RadishBase

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Alignment for radish unigene UN23108

               1      -     51
UN23108        --> GCATCGATGAGCGGACTTACCATTTCAACTCGTTGCTCCTGAACTTAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> GCATCGATGAGCGGACTTACCATTTCAACTCGTTGCTCCTGAACTTAGGA
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               51     -    101
UN23108        --> AACACATTCTTGTACATGGTCAACACATATATCATTGTCCCTACAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> AACACATTCTTGTACATGGTCAACACATATATCATTGTCCCTACAGCAGA
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               101    -    151
UN23108        --> TGACTATTCCATGAGCCTTGGAGCTGCTGCAACGGTTTGTGGTATCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> TGACTATTCCATGAGCCTTGGAGCTGCTGCAACGGTTTGTGGTATCGTCA
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               151    -    201
UN23108        --> TTGGATCTATGGCCGTGGCTCAAGTTTTCTCCTCGGTTTATTTCAGCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> TTGGATCTATGGCCGTGGCTCAAGTTTTCTCCTCGGTTTATTTCAGCGCC
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               201    -    251
UN23108        --> TGGTCCAACAAGTCTTACTTCAAACCTCTTGTGTTCAGCAGCATTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> TGGTCCAACAAGTCTTACTTCAAACCTCTTGTGTTCAGCAGCATTGCTCT
EY931846       --> ...ggCAACAAGTCTTACTTCAAACCTCTTGTGTTCAGCAGCATTGCTCT
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               251    -    301
UN23108        --> CTTTATAGGGAACCTAATGTATGCGTTGGCTTATGATGCCAGTTCCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> CTTTATAGGGAACCTAATGTACGCGTTGGCTTATGATGCCAATTCCATGT
EY931846       --> CTTTATAGGGAACCTAATGTATGCGTTGGCTTATGATGCCAGTTCCATGT
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               301    -    351
UN23108        --> GGCTTCTCTTACTCGGCCGTCTCTGTTGTGGGCTGGGATCAGCAAGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> GGCTTCTCTTACTCGGCCGTCTCTGTTGTGGGCTGGGATCAGCAAGAGCT
EY931846       --> GGCTTCTCTTACTCGGCCGTCTCTGTTGTGGGCTGGGATCAGCAAGAGCT
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               351    -    401
UN23108        --> GTGAACAGGAGATACATCAGTGATTGTGTTCCTTTAAGAATCCGAATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> GTGAACAGGAGATACATCAGCGATTGTGTGCCTTTAAGAATCCGAATGCA
EY931846       --> GTGAACAGAAGATACATCAGTGATTGTGTTCCTTTAAGAATCAGAATGCA
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               401    -    451
UN23108        --> GGCGTCAGCAGGTTTTGTGAGTGCTAGTGCTCTTGGAATGGCTTGTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> GGCGTCAGCAGGTTTTGTGAGTGCTAGTGCTCTTGGAATGGCTTGTGGTC
EY931846       --> GGCGTCAGCAGGTTTTGTGAGTGCTAGTGCTCTTGGAATGGCTTGTGGTC
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               451    -    501
UN23108        --> CTGCACTCGCTGGTTTGCTCCAAATCAAATTCAAGATCTACAAGCTGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> CTGCACTCGCCGGTTTGCTCCAAATCAAATTCAAGATCTACAAGCTGACA
EY931846       --> CTGCACTCGCTGGTTTGCTCCAAATCAAATTCAAGATCTACAAGCTGACA
EV549951       --> ..............................gCAAGATCTACAAGCTGACA
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               501    -    551
UN23108        --> TTTAACCAGTCTACTTTGCCTGGGTGGGTTATGGCTGTGGCTTGGCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> TTTAACCAGTCTACTTTGCCTGGGTGGGTTATGGCTGTGGCTTGGCTGTT
EY931846       --> TTTAACCAGTCTACTTTGCCTGGGTGGGTTATGGCTGTGGCTTGGCTGTT
EV549951       --> TTTAACCAGTCCACTTTGCCTGGGTGGGTTATGGCTGTGGCTTGGCTGTT
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               551    -    601
UN23108        --> CTATTTGGTATGGCTATGCATTTCATTCAAGGAGCCGTTGCGTGATACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> CTATCTGGTATGGCTATGCATTTCATTCAAGGAGCCGTTGCGTGATACAG
EY931846       --> CTATTTGGTATGGCTGTGCATTTCATTCAAGGAGCCGTTGCGTGATACAG
EV549951       --> CTATTTGGTATGGCTATGCATTTCATTCAAGGAGCCGTTGCGTGATACAG
FD966064       --> .....gGGTATGGCTATGCATTTCATTCAAGGAGCCGTTGCGTGATACAG
FD543979       --> .............................................gACAG
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               601    -    651
UN23108        --> AGGATCAAGAAAGAAGCAACCCGAATGAAACAACTTCAGTGACAGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> AGGATCAAGAAAGGAGCAATCCGAATGAAACAACTTCAGCGACAGAGAGA
EY931846       --> AGGATCAAGAAAGAAGCAACCCGAATGAAACAACTTCAGTGACAGAGAGA
EV549951       --> AGGATCAAGAAAGAAGCAACCCGAATGAAACAACTTCAGTGACAGAGAGA
FD966064       --> AGGATCAAGAAAGAAGCAATCCGAATGAAACAACTTCAGCGACAGAGAGA
FD543979       --> AGGATCAAGAAAGAAGCAACCCGAATGAAACAACTTCAGTGACAGAGAGA
FD576887       --> ....TCAAGAAAGAAGCAACCCGAATGAAACAACTTCAGTGACAGAGAGA
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               651    -    701
UN23108        --> GAAGAGAATAGTAGAGTCGTGGAGGAAGGTCTTCGAAAGCCGTTGCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- .....................GAGGAAGGTCTTCGGAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- .............................TCTTCGAAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- ............................................GCTGAT  Raphanus sativus var. oleiformis
FD961628       <-- ............................................GCTGAT  Raphanus raphanistrum subsp. maritimus
EX908883       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD581292       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> GAAGAGAATAGTAGAGTCGTGGAGGAAAGTCTTCGAAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. maritimus
EY931846       --> GAAGACAATAGTAGAGTCGTGGAGGAAGGTCTTCGAAAGCCGTTGCTGAT  Raphanus sativus var. oleiformis
EV549951       --> GAAGAGAATAGTAGAGCCGTGGAGGAAGGTCTTCGAAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> GAAGAGAATAGTAGAGTCGTGGAGGAAGGTCTTCGAAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. maritimus
FD543979       --> GAAGAGAATAGTAGAGCCGTGGAGGAAGGTCTTCGGAAGCCGTTGCTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> GAAGAGAATAGTAGAGCCGTGGAGGAAGGTCTTCGGAAGCCGTTGCTGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> ..................................................  Raphanus sativus var. oleiformis
EV569766       --> ..................................................  Raphanus raphanistrum subsp. landra
FD563816       --> ..................................................  Raphanus sativus var. oleiformis

