1      -     51
UN23121        --> CTTTGAAACTTGATTTTATTAATTTTCATTTTCGATTTTCTGGGAGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- .....AAACTTGATTTTATTAATTTTCATTTTCGATTTTCTGGGAGATAT
EV568848       <-- .....AAACTTGATTTTATTAATTTTCATTTTCGATTTTCTGGGAGATAT
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- ..................................................
FD987810       <-- ..................................................
EX764194       <-- ..................................................
FD937762       <-- ..................................................
FD988147       <-- ..................................................
FD979331       <-- ..................................................
FD987188       <-- ..................................................
EX895141       <-- ..................................................
FD940971       <-- ..................................................
EW726286       <-- ..................................................
FD564333       <-- ..................................................
EV573425       --> CTTTGAAACTTGATTTTATTAATTTTCATTTTCGATTTTCTGGGAAATAT
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               51     -    101
UN23121        --> CTATTTTGTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- CTATTTTGTCACAAAGCATGCGAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. landra
EV568848       <-- CTATTTTGTCACAAAGCATGCGAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> CTATTTTGTCACAAAGCATGCGAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. landra
EV542647       --> .......GTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> .......GTCACAAAGCTTGCGAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. landra
EW729879       --> .......GTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA  Raphanus sativus cv Early Scarlet Globe
EX899355       --> .......GTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA  Raphanus sativus cv Early Scarlet Globe
FD934313       --> .......GTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA  Raphanus sativus var. oleiformis
FD975387       --> .......aTCACAAAGCATGCAAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> .......gcCACAAAGCATGCGAGTTTATTAATAATAAACGAAGGAAACA  Raphanus raphanistrum subsp. landra
EX768164       --> .......gtgACAAAGCATGCAAGTTTATTAATAATAAACGAAGGGAACA  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN23121        --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EV568848       <-- ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- ..................................................
FD987810       <-- ..................................................
EX764194       <-- ..................................................
FD937762       <-- ..................................................
FD988147       <-- ..................................................
FD979331       <-- ..................................................
FD987188       <-- ..................................................
EX895141       <-- ..................................................
FD940971       <-- ..................................................
EW726286       <-- ..................................................
FD564333       <-- ..................................................
EV573425       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EV542647       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EV573656       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EW729879       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EX899355       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
FD934313       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
FD975387       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
FD983279       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT
EX768164       --> ATTAAAATTCTACAACTTTCCACATTCAGTGGGAACAAACGACACCTTAT

               151    -    201
UN23121        --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
EV568848       <-- CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
EV538698       <-- ................................TGCTGCTGAAAATTTCCA
EY908290       <-- .............................................TTCCA
EV569058       <-- ..................................................
FD987810       <-- ..................................................
EX764194       <-- ..................................................
FD937762       <-- ..................................................
FD988147       <-- ..................................................
FD979331       <-- ..................................................
FD987188       <-- ..................................................
EX895141       <-- ..................................................
FD940971       <-- ..................................................
EW726286       <-- ..................................................
FD564333       <-- ..................................................
EV573425       --> CCTTCTCAA.........................................
