTACAGCTTTGTTCTAAGTGTTGTTCTCGCCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- GATCAGCCAATCCTTCGTACAGC...........................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- GATCAGCCAAGCCTTCGTACAGCTTTGTTCTAAGTGTTGTTCTCGCCACC
EX765888       <-- GATCAGCCAATCCTTCGTACAGCTTTGTTCTAAGTGTTGTTCTCGCCACC
EX902351       <-- GATCAGCCAAGCCTTCGTACAACTTTGTTCTAAGCGTTGTTCTCGCCACC
EY946583       <-- GATCAGCCAAGCCTTCGTACAACTTTGTTCTAAGCGTTGTTCTCGCCACC
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1351   -   1401
UN23056        --> ATTTTTAGGATCTCTTTATCAGGTTCATCACCCATAACCACAGGAGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ATTTTTAGGATCTCTTTATCAGGTTCATCACCCATAACCACAGGAGTCTT
EX765888       <-- ATTTTTAGGGTCTCTTTATCAGGTTCATCACCCATGACCACAGGAGTCTT
EX902351       <-- ATTTTTAGGATCTCTTTATCAGGTTCATCACCCATAACCACAGGAGTCTT
EY946583       <-- ATTTTTAGGATCTCTTTATCAGGTTCATCACCCATAACCACAGGAGTCTT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1401   -   1451
UN23056        --> GAAGTTCTCGAGGAATTGAAGAGTAGCTCTTTTAGCAATTTCAAAACCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- GAAGTTCTCGAGGAATTGAAGAGTAGCTCTTTTAGCAATCTCAAAACCAT
EX765888       <-- GAAGTTGTCGAGGAATTGAAGAGTAGCTCTTTTAACAATCTCAAAACCAT
EX902351       <-- GAAGTTCTCGAGGAATTGAAGAGTAGCTCTTTTAGCAATTTCAAAACCAT
EY946583       <-- GAAGTTCTCGAGGAATTGAAGAGTAGCTCTTTTAGCAATTTCAAAACCAT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1451   -   1501
UN23056        --> CAACTAAGACACGTGGGTGCATTCCTTCATCAATGCAGCGTTCGGACTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- CAACTAAGACACGTGGGTGCATTCCTTCATCAATGCAGCGTTCGGACTGT
EX765888       <-- CAACTAAGACACGTGGGTGCATTCCTTCATCAATGCAGCGTTCGGACTGT
EX902351       <-- CAACTAAGACACGTGGGTGCATTCCTTCATCAATGCAGCGTTCGGACTGT
EY946583       <-- CAACTAAGACACGTGGGTGCATTCCTTCATCAATGCAGCGTTCGGACTGT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1501   -   1551
UN23056        --> TTCATGAGCTCACCAATGAAGATGACAGTGGAAGTAGTACCATCGCCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- TTCATGAGCTCACCAATGAAGATGACAGTGGAAGTAGTACCATCGCCACT
EX765888       <-- TTCATGAGCTCACCAATGAAAATGACAGTGGAAGTAGTACCATCGCCACT
EX902351       <-- TTCATGAGCTCACCAATGAAGATGACAGTGGAAGTAGTACCATCGCCACT
EY946583       <-- TTCATGAGCTCACCAATGAAGATGACAGTGGAAGTAGTACCATCGCCACT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1551   -   1601
UN23056        --> TATGTCATCCTGTGCAACAGCAGTCCTTGCAATCATAATAGCCGTCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- TATGTCATCCTGTGCAACAGCCGTCCTCGCAATCATAATAGCCGTCGGAT
EX765888       <-- TATGTCATCCTGTGCAACAGCAGTCCTTGCAATCATAATAGCCGTCGGA.
EX902351       <-- TATGTCATCCTGTGCAACAGCAGTCCTTGCAATCATAATAGCCGTCGGAT
EY946583       <-- TATGTCATCCTGTGCAACAGCAGTCCTTGCAATCATAATAGCCGTCGGAT
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1601   -   1651
UN23056        --> TCTGAATTTGCATTTCCTTCAATAGCGTGTTCCCATCCTTGGTTAGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- TCTGAATTTGCATTTCCTTCAATAGCGTGTTCCCATCCTTGGTTAGCTTA
EX765888       <-- ..................................................
