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Alignment for radish unigene UN23116

               1      -     51
UN23116        --> GGGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX775500       <-- .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX892464       <-- .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EY910707       <-- .GGATCAATCAAAAACAAAAA-CATTCAATAATAAATAAATATATCGTTT
FD582510       <-- .GGATCAATCAGAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD567289       <-- gtGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD935125       <-- gtGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX775341       <-- .............................................ttttt
FD982936       <-- ..................................................
EY931303       --> GGGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD986742       --> GGGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX771274       --> .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX771463       --> .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EX888552       --> .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EY914712       --> .GGATCAATCAAAAACAAAAA-CATTCAATAATAAATAAATATATCGTTT
EY914932       --> .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EY916633       --> .GGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD578336       --> .GGATCAATCAGAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
EW733817       --> ..GATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD938864       --> gtGATCAATCAAAAACAAAAAACATTCAATAATAAATAAATATATCGTTT
FD578833       --> ..............................................tTTT
FY438248       --> ..................................................
FY437342       --> ..................................................

               51     -    101
UN23116        --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- T-AAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
EX775500       <-- TAAAAAAAAAAATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
EX892464       <-- TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
EY910707       <-- TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- TTAAAAAAAAAATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- TTAAAAAA--A-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
FD935125       <-- TTAAAAAA--A-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
EX775341       <-- aaAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
FD982936       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931303       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
FD986742       --> TAAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
EX771274       --> TAAAAAAAAAAATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
EX771463       --> TAAAAAAAAAAATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. landra
EX888552       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
EY914712       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> TTAAAAAAAAAATGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> TTAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> TTAAAAAAA---TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus var. oleiformis
FD578833       --> TAAAAAAAAAA-TGGCAGACAACAAGCAGAGCTTCCAAGCCGGTCAAGCC  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> ........AAA-TGGCAGA-AACAAGCAGAGCTTCCA-GCCGGTCAAGCC  Raphanus sativus cv GSK3-1
FY437342       --> .........................GCAGAGCTTC-AAGCCGGTCAAGCC  Raphanus sativus cv GSK3-1

               101    -    151
UN23116        --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
EX775500       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
EX892464       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
EY910707       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
FD935125       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
EX775341       <-- GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
FD982936       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931303       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
FD986742       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
EX771274       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
EX771463       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATTAAGGT  Raphanus raphanistrum subsp. landra
EX888552       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
EY914712       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus var. oleiformis
FD578833       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv GSK3-1
FY437342       --> GCTGGTCGTGCTGAGGAGAAGACTAATGTGCTGGTGGACAAGATCAAGGT  Raphanus sativus cv GSK3-1

               151    -    201
UN23116        --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX775500       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX892464       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EY910707       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD582510       <-- TGCTGCTACCTCAGCTGGAGCTTTTGCGCAAACCACGGGGCAGAAGATAA
FD567289       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD935125       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX775341       <-- TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD982936       <-- ............................CAAACCGCGGGGCAGAAGATAA
EY931303       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD986742       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX771274       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX771463       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EX888552       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EY914712       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EY914932       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
EY916633       --> TGCTGCTACCTCAGCTGGAGCTTCT.........................
FD578336       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCACGGGGCAGAAGATAA
EW733817       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD938864       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FD578833       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCACGGGGCAGAAGATAA
FY438248       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA
FY437342       --> TGCTGCTACCTCAGCTGGAGCTTCTGCGCAAACCGCGGGGCAGAAGATAA

               201    -    251
UN23116        --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX775500       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX892464       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EY910707       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD582510       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTAAAGGAGAAGACCGGCATG
FD567289       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD935125       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX775341       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD982936       <-- CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EY931303       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD986742       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX771274       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX771463       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EX888552       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EY914712       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
EY914932       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGACAAGACCGGCATG
EY916633       --> ..................................................
FD578336       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTAAAGGAGAAGACCGGCATG
EW733817       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD938864       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FD578833       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTAAAGGAGAAGACCGGCATG
FY438248       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG
FY437342       --> CAGAGGCTGCAGGAGGCGCTGTTAATCTTGTGAAGGAGAAGACCGGCATG

