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Alignment for radish unigene UN23138

               0      -     50
UN23138        --> .AGCAAGTTAAGAAATCAATTCTTCATAAGATCATCATCCATTCATCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> .AGCAAGTTAAGAAATCAATTCTTCATAAGATCATCATCCATTCATCCCC
EY910880       --> cgGCAAGTTAAGAAATCAATTCTTCATAAGATCATCATCCATTCATCCCC
EY945566       --> .gGCAAGTTAAGAAATCAATTCTTCATAAGATCATCATCCATTCATCCCC
FD975180       --> ........................CATAAGATCATCATCCATTCATCCCC

               50     -    100
UN23138        --> AAGAAAACTAATACAAAGAACAAAAAAAATTCTAGACTCTGAGAGTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> AAGAAAACTAATACAAAGAACAAAAAAAATTCTAGATTCTGAGAGTACCT
EY910880       --> AAGAAAACTAATACAAAGAACAAAAAAAATTCTAGACTCTGAGAGTACCT
EY945566       --> AAGAAAACTAATACAAAGAACAAAAAAAATTCTAGACTCTGAGAGTACCT
FD975180       --> AAGAAAACTAATACAAAGAACAAAAAAAATTCTAGACTCTGAGAGTACCT

               100    -    150
UN23138        --> TCACTTGCAAAAAATGAAAACCAACGTCGAAATTTCTGACAAAACGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> TCACTTGCAAAAAATGAAAACCAACGTCGAAATTTCTGACAAAACGATGA
EY910880       --> TCACTTGCAAAAAATGAAAACCAACGTCGAAATTTCTGACAAAACGATGA
EY945566       --> TCACTTGCAAAAAATGAAAACCAACGTCGAAATTTCTGACAAAACGATGA
FD975180       --> TCACTTGCAAAAAATGAAAACCAACGTCGAAATTTCTGACAAAACGATGA

               150    -    200
UN23138        --> ACAAAAAAAACTATATTTATGATCTTCTGGGCTCTTTTCCCCCTCATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> ACAAAAAAAACTATATTTATGATCTTCTGGGCTCTTTTCCCCCTCATTGA
EY910880       --> ACAAAAAAAACTATATTTATGATCTTCTGGGCTCTTTTCCCCCTCATTGA
EY945566       --> ACAAAAAAAACTATATTTATGATCTTCTGGGCTCTTTTCCCCCTCATTGA
FD975180       --> ACAAAAAAAACTATATTTATGATCTTCTGGGCTCTTTTCCCCCTCATTGA

               200    -    250
UN23138        --> GTTTTTGGCTTCTCGATCTTGACGTAAGGAAGAACTCCCAGAAAGTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> GTTTTTGGCTTCTCAATCTTGACGTAAGGAAGAACTCCCAGAAAGTACTT
EY910880       --> GTTTTTGGCTTCTCGATCTTGACGTAAGGAAGAACTCCCAGAAAGTACTT
EY945566       --> GTTTTTGGCTTCTCGATCTTGACGTAAGGAAGAACTCCCAGAAAGTACTT
FD975180       --> GTTTTTGGCTTCTCGATCTTGACGTAAGGAAGAACTCCCAGAAAGTACTT

               250    -    300
UN23138        --> CACCTTCGGATTCCATCCACGCTGCTGAGCTCGACAGAACATCAAGAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> CACCTTCGGATTCCATCCACGCTGCTGAGCTCGACAGAACATCAAGAACG
EY910880       --> CACCTTCGGATTCCATCCACGCTGCTGAGCTCGACAGAACATCAAGAACG
EY945566       --> CACCTTCGGATTCCATCCACGCTGCTGAGCTCGACAGAACATCAAGAACG
FD975180       --> CACCTTCGGATTCCATCCACGCTGCTGAGCTCGACAGAACATCAAGAACG

               300    -    350
UN23138        --> TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC
EV528211       <-- ...............................................TGC
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC
EY910880       --> TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC
EY945566       --> TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC
FD975180       --> TGTTGGCACAGTAGGAGTTGAAACTCATGAACACATGCCACAGGGCATGC

               350    -    400
UN23138        --> CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- CC-TGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC
EV528211       <-- CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC
EY910880       --> CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAAAAAACACGGTC
EY945566       --> CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC
FD975180       --> CCCTGAGGGTTCACAGGCCACTGAGATATCCTCTCGCAGAAAACACGGTC

