RadishBase

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Alignment for radish unigene UN23151

               0      -     50
UN23151        --> .GGCTTCCGCTTCCAGCTTTGCCGTACTCCGGAGTGTTCTCGCAACCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- .GGCTTCCGCTTCCAGCTTTGCCGTACTCCGGAGTGTTCTCGCAACCTTA
EX776563       <-- ......ggctcccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
FD575108       <-- .......gcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
EX907898       <-- .................................gttTTCTCGCAACCCTA
EW730531       <-- .................................................A
EY896491       <-- ..................................................
EX909914       <-- ..................................................
EX907829       <-- ..................................................
FD573034       <-- ..................................................
EY911860       <-- ..................................................
EX903833       --> .GGCTTTCGCTTCCAGCTTTGCCGTACTCCGGAGTGTTCTCGCAACCTTA
EX906366       --> .GGCTTCCGCTTCCAGCTTTGCCGTACTCCGGAGTGTTCTCGCAACCTTA
EW726357       --> ggctttcgcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
EY897067       --> ........................tctgtCGGAGTGTTCTCGCAACCTTA
EY901106       --> .....gggctcccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
EY916130       --> .....gggcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
FD568727       --> .....gggcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
FD570023       --> .....gggcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
FD571249       --> ggctttcgcccccagcttttgccttctgtCGGAGTGTTCTCGCAACCTTA
HS106989       --> .......gcacgaggcttttgccttctgtCGGAGTGTTCTCGCAACCTTA

               50     -    100
UN23151        --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- ATCGCAAATGGCGTCGGAGAAGCAGCTAACGAACCCAATGAGGGACATAA
EX776563       <-- ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
FD575108       <-- ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EX907898       <-- ATCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EW730531       <-- ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EY896491       <-- ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EX909914       <-- ....CAAATGGCGTCGGAGAAGCAGCTAACGAACCCAATGAGGGACATAA
EX907829       <-- ........................GCTAACGAACCCAATGAGGGACATAA
FD573034       <-- ..................................................
EY911860       <-- ..................................................
EX903833       --> ATCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EX906366       --> ATCGCAAATGGCGTCGGAGAAGCAGCTAACGAACCCAATGAGGGACATAA
EW726357       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EY897067       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EY901106       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
EY916130       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
FD568727       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
FD570023       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
FD571249       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA
HS106989       --> ACCGCAAATGGCGTCGGAGAAGAAGCTAACGAACCCAATGAGGGACATAA

               100    -    150
UN23151        --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776563       <-- AAGTGCAGAAGCTGGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. landra
FD575108       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
EX907898       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Rat-Tail Radish #3870
EW730531       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
EY896491       <-- AAGTGCAGAAGCTGGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. maritimus
EX909914       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Rat-Tail Radish #3870
EX907829       <-- AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD573034       <-- ..................TCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
EY911860       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903833       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Rat-Tail Radish #3870
EX906366       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Rat-Tail Radish #3870
EW726357       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
EY897067       --> AAGTGCAGAAGCTGGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. maritimus
EY901106       --> AAGTGCAGAAGCTGGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. maritimus
EY916130       --> AAGTGCAGAGGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568727       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
FD570023       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
FD571249       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus cv Early Scarlet Globe
HS106989       --> AAGTGCAGAAGCTGGTGCTCAACATCTCCGTCGGCGAGAGTGGAGATCGT  Raphanus sativus var. niger

               150    -    200
UN23151        --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCTAGACTCCTGT
EX776563       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
FD575108       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EX907898       <-- CTCACCCGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EW730531       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EY896491       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EX909914       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCTAGACTCCTGT
EX907829       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
FD573034       <-- CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EY911860       <-- ..................................................
EX903833       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EX906366       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCTAGACTCCTGT
EW726357       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EY897067       --> CTCACCAGAGCCTCCAAGGTCTTGGAACATTTGAGTGGCCAGACTCCTGT
EY901106       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
EY916130       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
FD568727       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
FD570023       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
FD571249       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT
HS106989       --> CTCACCAGAGCCTCCAAGGTCTTGGAACAGTTGAGTGGCCAGACTCCTGT

               200    -    250
UN23151        --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EX776563       <-- TTTTTCCAAAGCAAGGTACACT--GC-TTCTTTTGGTATCAGACGTAACG
FD575108       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EX907898       <-- TTTCTCCAAAGCAAGGTACACGGTTCGTTCTTTTGGTATCAGACGTAACG
EW730531       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EY896491       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EX909914       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EX907829       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
FD573034       <-- TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EY911860       <-- ..................................................
EX903833       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EX906366       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EW726357       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EY897067       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EY901106       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
EY916130       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
FD568727       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
FD570023       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
FD571249       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG
HS106989       --> TTTCTCCAAAGCAAGGTACACTGTTCGTTCTTTTGGTATCAGACGTAACG