EV542647       --> CCTTCTCAAGGTCATGAACTACGTTAAAATTCTGCTGCTGAAAATTTCCA
EV573656       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
EW729879       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
EX899355       --> CCTTCTCAAGATCATGAACTACATTAAAATTATGCTGCTGAAAATTTCCA
FD934313       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
FD975387       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
FD983279       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA
EX768164       --> CCTTCTCAAGATCATGAACTACATTAAAATTCTGCTGCTGAAAATTTCCA

               201    -    251
UN23121        --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- AAAACAGACATCCCATTAGGTTTCCCCATAGCCAAACACAAAACACCAG-  Raphanus raphanistrum subsp. landra
EV568848       <-- AAAACAGACATCCCATTAGGTTTCCCCATAGCCAAACACAAAACACCAG-  Raphanus raphanistrum subsp. landra
EV538698       <-- AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- AAA-CAGACATCCCATTAGATT-CCCCATAGCCAA-CACAAA-CACCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAG-  Raphanus raphanistrum subsp. landra
EW729879       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAGC  Raphanus sativus cv Early Scarlet Globe
EX899355       --> AAAACAGACATCCCATTAGATTTTCCCATAGCCAAACACAAAACACCAGC  Raphanus sativus cv Early Scarlet Globe
FD934313       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCA-C  Raphanus sativus var. oleiformis
FD975387       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCA-C  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAG-  Raphanus raphanistrum subsp. landra
EX768164       --> AAAACAGACATCCCATTAGATTTCCCCATAGCCAAACACAAAACACCAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN23121        --> TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. landra
EV568848       <-- TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. landra
EV538698       <-- -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. landra
EW729879       --> -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus sativus cv Early Scarlet Globe
EX899355       --> -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus sativus cv Early Scarlet Globe
FD934313       --> TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus sativus var. oleiformis
FD975387       --> TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> TACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. landra
EX768164       --> -ACTCGGATCCTCCACCATGTAATTATCACCGGGAAGCTCCAAATCCGCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN23121        --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- CCTTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. landra
EV568848       <-- CCTTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. landra
EV538698       <-- CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- CC-TTAAAATGAAAAACCAGCTTAGGAACGGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> CCTTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. landra
EW729879       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus sativus cv Early Scarlet Globe
EX899355       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus sativus cv Early Scarlet Globe
FD934313       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTATCCTCATT  Raphanus sativus var. oleiformis
FD975387       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> CCTTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTAGCCTCATT  Raphanus raphanistrum subsp. landra
EX768164       --> CCCTTAAAATGAAAAACCAGCTTAGGAACAGCGACATTCTTA-CCTCATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN23121        --> AGATAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- AGGTAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCAACCG  Raphanus raphanistrum subsp. landra
EV568848       <-- AGGTAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCAACCG  Raphanus raphanistrum subsp. landra
EV538698       <-- AGATAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- AGATAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> AGATAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCTACTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> AGGTAACGTATAGCACAAGTCAAGTCCTGGGGATCCTGATTCATCAACCG  Raphanus raphanistrum subsp. landra
EW729879       --> AGATAACGTATAGCACAAGTCAAGTCCTGTAGACCCTGATTCATCAACCG  Raphanus sativus cv Early Scarlet Globe
EX899355       --> AGATAACGTATAGCACAAGTCGAGTCCTGTAGACCCTGATTCATCAACCG  Raphanus sativus cv Early Scarlet Globe
FD934313       --> AGATAACGTATAGCACAAGTCAAGTCCTGTAGACCCTGATTCATCAACCG  Raphanus sativus var. oleiformis
FD975387       --> AGATAACGTATAGCACAAGTCAAGTCCTGTAGACCCTGATTCATCAACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> AGGTAACGTATAGCACAAGTCAAGTCCTGTGGATCCTGATTCATCAACCG  Raphanus raphanistrum subsp. landra
EX768164       --> AGATAACGTATAGCACAAGTCAAGTCCTGTAGACCCTGATTCATCAACCG  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN23121        --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- GTAAACTCGTCCGCGAAGTAAACTCCTTCTTCAATGTATTAAACACCTCC  Raphanus raphanistrum subsp. landra
EV568848       <-- GTAAACTCGTCCGCGAAGTAAACTCCTTCTTCAATGTATTAAACACCTCC  Raphanus raphanistrum subsp. landra
EV538698       <-- GTAAACTCATCCGAGAAGTAAACTCCTTCTTCAAGGTATTAAACACCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- GTAAACTCATCCGAGAAGTAAACTCCTTCTTCAAGGTATTAAACACCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> GTAAACTCATCCGAGAAGTAAACTCCTTCTTCAAGGTATTAAACACCTCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> GTAAACTCATCCGCGAA-AAAACTCCTTCTTCAATGTATTAAACACCTCC  Raphanus raphanistrum subsp. landra