               251    -    301
UN23116        --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
EX775500       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTGTAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
EX892464       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
EY910707       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
FD935125       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
EX775341       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTGTAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
FD982936       <-- AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
EY931303       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
FD986742       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
EX771274       --> AAGAA-TA-CCCATTCGAGCATAAAACTGGGA..................  Raphanus raphanistrum subsp. landra
EX771463       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTGTAGTATCCCTTTTT  Raphanus raphanistrum subsp. landra
EX888552       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
EY914712       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> AAGAA-TA-CCCATTCGAGCATAAAACTGGGA-TTATAGTATCCCTTTT-  Raphanus sativus var. oleiformis
FD578833       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTT-  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTTT  Raphanus sativus cv GSK3-1
FY437342       --> AAGAAGTAGCCCATTCGAGCATAAAACTGGGAGTTATAGTATCCCTTTTT  Raphanus sativus cv GSK3-1

               301    -    351
UN23116        --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus raphanistrum subsp. landra
EX775500       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus raphanistrum subsp. landra
EX892464       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus var. oleiformis
EY910707       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAATTTGGGTGTTCTAATTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus var. oleiformis
FD935125       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus var. oleiformis
EX775341       <-- AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus raphanistrum subsp. landra
FD982936       <-- AAAAAAATTAATCGTTGTGG..............................  Raphanus raphanistrum subsp. landra
EY931303       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus var. oleiformis
FD986742       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus raphanistrum subsp. landra
EX771274       --> ..................................................  Raphanus raphanistrum subsp. landra
EX771463       --> AAAAAAATTAATCGTTGTGGTTT-AAATAAAAATTGGGTGTTCTAATTAA  Raphanus raphanistrum subsp. landra
EX888552       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus var. oleiformis
EY914712       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAATTTGGGTGTTCTAATTAA  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTGA  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> AAAAAA-TTAATC-TTGTGGTTT-AAATAAAAA.................  Raphanus sativus var. oleiformis
FD578833       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAATTTGGGTGTTCTAATTAA  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus sativus cv GSK3-1
FY437342       --> AAAAAAATTAATCGTTGTGGTTTTAAATAAAAATTGGGTGTTCTAATTAA  Raphanus sativus cv GSK3-1

               351    -    401
UN23116        --> TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EX775500       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EX892464       <-- TTCTCATCTTCATCGTAGTTCTTG---CTGTTGTTGTT------AGTGTT
EY910707       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
FD582510       <-- TTCTCATCTTCATCGTAGTTTTTGCTGTTGTTGTTGTT------AGTGTT
FD567289       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
FD935125       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EX775341       <-- TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
FD982936       <-- ..................................................
EY931303       --> TTCTCATCTTCATCGTAGTTCTTG---T-GTTGTTGTT------AGTGTT
FD986742       --> TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EX771274       --> ..................................................
EX771463       --> TTCTCATCTTCATCG-AGTTCTT...........................
EX888552       --> TTCTCATCTTCATCGTAGTTCTTG---CTGTTGTTGTT------AGTGTT
EY914712       --> TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EY914932       --> TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
EY916633       --> ..................................................
FD578336       --> TTCTCATCTTCATCGTAGTTTTTGCTGTTGTTGTTGTT------AGTGTT
EW733817       --> TTCTCATCTTCATCGTAGTTCTTG---TTGTTGTTGTT------AGTGTT
FD938864       --> ..................................................
FD578833       --> TTCTCATCTTCATCGTAGTTTTTG---TTGTTGTTGTT---GTTAGTGTT
FY438248       --> TTCTCATCTTCATCGTAGTTGTTG---TTGTTGTTGTTGTTGTTAGTGTT
FY437342       --> TTCTCATCTTCATCGTAGTTGTTG---TTGTTGTTGTTGTTGTTAGTGTT