               250    -    300
UN23151        --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EX776563       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGACAAAGCAATGCAGTTC
FD575108       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EX907898       <-- AGAAGATTGCTTGCTACGTTACTGTCAGGGGAGATAAAGCTATGCAGCTC
EW730531       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EY896491       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGACAAAGCAATGCAGCTC
EX909914       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EX907829       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
FD573034       <-- AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EY911860       <-- .....................CCGTCAGGGGAGATAAAGCTATGCAGCTC
EX903833       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EX906366       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EW726357       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
EY897067       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGACAAAGCAATGCAGCTC
EY901106       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGACAAAGCAATGCAGCTC
EY916130       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
FD568727       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
FD570023       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
FD571249       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC
HS106989       --> AGAAGATTGCTTGCTACGTTACCGTCAGGGGAGATAAAGCTATGCAGCTC

               300    -    350
UN23151        --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- CTTGAAAGTGGTCTCAGGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776563       <-- CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. landra
FD575108       <-- CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Early Scarlet Globe
EX907898       <-- CTTGAAAGTGGTCTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
EW730531       <-- CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTC  Raphanus sativus cv Early Scarlet Globe
EY896491       <-- CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. maritimus
EX909914       <-- CTTGAAAGTGGTCTCAGGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
EX907829       <-- CTTGAAAGTGGTCTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
FD573034       <-- CTTGAAAGTGGACTCAAGGT-AAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Early Scarlet Globe
EY911860       <-- CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903833       --> CTTGAAAGTGGTCTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
EX906366       --> CTTGAAAGTGGTCTCAGGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Rat-Tail Radish #3870
EW726357       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTC  Raphanus sativus cv Early Scarlet Globe
EY897067       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. maritimus
EY901106       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. maritimus
EY916130       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568727       --> CTTGAAAGTGGACTCAAGGT-AAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Early Scarlet Globe
FD570023       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGGAGGAACTT  Raphanus sativus cv Early Scarlet Globe
FD571249       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus cv Early Scarlet Globe
HS106989       --> CTTGAAAGTGGACTCAAGGTTAAAGAGTATGAGCTCTTGAGAAGGAACTT  Raphanus sativus var. niger

               350    -    400
UN23151        --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776563       <-- CAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. landra
FD575108       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
EX907898       <-- CAGCGACACTGGTTGCTTCGGTTTCGGTATTCAGGAGCACATTGATCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EW730531       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
EY896491       <-- CAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. maritimus
EX909914       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EX907829       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD573034       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
EY911860       <-- TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903833       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EX906366       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Rat-Tail Radish #3870
EW726357       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
EY897067       --> CAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. maritimus
EY901106       --> CAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. maritimus
EY916130       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568727       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
FD570023       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
FD571249       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus cv Early Scarlet Globe
HS106989       --> TAGCGACACTGGTTGCTTTGGTTTCGGTATCCAGGAGCACATTGATCTTG  Raphanus sativus var. niger

               400    -    450
UN23151        --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- GTATCAAGTATGACCCGTCCACTGGAATCTACGGTATGGACTTCTATGTT
EX776563       <-- GTATCAAGTATGACCCGTCGACTGGAATTTACGGTATGGACTTCTATGTT
FD575108       <-- GTATCAAGTATGACCCGTCGACTGGAATTTACGGTATGGACTTCTATGTT
EX907898       <-- GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
EW730531       <-- GTATCAAGTATGACCCGTCGACTGGAATTTACGGTATGGACTTCTATGTT
EY896491       <-- GTATCAAGTATGACCCGTCGACTGGAATTTACGGTATGGACTTCTATGTT
EX909914       <-- GTATCAAGTATGACCCGTCCACTGGAATCTACGGTATGGACTTCTATGTT
EX907829       <-- GTATCAAGTATGACCCGTCCACTGGAATCTACGGTATTGACTTCTATGTT
FD573034       <-- GTATCAAGTATGACCCGTCGACTGGAATTTACGGTATGGACTTCTATGTT
EY911860       <-- GTATCAAGTATGACCCGTGGACTGGAATTTACGGTATGGACTTTTATGTT
EX903833       --> GTATCAAGTATGACCCGTCCACTGGAATCTACGGTATTGACTTCTATGTT
EX906366       --> GTATCAAGTATGACCCGTCCACTGGAATCTACGGTATGGACTTCTATGTT
EW726357       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
EY897067       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
EY901106       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
EY916130       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
FD568727       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
FD570023       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
FD571249       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT
HS106989       --> GTATCAAGTATGACCCGTCGACTGGAATCTACGGTATGGACTTCTATGTT

               450    -    500
UN23151        --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
EX776563       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
FD575108       <-- GCTCTTGAGCGTCCTGGTTACCGGGTGGCGCGTCGCAGAAGATGCAAGAC
EX907898       <-- GTTCTTGAGCGTCCCGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGGC
EW730531       <-- GTCCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGTAGAAGATGCAAGAC
EY896491       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGGC
EX909914       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
EX907829       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
FD573034       <-- GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
EY911860       <-- GTTTTTGAGCGTCCTGGTTACCGTGGGGGGCGT.................
EX903833       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
EX906366       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
EW726357       --> GTCCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGTAGAAGATGCAAGAC
EY897067       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGGC
EY901106       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGGC
EY916130       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
FD568727       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
FD570023       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC
FD571249       --> GCTCTTGAGCGTCCTGGTTACCGGGTGGCGCGTCGCAGAAGATGCAAGAC
HS106989       --> GTTCTTGAGCGTCCTGGTTACCGTGTGGCGCGTCGCAGAAGATGCAAGAC