EW729879       --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC  Raphanus sativus cv Early Scarlet Globe
EX899355       --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC  Raphanus sativus cv Early Scarlet Globe
FD934313       --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC  Raphanus sativus var. oleiformis
FD975387       --> GTAAACTCATCCGTGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAATGTATTAAACACCTCC  Raphanus raphanistrum subsp. landra
EX768164       --> GTAAACTCATCCGCGAAGTAAACTCCTTCTTCAAGCTATTAAACACCTCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN23121        --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATGCCTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- TCCTCTAGATACGTGAGGGTCGTGCCAGAATCTATGATCATGCCTCCTGT  Raphanus raphanistrum subsp. landra
EV568848       <-- TCCTCTAGATACGTGAGGGTCGTGCCAGAATCTATGATCATGCCTCCTGT  Raphanus raphanistrum subsp. landra
EV538698       <-- TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATACCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATACCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATACCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAATCTATGATCATGCCTCCTGT  Raphanus raphanistrum subsp. landra
EW729879       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATGCCTCCTGT  Raphanus sativus cv Early Scarlet Globe
EX899355       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATGCCTCCTGT  Raphanus sativus cv Early Scarlet Globe
FD934313       --> TCCTCTAGATACGTGAGGGTCGTTCCAGAATCTATGATCATACCTCCTGT  Raphanus sativus var. oleiformis
FD975387       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATACCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAATCTATGATCATGCCTCCTGT  Raphanus raphanistrum subsp. landra
EX768164       --> TCCTCTAGATACGTGAGGGTCGTGCCAGAGTCTATGATCATGCCTCCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN23121        --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EV568848       <-- TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EV538698       <-- TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EY908290       <-- TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EV569058       <-- ..................................................
FD987810       <-- ..................................................
EX764194       <-- ..................................................
FD937762       <-- ..................................................
FD988147       <-- ..................................................
FD979331       <-- ..................................................
FD987188       <-- ..................................................
EX895141       <-- ..................................................
FD940971       <-- ..................................................
EW726286       <-- ..................................................
FD564333       <-- ..................................................
EV573425       --> ..................................................
EV542647       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EV573656       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EW729879       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EX899355       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
FD934313       --> TCCATCTTCAGCTAGTTCGAACGTAGACTTCTCTATAGAAAGACGTTTTG
FD975387       --> TCCATCTTCAGCTAGTTCGAACGTAGACTTCTCTATAGAAAGACGTTTTG
FD983279       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG
EX768164       --> TCCATCTTCAGCTAGTTCGAACATAGACTTCTCTATAGAAAGACGTTTTG

               551    -    601
UN23121        --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGGCTA  Raphanus raphanistrum subsp. landra
EV568848       <-- AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGGCTA  Raphanus raphanistrum subsp. landra
EV538698       <-- AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTAACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTAACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGGCTA  Raphanus raphanistrum subsp. landra
EW729879       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGACTA  Raphanus sativus cv Early Scarlet Globe
EX899355       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGACTA  Raphanus sativus cv Early Scarlet Globe
FD934313       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGGCTA  Raphanus sativus var. oleiformis
FD975387       --> ATCCAACGGTGATGCCTTGTAGGTCAAGGTAGTAAAACGAGGGCTGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGGCTA  Raphanus raphanistrum subsp. landra
EX768164       --> AACCGACGGTGATGCCTTGTAGGTCAAGGTAATAGAACGAGGGCTGACTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN23121        --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTTCTAACCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCGCCTTCTAACCTCCC  Raphanus raphanistrum subsp. landra
EV568848       <-- GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCGCCTTCTAACCTCCC  Raphanus raphanistrum subsp. landra
EV538698       <-- GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTTCTAACCTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTTCTAACCTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTTCTAACCTCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCGCCTTCTAACCTCCC  Raphanus raphanistrum subsp. landra