               701    -    751
UN23108        --> TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
EV545324       <-- TACTTCAGGACTCAAGGTGGAAGGCGA---AGATGAAGAGGATTGCGATG
EY927702       <-- TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
FD961628       <-- -ACTTCAGGACTCAAGCTCGAAGACGACGAAGATGAAGAGGATTGCGATG
EX908883       <-- ..................................................
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> TACTTCACGACTCAAGCTCGAAGACGACGAAGATGAAGAGGATTGCGATG
EY931846       --> TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
EV549951       --> TACTTCAGGACTCAAGGTGGAAGGCGA---AGATGAAGAGGATTGCGATG
FD966064       --> TACTTCAGGACTCAAGCTCGAAGACGACGAAGATGAAGAGGATTGCGATG
FD543979       --> TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
FD576887       --> TACTTCAGGACTCAAGGTGGAAGACGA---AGATGAAGAGGATTGCGATG
EX889713       --> .................gGGAAGACGA---AGATGAAGAGGATTGCGATG
EV569766       --> ..................................................
FD563816       --> ..................................................

               751    -    801
UN23108        --> AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACC-GCAAATTCTTTCGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- AAAGTGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus sativus var. oleiformis
FD961628       <-- AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus raphanistrum subsp. maritimus
EX908883       <-- .....................................AAATTCTTTCGGT  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD581292       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCG-T  Raphanus raphanistrum subsp. maritimus
EY931846       --> AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus sativus var. oleiformis
EV549951       --> AAAGTGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus raphanistrum subsp. maritimus
FD543979       --> AAAGCGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> AAAGTGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> AAAGTGAAGAGTCTGCAGAAGATTCTCGCAGACCTGCAAATTCTTTCGGT  Raphanus sativus var. oleiformis
EV569766       --> ..................................................  Raphanus raphanistrum subsp. landra
FD563816       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN23108        --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
EV545324       <-- GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
EY927702       <-- GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
FD961628       <-- GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCGACTGTTGATCTA
EX908883       <-- GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> GATGCATACCGACTTCTTACTCCA..........................
EY931846       --> GATGCATACCGACTTCTTACTCCATCTGTTAAG-TTCAACTGTTGATCTA
EV549951       --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
FD966064       --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCGACTGTTGATCTA
FD543979       --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
FD576887       --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGATCTA
EX889713       --> GATGCATACCGACTTCTTACTCCATCTGTTAAGGTTCAACTGTTGGTCTA
EV569766       --> ..................................................
FD563816       --> ..................................................