               400    -    450
UN23138        --> ACAGAACCAGCAAACACTCCCCACAA-GAATCGTGGCGACATACCACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ACAGAACCAGCAAGCACTCCCCACAAAGAATCGTGGCGACATACCACTTG
EV528211       <-- ACAGAACCAGCAAACACTCCCCACAA-GAATCGTGGCGACATACCACTTG
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> ACAGAACCAGCAAACACTCCCCACAA-GAATCGTGGCGACATACCACTTG
EY910880       --> ACAGAACCAGCAAACACTCCCCACAA-GAATCGTGGCGACATACCACTTG
EY945566       --> ACAGAACCAGCAAACACTCCCCACAA-GAATCGTGGCGACATACCACTTG
FD975180       --> ACAGAACCAGCAAGCACTCCCCACAA-GAATCGTGGCGACATACCACTTG

               450    -    500
UN23138        --> GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
EV528211       <-- GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
EY950204       <-- .........TTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
FD572181       <-- ..................................................
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
EY910880       --> GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
EY945566       --> GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT
FD975180       --> GCAATCCTTTTAGCCGCGGTATCCTCGGTGTGAATGTAGTACTTGTACAT

               500    -    550
UN23138        --> CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
EV528211       <-- CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
EY950204       <-- CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
FD572181       <-- ............................................agCCGA
EY901061       <-- ..................................................
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
EY910880       --> CCGAGGGATGCAAAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA
EY945566       --> CCGAGGGATGCAGAGAA.................................
FD975180       --> CCGAGGGATGCAGAGAAGGCAAAGGACCACGTAGTGGACCTTGAAACCGA

               550    -    600
UN23138        --> TCCCAAACCTGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- TCCCAAACCTGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EV528211       <-- TCCCAAACCTGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EY950204       <-- TCCCAAAC-TGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
FD572181       <-- TCCCAAAC-TGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EY901061       <-- ............GGAAAGCGTGGACAGCAGCAAAAGCAGCAC-GTAGAGG
FD570057       <-- ............GGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EY949659       <-- ..............................................GAGG
EV532267       --> TCCCAAACCTGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EY910880       --> TCCCAAACCTGAGGAAAACGTGGACAGCAGCGAAAGCAGCACCGTAGAGG
EY945566       --> ..................................................
FD975180       --> TCCCAAACCTGAGGAAAGCGTGGACAGCAGCGAAAGCAGCACCGTAGAGG

               600    -    650
UN23138        --> AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCGGTCCGGCGAGTAAAG
EV528211       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
EY950204       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
FD572181       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAATCCGGTGAGTAAAG
EY901061       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
FD570057       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAATCCGGTGAGTAAAG
EY949659       <-- AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
EV532267       --> AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
EY910880       --> AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCAGTCCGGCGAGTAAAG
EY945566       --> ..................................................
FD975180       --> AAGAGAAAAGTGGGCATGGTGCTTCTGTAATGCCGGTCCGGCGAGTAAAG

               650    -    700
UN23138        --> GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGATGTCTCATCGCTCT
EV528211       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EY950204       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
FD572181       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EY901061       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
FD570057       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EY949659       <-- GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EV532267       --> GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EY910880       --> GATGTACATGTAGAGAAGTATCTCCCACACCATCGGCGTCTCATCGCTCT
EY945566       --> ..................................................
FD975180       --> GATGTACATGTAGAGAAGTATCTCCCACACCATCGATGTCTCATCGCTCT

               700    -    750
UN23138        --> GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
EV528211       <-- GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
EY950204       <-- GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
FD572181       <-- GCTGTTGCACGTGCTGCAAAGTGGCGTGGTAGAGCATGCTGCCGATAGCG
EY901061       <-- GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
FD570057       <-- GATGTTGCACGTGCTGCAAAGTGGCGTGGTAGAGCATGCTGCCGATAGCG
EY949659       <-- GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
EV532267       --> GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG
EY910880       --> GCTGTTGCACGTGCTGCAAAGTGG..........................
EY945566       --> ..................................................
FD975180       --> GCTGTTGCACGTGCTGCAAAGTGGCATGGTAGAGCATGCTGCCGATAGCG