EW729879       --> GGGTTTCGTAACAAGGAAATGGTTTTGGTGGCTTCACCTCCTAACCTCCC  Raphanus sativus cv Early Scarlet Globe
EX899355       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTCCTAACCTCCC  Raphanus sativus cv Early Scarlet Globe
FD934313       --> GGGTTTCGTAACAAGGAAATGGTTCTGGTGGCTTCGCCTTCTAACCTCCC  Raphanus sativus var. oleiformis
FD975387       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTTCTAACCTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCGCCTTCTAACCTCCC  Raphanus raphanistrum subsp. landra
EX768164       --> GGGTTTCGTAGCAAGGAAATGGTTTTGGTGGCTTCACCTCCTAACCTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN23121        --> ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus raphanistrum subsp. landra
EV568848       <-- ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus raphanistrum subsp. landra
EV538698       <-- ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGCGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGAGCGC  Raphanus raphanistrum subsp. landra
EW729879       --> ACCGCTTTTCTTGACTATATCCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ACCGCTTTTCTTGACTATATCCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCGATAAACAGCGAGC  Raphanus sativus var. oleiformis
FD975387       --> ACCGCTTTTCTTGACTATATCCGAGGCTAGAGATCCAACGAACAGAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ACCGCTTTTCTTGACTATATTCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus raphanistrum subsp. landra
EX768164       --> AC-GCTTTTCTTGACTATATCCGAGGCTAGAGATCCAATAAACAGAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN23121        --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- TAGATGCTTTGccct...................................  Raphanus raphanistrum subsp. landra
EV568848       <-- TAGATGCTTTGccct...................................  Raphanus raphanistrum subsp. landra
EV538698       <-- TAGACGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- TAGACGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD987810       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX764194       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..................................................  Raphanus sativus var. oleiformis
FD988147       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD979331       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> TAGACGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> TAGATGCTTTGGTATCATCAATAGCGGTCAA...................  Raphanus raphanistrum subsp. landra
EW729879       --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAGGAGAACTTAGTC  Raphanus sativus cv Early Scarlet Globe
EX899355       --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus sativus cv Early Scarlet Globe
FD934313       --> TAGACGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus sativus var. oleiformis
FD975387       --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. landra
EX768164       --> TAGATGCTTTGGTATCATCAATAGCGGTCAAGCAATAAGAGAACTTAGTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN23121        --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
EY908290       <-- TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAc.
EV569058       <-- ..............................................CAAG
FD987810       <-- ..................................................
EX764194       <-- ..................................................
FD937762       <-- ..................................................
FD988147       <-- ..................................................
FD979331       <-- ..................................................
FD987188       <-- ..................................................
EX895141       <-- ..................................................
FD940971       <-- ..................................................
EW726286       <-- ..................................................
FD564333       <-- ..................................................
EV573425       --> ..................................................
EV542647       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
EV573656       --> ..................................................
EW729879       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
EX899355       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGT....................
FD934313       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
FD975387       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
FD983279       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG
EX768164       --> TCCTTGAGCTGAGAAATAAGCGAGAGCGGTCCACGACCAAGACCTACAAG

               801    -    851
UN23121        --> ACCCGACCCTTGAGAGAACCCGTCTCCTTCGTTCTCATCGCCACACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ACCCGACCCTTGAGAGAACCCGTCTCCTTCGTTCTCATCACCACACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ACCCGACCCTTGAGAGAACCCGTCTCTTTCGTTCTCATCGCCACACCCAA  Raphanus raphanistrum subsp. landra
FD987810       <-- .CCCGACCCTTGAGAGAACCCGTCTC-TTCGTTCTCATCGCCACACCCAA  Raphanus raphanistrum subsp. landra
EX764194       <-- ........................TCCTTCGT-CTCATCACCACACCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ..............................GTTCTCATCCCCACACCCAA  Raphanus sativus var. oleiformis
FD988147       <-- ...............................gTCTCATCGCCACACCCAA  Raphanus raphanistrum subsp. landra