               851    -    901
UN23108        --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- CTTCATGCTCAAATACGCCATGGAGATATTACTGTCTGAATCTAGCGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- CTTCATGCTCAAATACGCCATGGAGATATTACTGTCTGAATCTAGTGTGG  Raphanus sativus var. oleiformis
FD961628       <-- CTTCATGCTCAAATACGCCATGGAGATATTAATGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. maritimus
EX908883       <-- CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- ......GCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. landra
FD581292       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCTGAATCTAGTGTGG  Raphanus sativus var. oleiformis
EV549951       --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> CTTCATGCTCAAATACGCCATGGAGATATTAATGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. maritimus
FD543979       --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCTGAATCTAGCGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> CTTCATGCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus sativus var. oleiformis
EV569766       --> ......GCTCAAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus raphanistrum subsp. landra
FD563816       --> ........ggtAATACGCCATGGAGATATTACTGTCGGAGTCTAGTGTGG  Raphanus sativus var. oleiformis

               901    -    951
UN23108        --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCCATCTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCTATCTTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- TTACTTCATACTATTTTGGTTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus sativus var. oleiformis
FD961628       <-- TTACTTCATACTATTTTGGCTGGACAACAAGCTCAGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. maritimus
EX908883       <-- TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- TTACTTCATACTATTTTGGCTGGACAACAAGCTCAGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. landra
FD581292       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> TTACTTCATACTATTTTGGTTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus sativus var. oleiformis
EV549951       --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCTATCTTTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCAGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. maritimus
FD543979       --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCCGTTGCCATCTTTCTG  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> TTACTTCATACTATTTTGGTTGGACAACAAGCTCCGTTGCCATCTTCCTC  Raphanus sativus var. oleiformis
EV569766       --> TTACTTCATACTATTTTGGCTGGACAACAAGCTCAGTTGCCATCTTTCTG  Raphanus raphanistrum subsp. landra
FD563816       --> TTACTTCATACTATTTTGGTTGGACAACAAGCTCCGTTGCCATCTTCCTC  Raphanus sativus var. oleiformis

               951    -   1001
UN23108        --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
EV545324       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
EY927702       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD961628       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
EX908883       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
EV574228       <-- GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD581292       <-- .....CCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD567462       <-- ..................................................
EV527659       --> ..................................................
EY931846       --> GC-TGCCTTGGCCTCACGGTGCTAC-AATCAACATTCTTGTGGGA.....
EV549951       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD966064       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD543979       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD576887       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
EX889713       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTTGGAAGTTA
EV569766       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTGGGAAGTTA
FD563816       --> GCCTGCCTTGGCCTCACGGTGCTACCAATCAACATTCTTGTTGGAAGTTA

               1001   -   1051
UN23108        --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
EV545324       <-- CATCAGTAACATGTTTTAAGACAGGCAAATCCTTTTGACATCTGAGATCA
EY927702       <-- CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD961628       <-- CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
EX908883       <-- CATCAGTAACATGTTTGAAGACAGGCAAATACTTTTGACATCTGAGATCA
EV574228       <-- CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD581292       <-- CATCAGTAACATGTTTGAAGACAGGCAAATACTTTTGACATCTGAGATCA
FD567462       <-- ..................................................
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> CATCAGTAACATGTTTTAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD966064       --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD543979       --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD576887       --> CATCAGTAACATGTTTGAAGACAGGCAAATACTTTTGACATCTGAGATCA
EX889713       --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
EV569766       --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA
FD563816       --> CATCAGTAACATGTTTGAAGACAGGCAAATCCTTTTGACATCTGAGATCA

               1051   -   1101
UN23108        --> TCGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TCGTCTTTATCGGGATCCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- TAGTCTTTATTGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- TCGCCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACG  Raphanus sativus var. oleiformis
FD961628       <-- TCGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. maritimus
EX908883       <-- TCGTCTTTATCGGGATCCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- TCGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACG  Raphanus raphanistrum subsp. landra
FD581292       <-- TCGTCTTTATCGGGATCCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> ..................................................  Raphanus sativus var. oleiformis
EV549951       --> TAGTCTTTATTGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> TCGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. maritimus
FD543979       --> TCGTCTTTATCGGGATCCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> TCGTCTTTATCGGGATCCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> TAGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus sativus var. oleiformis
EV569766       --> TCGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACG  Raphanus raphanistrum subsp. landra
FD563816       --> TAGTCTTTATCGGGATTCTCTTCAGTTTTAATCTGTTTGTTCCATACACC  Raphanus sativus var. oleiformis