               401    -    451
UN23116        --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus raphanistrum subsp. landra
EX775500       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus raphanistrum subsp. landra
EX892464       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus var. oleiformis
EY910707       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus var. oleiformis
FD935125       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus var. oleiformis
EX775341       <-- TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTAT.....  Raphanus raphanistrum subsp. landra
FD982936       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY931303       --> TGAATTGATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus var. oleiformis
FD986742       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus raphanistrum subsp. landra
EX771274       --> ..................................................  Raphanus raphanistrum subsp. landra
EX771463       --> ..................................................  Raphanus raphanistrum subsp. landra
EX888552       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus var. oleiformis
EY914712       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTT........  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGCTGTTTATGTATT  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> ..................................................  Raphanus sativus var. oleiformis
FD578833       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus sativus cv GSK3-1
FY437342       --> TGAATTAATGCTTTCTCCCTTTTAGGTGTAAGTTTGGATGTTTATGTATT  Raphanus sativus cv GSK3-1

               451    -    501
UN23116        --> TAGTTTCCCGCTAATGAACATCTGATTTAAGCTCCAAGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX774163       <-- TAATTTCCCGCTAATGAACATCTGATTTAAGCTC.......  Raphanus raphanistrum subsp. landra
EX775500       <-- TAATTTCCCGCTAATGAACATCTGATTTAAGCTCC......  Raphanus raphanistrum subsp. landra
EX892464       <-- TAGTTTCCC................................  Raphanus sativus var. oleiformis
EY910707       <-- TAGTTTCCCGTTAATGAACATCTGATTTAAGCTCCAc....  Raphanus raphanistrum subsp. raphanistrum (NY)
FD582510       <-- TAATTTCCCGCTAATGAACATCTGATTTAAGCTCCAAGTCC  Raphanus sativus cv Rat-Tail Radish #3870
FD567289       <-- TAGTTTCCCGTTAATGAACATCTGATTTAAGCTC.......  Raphanus sativus var. oleiformis
FD935125       <-- TAGTTTCCCGTTAATGAACATCTGATTTAAGCTC.......  Raphanus sativus var. oleiformis
EX775341       <-- .........................................  Raphanus raphanistrum subsp. landra
FD982936       <-- .........................................  Raphanus raphanistrum subsp. landra
EY931303       --> TAGTTTCCCGTTAATGAACATCTGATTTAAGCTC.......  Raphanus sativus var. oleiformis
FD986742       --> TAATTTCCCGCTAATGAACATCTGATTTAAGCTC.......  Raphanus raphanistrum subsp. landra
EX771274       --> .........................................  Raphanus raphanistrum subsp. landra
EX771463       --> .........................................  Raphanus raphanistrum subsp. landra
EX888552       --> TAGTTTCCC................................  Raphanus sativus var. oleiformis
EY914712       --> TAGTTTCCCGTTAATGAACATCTGATTTAAGCTCCAc....  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914932       --> .........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916633       --> .........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD578336       --> TAATTTCCCGCTAATGAACATCTGATTTAAGCTCCAAGTCC  Raphanus sativus cv Rat-Tail Radish #3870
EW733817       --> TAGTTTCCCGTTAATGAACATCTGATTTAAGCTCCc.....  Raphanus sativus cv Rat-Tail Radish #3870
FD938864       --> .........................................  Raphanus sativus var. oleiformis
FD578833       --> TAATTTCCCGCTAATGAACATCTGATTTAAGCTCC......  Raphanus sativus cv Rat-Tail Radish #3870
FY438248       --> TAATTTCCCGCTAATGAACATCTGATTTAAGCTC.......  Raphanus sativus cv GSK3-1
FY437342       --> TAATTTCCCGCTAATGAACATCTGATTTAAGCTCC......  Raphanus sativus cv GSK3-1