FD979331       <-- .................................CTCATCGCCACACCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX895141       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ..................................................  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ACCCGACCCTTGAGAGAACCCGTCTCCTTCGTTCTCATCACCACACCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ACCCGACCCTTGAGAAAACCCGTCTCCTTCGTTCTCATC-ACACA-CCAA  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ACCCGACCCTTGAGAGAACCCGTCTCCTTCGTTCTCATCCCCACACCCAA  Raphanus sativus var. oleiformis
FD975387       --> ACCCGACCCTTGAGAGAACCCGTCTCCTTCGTTCTCATCGCCACACCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ACCCGACCCTTGAGAGAACCCGTC..........................  Raphanus raphanistrum subsp. landra
EX768164       --> ACCCGACC-TTGAGAAAACCCGTCTCCTTCGTTCTCATCacacacc....  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN23121        --> ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ACCCTATACCCGAAACAGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. landra
FD987810       <-- ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTC-TTG  Raphanus raphanistrum subsp. landra
EX764194       <-- ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ACCCTATACCCGAAACAGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus sativus var. oleiformis
FD988147       <-- ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. landra
FD979331       <-- ACCCTATACCCGAAACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ..............ACCGAGTTTTCGCCACCGAAAGTGAACGTTTCCTTG  Raphanus raphanistrum subsp. landra
EX895141       <-- ....................TTTTCGCCAC-GAAAGTGAACGTTTCTTTG  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ................................AAAGTGAACGTTTCTTTG  Raphanus sativus var. oleiformis
EW726286       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ACCCTATACCCGAAACAGAGTTTTCGCCACCGAAAGTGAACGTTTCCTT.  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ACCCTATACCCGAAAC-GAGTTTcgcacgaacgtgacgtt..........  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ACCCTATACCCGAAACAGAGTT............................  Raphanus sativus var. oleiformis
FD975387       --> ACC...............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN23121        --> GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
EY908290       <-- ..................................................
EV569058       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
FD987810       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
EX764194       <-- GCTAAGACCCCTCTTGTAGACGAGTAATCTCCATAGGTATACAAATACTC
FD937762       <-- GCCAAGACCCCTCTTGTGGACGAGTAGTCTCCATAGGTATACAAATACTC
FD988147       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
FD979331       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
FD987188       <-- GCCAAGACCCCTCTTGTGGACGAGTAATCTCCATAGGTATACAAATACTC
EX895141       <-- GCCAAGACCCCTCTTGTAGACGAGTAATCTCCATAGGTATACAAATACTC
FD940971       <-- GCCAAGACCCCTCTTGTGGACGAGTAGTCTCCATAGGTATACGAATACTC
EW726286       <-- .............TTGTAGACGAGTAATCTCCATAGGTATACAAATACTC
FD564333       <-- ..................................................
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               951    -   1001
UN23121        --> ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAATGCGTAGCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ACAAGCTTCTTCGTCTTGc...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAATGCGTAGCAAA  Raphanus raphanistrum subsp. landra
FD987810       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAATGCGTAGCAAA  Raphanus raphanistrum subsp. landra
EX764194       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAGTGCGTAGCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- ACAAGCTCCTTCGTCTCGGTTGCAAGTAGACCGAGGCAAGGCATAGCAAA  Raphanus sativus var. oleiformis
FD988147       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAATGCGTAGCAAA  Raphanus raphanistrum subsp. landra
FD979331       <-- ACAAGCTCCTTCGTCTTGGTTGCAGGTAGACCGAGGCAGTGCGTAGCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- ACAAGCTCCTTCGTCTTGGTCGCAGCTAGACCGAGGCAATGCGTAGCAAA  Raphanus raphanistrum subsp. landra
EX895141       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAGTGCGTAGCAAA  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- ACAAGCTCCTTCGTCTCGGTTGCAAGTAGACCGAGGCAAGGCATAGCAAA  Raphanus sativus var. oleiformis
EW726286       <-- ACAAGCTCCTTCGTCTTGGTTGCAGCTAGACCGAGGCAGTGCGTAGCAAA  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN23121        --> GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD987810       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
EX764194       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD937762       <-- GACCAGAAGAGCATCCAACTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD988147       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD979331       <-- GACCAGAAGAGCATCCAACTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD987188       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
EX895141       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD940971       <-- GACCAGAAGAGCATCCAACTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
EW726286       <-- GACCAGAAGAGCATCCAATTTTTGTGTAAGAAGAAGACCTTTTCGGGTCG
FD564333       <-- ..................................................