               1101   -   1151
UN23108        --> GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- GTACCGCAATACGTGATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus sativus var. oleiformis
FD961628       <-- GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. maritimus
EX908883       <-- GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- TTACCGCAATACGTGATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. landra
FD581292       <-- GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- ..................................................  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> ..................................................  Raphanus sativus var. oleiformis
EV549951       --> GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. maritimus
FD543979       --> GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> GTACCTCAATACGTAATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus sativus var. oleiformis
EV569766       --> TTACCGCAATACGTGATCTCTGGTCTAGTAATGTTCGTCGCTGCTGAAGT  Raphanus raphanistrum subsp. landra
FD563816       --> GTGCCTCAATACGTAATCTCTGGTCTAGTAATGTTTGTCGCTGCTGAAGT  Raphanus sativus var. oleiformis

               1151   -   1201
UN23108        --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EV545324       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EY927702       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD961628       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EX908883       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EV574228       <-- ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD581292       <-- ACTCGAAGGTGTGAACCTGTCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD567462       <-- .....AAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ACTCGAAAGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD966064       --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAG-C
FD543979       --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD576887       --> ACTCGAAGGTGTGAACCTGTCGTTGTTATCGAGGGTAATGTCATCGAGGC
EX889713       --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
EV569766       --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC
FD563816       --> ACTCGAAGGTGTGAACCTATCGTTGTTATCGAGGGTAATGTCATCGAGGC

               1201   -   1251
UN23108        --> TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TATCAAAAGGAACTTACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- TCTCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus var. oleiformis
FD961628       <-- TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus raphanistrum subsp. maritimus
EX908883       <-- TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- TATCAAAAGGAACTTACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus raphanistrum subsp. landra
FD581292       <-- TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> ..................................................  Raphanus sativus var. oleiformis
EV549951       --> TCTCA.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> TATC..............................................  Raphanus raphanistrum subsp. maritimus
FD543979       --> TATCAAAAGGAACTTACAAC..............................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus var. oleiformis
EV569766       --> TATCAAAAGGAACTTACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus raphanistrum subsp. landra
FD563816       --> TATCAAAAGGAACATACAACGGAGGATTGCTGTCGACGGAAGCTGGAACG  Raphanus sativus var. oleiformis

               1251   -   1301
UN23108        --> TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGGTACTTGGG
EV545324       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
EY927702       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGAG
FD961628       <-- TTGGCTAGGGTTGTGGCAGATGCAACCATAACATTGGGAGGATACTTGGG
EX908883       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
EV574228       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
FD581292       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
FD567462       <-- TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
EX889713       --> TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
EV569766       --> TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG
FD563816       --> TTGGCTAGGGTTGTGGCGGATGCAACCATAACATTGGGAGGATACTTGGG

               1301   -   1351
UN23108        --> AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
EV545324       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATTTGCA
EY927702       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
FD961628       <-- AAGAAACCACCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
EX908883       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
EV574228       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
FD581292       <-- AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
FD567462       <-- AAGAAACCATTTTTTGAATGCAACTTTTTTACCATCACTTGTCATTTGCA
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
EX889713       --> AAGAAACCATCTCTTGAATACAACTCTTCTACCATCACTTGTCATCTGCA
EV569766       --> AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCG
FD563816       --> AAGAAACCATCTCTTGAATGCAACTCTTCTACCATCACTTGTCATCTGCA

               1351   -   1401
UN23108        --> TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTATTGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- TTGGCTCCATTGTTGCTACTTGCTGTACTTATAACTCTCTCTATTGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV545324       <-- TTGGCTCCATCGTTGCTACTTGCTGTACTTATAACTCTCTCTATTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY927702       <-- TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTATTGATAT  Raphanus sativus var. oleiformis
FD961628       <-- TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACCCTCTCTATTGATAT  Raphanus raphanistrum subsp. maritimus
EX908883       <-- TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTACTGATAT  Raphanus sativus cv Rat-Tail Radish #3870
EV574228       <-- TTGGCTCCATTGTTGCTACTTGCTGTACTTATAACTCTCTCTATTGATAT  Raphanus raphanistrum subsp. landra
FD581292       <-- TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTACTGATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD567462       <-- TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTTTATTGATAT  Raphanus sativus var. oleiformis
EV527659       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY931846       --> ..................................................  Raphanus sativus var. oleiformis
EV549951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD966064       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD543979       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD576887       --> TTGGCTCCATTGTTG...................................  Raphanus sativus cv Rat-Tail Radish #3870
EX889713       --> TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTATTGATAT  Raphanus sativus var. oleiformis
EV569766       --> TTGGCTCCATTGTTGCTACTTGCTGTACTTATAACTCTCTCTATTGATAT  Raphanus raphanistrum subsp. landra
FD563816       --> TTGGCTCCATTGTTGCTACTTGTTGTACTTATAACTCTCTCTATTGATAT  Raphanus sativus var. oleiformis