               750    -    800
UN23138        --> AGGATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- AGAATCATGTTGGAAACGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
EV528211       <-- AGGATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
EY950204       <-- AGGATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
FD572181       <-- AGGATCATGTTGGAAATGTGGAGAATGCTGAACCTCTTCTCGAACCGTTG
EY901061       <-- AGAATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
FD570057       <-- AGGATCATGTTGGAAATGTGGAGAATGCTGAACCTCTTCTCGAACCGTTG
EY949659       <-- AGGATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
EV532267       --> AGGATCATGTTGGAAATGTGGAGGATGCTGAACCTCTTCTCGAACCGTTG
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> AGAATCATGTTGGAAACGTGGAGGATGCTGAACCTCTTCT..........

               800    -    850
UN23138        --> CCTTAAGGCGTTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- CCTTAAGGCGTTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
EV528211       <-- CCTTAAGGCGTTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
EY950204       <-- TCTTAAGGCGTTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
FD572181       <-- CCTTAAGGCATTGATGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
EY901061       <-- CCTCAAGGCATTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
FD570057       <-- CCTTAAGGCATTGATGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
EY949659       <-- CCTTAAGGCGTTGACGAGACCGATGAGAGCCAAGAGGATCCCAGGGACGT
EV532267       --> CCTTAAGGCGTTGACGAGACCGATGAGAGCCA..................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               850    -    900
UN23138        --> TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
EV528211       <-- TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
EY950204       <-- TGGAGATGGTGTTGTAGAACTCTGCAATGTAAGAGGAGTAGGCGTAGTTC
FD572181       <-- TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
EY901061       <-- TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
FD570057       <-- TGGAGATGGTGTTGTAGAACTCTGCGATGTAAGAGGAGTAGGCGTAGTTC
EY949659       <-- TGGAGATGGTGTTGTAGAACTCTGCAATGTAAGAGGAGTAGGCGTAGTTC
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               900    -    950
UN23138        --> TTCTCACAACACTCTATGGTGGAAGTCACCGGACCCCAGAAGCTCGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- TTCTCACAACACTCTATGGTGGAAGTCACTGGACCCCAGAAGCTCGAT--  Raphanus raphanistrum subsp. raphanistrum (NY)
EV528211       <-- TTCTCACAACACTCTATGGTGGAAGTCACTGGACCCCAGAAGCTCGATAT  Raphanus raphanistrum subsp. maritimus
EY950204       <-- TTCTCACAACACTCTATGATGGAAGTCACCGGACCCCAGAAGCTCGATAT  Raphanus sativus cv Rat-Tail Radish #3870
FD572181       <-- TTCTCACAACACTCTATGGTGGAAGTCACCGGACCCCAGAAGCTCGATAT  Raphanus sativus cv Early Scarlet Globe
EY901061       <-- TTCTCACAACACTCTATGGTGGAAGTCACTGGACCCCAGAAGCTCGATAT  Raphanus raphanistrum subsp. maritimus
FD570057       <-- TTCTCACAACACTCTATGGTGGAAGTCACCGGACCCCAGAAGCTCGATAT  Raphanus sativus cv Early Scarlet Globe
EY949659       <-- TTCTCACAACACTCTATGGTGGAAGTCACCGGACCCCAGAAGCTCGATAT  Raphanus sativus cv Rat-Tail Radish #3870
EV532267       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY910880       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945566       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD975180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               950    -   1000
UN23138        --> CCCATCTGCCATTTTTCTAATCCTTCTCGAAAACTCTTAAA-GTGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- -ATATCTGTCATTTTTCTAATCCTTCTCGAAAACTCTTAAA-GTGTGAGA
EV528211       <-- CCCATCCGCCATTTTTCTAATCCTTCTCGAAAACTCTTAAA-GTGTGAGA
EY950204       <-- CCCATCTGCCATTTTTCTAATCCTTCTCGAAAAC---TCAA-GTGTGAGA
FD572181       <-- CCCATCTGCCATTTT-CTAATCCTTCTCGAAAACTCTTAAAAGTGTGAGA
EY901061       <-- CCCATCTGCCATTTTTCTAATCCTTCTCGAAAACTCTTAAA-GTGTGAGA
FD570057       <-- CCCATCTGCCATTTT-CTAATCCTTCTCGAAAACTCTTAAAAGTGTGAGA