EX902351       <-- TCTGAATTTGCATTTCCTTCAATAGCGTGTTCCCATCCTTGGTTAGCTTA
EY946583       <-- TCTGAATTTGCATTTCCTTCAATAGCGTGTTCCCATCCTTGGTTAGCTTA
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1651   -   1701
UN23056        --> ATATCTCCCGAACCACCAACAAGCATCTTGATGGTTCCCTTAGGGCCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ATATCTCCCGAACCACCAACAAGCATCTTGATGGTTCCC...........
EX765888       <-- ..................................................
EX902351       <-- ATATCTCCCGAACCACCAACAAGCATCTTGATGGTTCCCTTAGGGCCGAG
EY946583       <-- ATATCTCCCGAACCACCAACAAGCATCTTGATGGTTCCCTTAGGGCCGAG
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1701   -   1751
UN23056        --> ATTGGACTTGAGTACATCCTGCAAACCCTTGGCGGCGTTGATGGTCATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ATTGGACTTGAGTACATCCTGCAAACCCTTGGCGGCGTTGATGATCATAT
EY946583       <-- ATTGGACTTGAGTACATCCTGCAAACCCTTGGCGGCGTTGATGGTCATAC
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1751   -   1801
UN23056        --> GAAGCGCCGCCGTTTTGTTGAGCACCTCCGCATTAGGGTTTAGAACACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- GAAGCGCCGCCGTTTTGTTGAGCACCTCCGCATTAGGGTTTAGAACACGC
EY946583       <-- GAAGCGCCGCCGTTTTGTTGAGCACCTCCGCATTAGGGTTTAGAACACGC
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1801   -   1851
UN23056        --> ACTGACATTTTTCCGAAAAGTTTTAAGTTGTTCGTTCGTACGGGATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..................................................
EY897574       <-- ..................................................
FD559886       <-- ..................................................
FD571153       <-- ..................................................
EV548834       <-- ..................................................
EW722233       <-- ..................................................
FD561954       <-- ..................................................
EW722234       <-- ..................................................
FD939752       <-- ..................................................
EV529156       <-- ..................................................
EX765888       <-- ..................................................
EX902351       <-- ACTGACATTTTTCCGAAAAGTTTTAAGTTGTTCGTTCGTACGGGATCTGA
EY946583       <-- ACTGACATTTTTCCGAAAAGTTTTAAGTTGTTCGTTCGTACGGGATCTGA
EW727294       --> ..................................................
EV532969       --> ..................................................
EX769600       --> ..................................................
EV544437       --> ..................................................
EY942652       --> ..................................................
FD555523       --> ..................................................
FD565976       --> ..................................................
FD575030       --> ..................................................
FD935799       --> ..................................................
EY893855       --> ..................................................
EW727001       --> ..................................................
FD528664       --> ..................................................

               1851   -   1901
UN23056        --> CCAGGAAGAGAAGAGCTGGAGTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532108       <-- ..........................
EY897574       <-- ..........................
FD559886       <-- ..........................
FD571153       <-- ..........................
EV548834       <-- ..........................
EW722233       <-- ..........................
FD561954       <-- ..........................
EW722234       <-- ..........................
FD939752       <-- ..........................
EV529156       <-- ..........................
EX765888       <-- ..........................
EX902351       <-- CCAGGAAGAGAAGAGCTGGAGTGTCC
EY946583       <-- CCAGGAAGAGAAGAGCTGGAGTGTCC
EW727294       --> ..........................
EV532969       --> ..........................
EX769600       --> ..........................
EV544437       --> ..........................
EY942652       --> ..........................
FD555523       --> ..........................
FD565976       --> ..........................
FD575030       --> ..........................
FD935799       --> ..........................
EY893855       --> ..........................
EW727001       --> ..........................
FD528664       --> ..........................