               1401   -   1451
UN23108        --> GTTTTTAAGAGATTTT-GCTACCAAATTTTACAAAA-TAGAATAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAATA-TAGAATAAAAAAA
EV545324       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAAAA-TAGAATAAAAAA-
EY927702       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAAAAATAGAATAAAAAAA
FD961628       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAAAAATAGAATAAAAAAA
EX908883       <-- GTTTTTAAGAGATTTTTGCTACCAAATTTTACAAAA-TAGAATAAAAAAA
EV574228       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAATA-TAGAATAAAAAAA
FD581292       <-- GTTTTTAAGAGATTTTTGCTACCAAATTTTACAAAA-TAGAATAAAAAAA
FD567462       <-- GTTTTTAAGAGATTTT-GCTACCAAATTTTACAATA-TAGAATAAAAAAA
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> GTTTTTA-GAGATTTT-GCTACCAAATTTTACA-TA-TAGAATAA.....
EV569766       --> GTTTTTAAGAGATTTT-GCTACCAAATTTTACAATA-TAGAATAAAAAAA
FD563816       --> GTTTTTAAGAGATTTT-GCTACCAAATTTTACAA................

               1451   -   1501
UN23108        --> GGGACAGTGTGTGTGTATGATCCTCTCTTTATTTGATTAT--TTGTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- GGGACAGTGTGTGTGTATGATCCTCTCTTTATTTGATTAT--TTGTGATC
EV545324       <-- GGGACAGTGTGTGT....................................
EY927702       <-- GGGACAGTGTGTGTGT..................................
FD961628       <-- GGGACAGTGTGTGTGTATGATCCTCTCTTTATTTGATTATATTTGTGATC
EX908883       <-- GGGACAGTGTGTG--TATGATCCTCTCTTTATTTGATTATATTTGTGATC
EV574228       <-- GGGACAGTGTGTGTGTATGATCCTCTCTTTATTTGATTAT--TTGTGATC
FD581292       <-- GGGACAGTGTGTGTt...................................
FD567462       <-- GGGACAGTGTGTGT....................................
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> GGGACAGTGTGTGTGTATGATCCTCTCTTTATTTGATTAT--TTGTGATC
FD563816       --> ..................................................

               1501   -   1551
UN23108        --> ATCTACTATGTGATGGTTTAGAAGTTTGTGTTTCAGTTCTTCGAACTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ATCTAC............................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ATCTACTATGTGATGGTTgag.............................
EX908883       <-- ATCTACTATGTGATGGTTGAGAAGTTTGTGTTTCAGTTCTTCGAACTATA
EV574228       <-- ATCTACTATGTGATGGTTTAGAAGTTT.......................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ATCTACTATGTGATGGTTTAGAAGTTT.......................
FD563816       --> ..................................................

               1551   -   1601
UN23108        --> CTGTCTACAATGTCTTAGTTGCAAATTTTGTTCATTAACCCATTGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539688       <-- ..................................................
EV545324       <-- ..................................................
EY927702       <-- ..................................................
FD961628       <-- ..................................................
EX908883       <-- CTGTCTACAATGTCTTAGTTGCAAATTTTGTTCATTAACCCATTGAGAAC
EV574228       <-- ..................................................
FD581292       <-- ..................................................
FD567462       <-- ..................................................
EV527659       --> ..................................................
EY931846       --> ..................................................
EV549951       --> ..................................................
FD966064       --> ..................................................
FD543979       --> ..................................................
FD576887       --> ..................................................
EX889713       --> ..................................................
EV569766       --> ..................................................
FD563816       --> ..................................................

               1601   -   1651
UN23108        --> C
                   ~
FD539688       <-- .
EV545324       <-- .
EY927702       <-- .
FD961628       <-- .
EX908883       <-- C
EV574228       <-- .
FD581292       <-- .
FD567462       <-- .
EV527659       --> .
EY931846       --> .
EV549951       --> .
FD966064       --> .
FD543979       --> .
FD576887       --> .
EX889713       --> .
EV569766       --> .
FD563816       --> .