EY949659       <-- CCCATCTGCCATTTTTCTAATCCTTCTCGAAAAC---TCAA-GTGTGAGA
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1000   -   1050
UN23138        --> CTTTT-GACACGTTTAATCGAGGGGCGGGAAGGGTGTTAAAAGAGATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- CTTTT-GACTCGTTTAATCGAGGCGCGGGAAGGTTGTTAAAAGAGATCTA
EV528211       <-- CTTTT-GACACGTTTAATCGAGGGGCGGGAAGGGTGTTAAAAGAGATCTA
EY950204       <-- CTTTT-GACACGTTTAATCGAGGCGCGGGAAGGGTGTTAAAAGAGATCTA
FD572181       <-- CTTTTAGACACGTTTAATCGAGGGGCGGGAAGGGTGTTAAAAGAGATCTA
EY901061       <-- CTTTT-GACACGTTTAATCGAGGGGCGGGAAGGGTGTTAAAAGAGATCTA
FD570057       <-- CTTTTAGACACGTTTAATCGAGGGGCGGGAAGGGTGTTAAAAGAGATCTA
EY949659       <-- CTTTT-GACACGTTTAATCGAGGCGCGGGAAGGGTGTTAAAAGAGATCTA
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1050   -   1100
UN23138        --> TCTCTCTCTCTATCCTTCACCCAGCGAAAGCTCTTATAGCGTTTGTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- T-TCTCTCTCTcc.....................................
EV528211       <-- TCTCTCTCTCTATCCTTCACCCAGCGAAAGCTCTTATAGCGTTTGTTAGC
EY950204       <-- T-TCTCTCTCTCTCCTTCACCCAGCGAAAGCTCTTATAGTGTT-GTTAAT
FD572181       <-- TCTCTCTCTCTATCCTTCACCCAGCGAAAGCTCTTATAGCGTTTGTTAGC
EY901061       <-- TCTCTCTCTCTATCCTTCACCCAGCGAAAGCTCTTATAGCGTTTGTTAGC
FD570057       <-- TCTCTCTCTCTATCCTTCACCCAGCGAAAGCTCTTATAGCGTTTGTTAGC
EY949659       <-- T-TCTCTCTCTCTCCTTCACCCAGCGAAAGCTCTTATAGTGTT-GTTAAT
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1100   -   1150
UN23138        --> AAAACCTCTTAGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- AAAACCTCTTGGCCATGGGAGATCGGAGGAATCAGATGCGAACcc.....
EY950204       <-- AAAACCTCTTAGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
FD572181       <-- AAAACCTCTTAGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
EY901061       <-- AAAACCTCTTGGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
FD570057       <-- AAAACCTCTTAGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
EY949659       <-- AAAACCTCTTAGCCATGGGAGATCGGAGGAATCAGATGCGAACAAATCTT
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1150   -   1200
UN23138        --> CGGGATGACCTTTCTCGGAGTCTCTCTCTATTTCTCCCCTTCTCTGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- CGGGATcc..........................................
FD572181       <-- CGGGATcc..........................................
EY901061       <-- CGGGATGACCTTTCTCGGAGTCTCTCTCTATTTCTCCCCTTCTCTGTTTC
FD570057       <-- CGGGATcc..........................................
EY949659       <-- CGGGATGACCc.......................................
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1200   -   1250
UN23138        --> GACAATTGAGGGGTATTTTCGTCTTCTTATCTTCTGGGATTTTGGATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD979054       <-- ..................................................
EV528211       <-- ..................................................
EY950204       <-- ..................................................
FD572181       <-- ..................................................
EY901061       <-- GACAATTGAGGGGTATTTTCGTCTTCTTATCTTCTGGGATTTTGGATTAA
FD570057       <-- ..................................................
EY949659       <-- ..................................................
EV532267       --> ..................................................
EY910880       --> ..................................................
EY945566       --> ..................................................
FD975180       --> ..................................................

               1250   -   1300
UN23138        --> GTTTAAGAGAAAAAA
                   ~~~~~~~~~~~~~~~
FD979054       <-- ...............
EV528211       <-- ...............
EY950204       <-- ...............
FD572181       <-- ...............
EY901061       <-- GTTTAAGAGAAAAAA
FD570057       <-- ...............
EY949659       <-- ...............
EV532267       --> ...............
EY910880       --> ...............
EY945566       --> ...............
FD975180       --> ...............