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               1051   -   1101
UN23121        --> AAAATAGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- AAAATAGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. landra
FD987810       <-- AAA-TAGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. landra
EX764194       <-- AAAATCGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- AAAATAGGAGATGGTTGGTCGTAACATTCGGTGCAAGGCTTGCATTGCGT  Raphanus sativus var. oleiformis
FD988147       <-- AAA-TAGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. landra
FD979331       <-- AAAATCGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- AAAATAGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus raphanistrum subsp. landra
EX895141       <-- AAAATCGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- AAAATAGGAGATGGTTGGTCGTAACATTCGGTGCAAGGCTTGCATTGCGT  Raphanus sativus var. oleiformis
EW726286       <-- AAAATCGGAGATGGTTGGTCGTAACACTCGGTGCAAGGCTTGCATTGCGT  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ..................................................  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN23121        --> CCATATAAGGTCACTTCCGGTATCTAATATAGCAGAGTATTTAGCCGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- CCATATAAGGTCACTTCCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus raphanistrum subsp. landra
FD987810       <-- CCATATAAGGTCACTTCCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus raphanistrum subsp. landra
EX764194       <-- CCATACAAGGTCGCTCCCTGTATCTAATATAGCAGAGTATTTAACCGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- CCATATGAGGTCACTACCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus sativus var. oleiformis
FD988147       <-- CCATATAAGGTCACTTCCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus raphanistrum subsp. landra
FD979331       <-- CCATACAAGGTCACTCCCTGTATCTAATATAGCAGAGTATTTAACCGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- CCATATAAGGTCACTTCCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus raphanistrum subsp. landra
EX895141       <-- CCATACAAGGTCACTCCCTGTATCTAATATAGCAGAGTATTTAACCGGAG  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- CCATATGAGGTCACTACCGGTATCTAATATAGCAGAGTATTTAGCCGGAG  Raphanus sativus var. oleiformis
EW726286       <-- CCATACAAGGTCACTCCCTGTATCTAATATAGCAGAGTATTTAACCGGAG  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- ...........................caacGCAGAGTATTTAGCCGGAG  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1151   -   1201
UN23121        --> GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTG  Raphanus raphanistrum subsp. landra
FD987810       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTG  Raphanus raphanistrum subsp. landra
EX764194       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus sativus var. oleiformis
FD988147       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTG  Raphanus raphanistrum subsp. landra
FD979331       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTG  Raphanus raphanistrum subsp. landra
EX895141       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGTCGCTTCCTCCATGAGTA  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus sativus var. oleiformis
EW726286       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- GGTTTCCTATAGCTAAATCCACAAGAAACTCGCCGCTTCCTCCATGAGTA  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1201   -   1251
UN23121        --> GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
FD987810       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
EX764194       <-- GGTGCTTTGATGTTGTTGGTACCATCAGGACGAGATGATACAGACAAAAC
FD937762       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
FD988147       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
FD979331       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
FD987188       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATG-TACAGACAAAAC
EX895141       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACGAGATGATACAGACAAAAC
FD940971       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
EW726286       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACGAGATGATACAGACAAAAC
FD564333       <-- GGTGCTTTGATGTTGTTGGTATCATCAGGACTAGATGATACAGACAAAAC
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               1251   -   1301
UN23121        --> AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD987810       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
EX764194       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD937762       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD988147       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD979331       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCACGGTTAATACCTC
FD987188       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
EX895141       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD940971       <-- AGCTGCAGCTCCTAACCTGTTTAGCATGTGGAATCCGCGGTTAATACCTC
EW726286       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
FD564333       <-- AGCTGCAGCTCCTAACCTGTTTAGCCTGTGGAATCCGCGGTTAATACCTC
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               1301   -   1351
UN23121        --> TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
FD987810       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
EX764194       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
FD937762       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
FD988147       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
FD979331       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGCTGT
FD987188       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
EX895141       <-- TTTGGATCTTTTGGATCTTTGCGAGGTTTTTACCGGAGTCTACGTGTTGT
FD940971       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
EW726286       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
FD564333       <-- TTTGGATCTTTTGGATCTTTGTGAGGTTTTTACCGGAGTCTACGTGTTGT
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               1351   -   1401
UN23121        --> AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGTT  Raphanus raphanistrum subsp. landra
FD987810       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGTT  Raphanus raphanistrum subsp. landra
EX764194       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus sativus var. oleiformis
FD988147       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGTT  Raphanus raphanistrum subsp. landra
FD979331       <-- AGACTCAATCGAAAACCGGATCTTGGAAGGTTTGCTGGAGGATGATGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGTT  Raphanus raphanistrum subsp. landra
EX895141       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus sativus var. oleiformis
EW726286       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- AGACTTAATCGAAAACCGGATCTTGGAAGGTTTGTTGGAGGAGGATGGCT  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1401   -   1451
UN23121        --> GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................
EV568848       <-- ..................................................
EV538698       <-- ..................................................
EY908290       <-- ..................................................
EV569058       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
FD987810       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
EX764194       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAAAGA
FD937762       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
FD988147       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
FD979331       <-- GGTTAATGATTTTCTTGATGATGATAGAGCGATGAAACATGAGAAAATGA
FD987188       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
EX895141       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAAAGA
FD940971       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
EW726286       <-- GGTTAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAAAGA
FD564333       <-- GGTCAATGATTTTCTTGATGATGAAAGAGCGATGAAACATGAGAAAATGA
EV573425       --> ..................................................
EV542647       --> ..................................................
EV573656       --> ..................................................
EW729879       --> ..................................................
EX899355       --> ..................................................
FD934313       --> ..................................................
FD975387       --> ..................................................
FD983279       --> ..................................................
EX768164       --> ..................................................

               1451   -   1501
UN23121        --> TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTGTGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV568848       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV538698       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908290       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569058       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus raphanistrum subsp. landra
FD987810       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus raphanistrum subsp. landra
EX764194       <-- TAAGAAAGAAAAAGAGTAACAAAGAAGAAGCCATGGTTTGTGTGTGTctg  Raphanus raphanistrum subsp. raphanistrum (NY)
FD937762       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus sativus var. oleiformis
FD988147       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus raphanistrum subsp. landra
FD979331       <-- TAAGAAAGTAAAAGAGTAACAAAGAAGAAGCCATAGTTTGTGTGTGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD987188       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus raphanistrum subsp. landra
EX895141       <-- TAAGGAAGAAAAAGAGTAACAAAGAAGAAGCCATGGTTTGTGTGTGTctg  Raphanus sativus cv Early Scarlet Globe
FD940971       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus sativus var. oleiformis
EW726286       <-- TAAGAAAGAAAAAGAGTAACAAAGAAGAAGCCATGGTTTGTGTGTGTctg  Raphanus sativus cv Early Scarlet Globe
FD564333       <-- TAAGAAAGAAAGGGAGTAACAAAGAAGAAGCCATGGTTTGTGTtggatga  Raphanus sativus var. oleiformis
EV573425       --> ..................................................  Raphanus raphanistrum subsp. landra
EV542647       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573656       --> ..................................................  Raphanus raphanistrum subsp. landra
EW729879       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX899355       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD934313       --> ..................................................  Raphanus sativus var. oleiformis
FD975387       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD983279       --> ..................................................  Raphanus raphanistrum subsp. landra
EX768164       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1501   -   1551
UN23121        --> TGAGAGATTAGTGGATGATGTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EV568776       <-- ........................
EV568848       <-- ........................
EV538698       <-- ........................
EY908290       <-- ........................
EV569058       <-- tgtcc...................
FD987810       <-- tgtccc..................
EX764194       <-- agtggatgatcc............
FD937762       <-- tgtcc...................
FD988147       <-- tgtccc..................
FD979331       <-- TGAGAGATTAGTGGATGATGTCCC
FD987188       <-- tgtccc..................
EX895141       <-- agtggatgatgtcc..........
FD940971       <-- tgtcc...................
EW726286       <-- agtggatgatcc............
FD564333       <-- tgtcc...................
EV573425       --> ........................
EV542647       --> ........................
EV573656       --> ........................
EW729879       --> ........................
EX899355       --> ........................
FD934313       --> ........................
FD975387       --> ........................
FD983279       --> ........................
EX768164       --> ........................