               500    -    550
UN23151        --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776563       <-- TCGTGTTGGAATCCAGCACAGAGTCACCAAAGATGATGCCATGAAATGGT  Raphanus raphanistrum subsp. landra
FD575108       <-- TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
EX907898       <-- TCGTGTTGGAATCCAGCACAGAGTCACCAAAGATGATGCCATGAAATGGT  Raphanus sativus cv Rat-Tail Radish #3870
EW730531       <-- TCGTGTTGGTATCCAGCACAGAGTCACGAAGGATGATGCTATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
EY896491       <-- TCGTGTTGGAATCCAGCACAGAGTCACGAAGGATGATGCCATGAAATGAT  Raphanus raphanistrum subsp. maritimus
EX909914       <-- TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
EX907829       <-- TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
FD573034       <-- TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
EY911860       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903833       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
EX906366       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
EW726357       --> TCGTGTTGGTATCCAGCACAGAGTCACGAAGGATGATGCTATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
EY897067       --> TCGTGTTGGAATCCAGCACAGAGTCACGAAGGATGATGCCATGAAATGGT  Raphanus raphanistrum subsp. maritimus
EY901106       --> TCGTGTTGGAATCCAGCACAGAGTCACGAAGGATGATGCCATGAAatga.  Raphanus raphanistrum subsp. maritimus
EY916130       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568727       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
FD570023       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
FD571249       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus cv Early Scarlet Globe
HS106989       --> TCGTGTTGGGATCCAGCACAGAGTCACGAAGGATGATGCCATGAAGTGGT  Raphanus sativus var. niger

               550    -    600
UN23151        --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EX776563       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
FD575108       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EX907898       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EW730531       <-- TCCAAGTTAAATACGGAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EY896491       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EX909914       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EX907829       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
FD573034       <-- TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EY911860       <-- ..................................................
EX903833       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EX906366       --> TCCAAGTTAAATACGAAG-AGTCATTCTCAACAAGTCTCAGAACATTACT
EW726357       --> TCCAAGTTAAATACGGAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EY897067       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
EY901106       --> ..................................................
EY916130       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
FD568727       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
FD570023       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
FD571249       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT
HS106989       --> TCCAAGTTAAATACGAAGGAGTCATTCTCAACAAGTCTCAGAACATTACT

               600    -    650
UN23151        --> GGTTAAACAACAAAA-T-GTCTCAGTTAGAGA--T--CTGTAATCTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- GGTTAAACAACAAAA-TTGTCTCAGTTAGAGAGAT--CTGTAATCTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776563       <-- GGTTAAACAACAAAA-TTGTCTCAGTTAGAGAGAT--CTGTAATCTGTGT  Raphanus raphanistrum subsp. landra
FD575108       <-- GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
EX907898       <-- GGTTAAACAACAAAA-TTGTCTCAGTTAGAGAGAT--CTGTAATCTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EW730531       <-- GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
EY896491       <-- GGTTAAGCAACAAAACT-GTTTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus raphanistrum subsp. maritimus
EX909914       <-- GGTTAAACAACAAAA-TTGTCTCAGTTAGAGAGAT--CTGTAATCTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EX907829       <-- GGTTAAACAACAAAA-TTGTCTCAGTTAGAGA--TATCTGTAATCTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
FD573034       <-- GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
EY911860       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903833       --> GGTTAAACAACAAAA-TTGTCTCAGTTAGAGA--TATCTGTAATCTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EX906366       --> GGTTAAACAACAAAA-TTGTCTCAGTTAGAGAGAT--CTGTAATCTGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EW726357       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
EY897067       --> GGTTAAGCAACAAAACT-GTTTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus raphanistrum subsp. maritimus
EY901106       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY916130       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD568727       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
FD570023       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
FD571249       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus cv Early Scarlet Globe
HS106989       --> GGCTAAACAACAAAA-T-GCCTCAGTTAGAGA--T--CTGTAATCTGTGT  Raphanus sativus var. niger

               650    -    700
UN23151        --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EX776563       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
FD575108       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EX907898       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EW730531       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EY896491       <-- GTTTTGTCCACCCCTGGTTTGAATCGTATTTTATCAGTTTTGTTTTTTGC
EX909914       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EX907829       <-- GTTTTGTCCCCCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
FD573034       <-- GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
EY911860       <-- ..................................................
EX903833       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTT-GC
EX906366       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTT-GC
EW726357       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTT-GTTTTT-GC
EY897067       --> GTTTTGTCCACCCCTGGTTTGAATCGTATTTTATCAGTTTTGTTTTT-GC
EY901106       --> ..................................................
EY916130       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC
FD568727       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTG........
FD570023       --> GTTTTGTCC.........................................
FD571249       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTT-GC
HS106989       --> GTTTTGTCCACCCCTGGTTTGAGTCGTATTTTATCAGTTTTGTTTTTTGC

               700    -    750
UN23151        --> TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EX776563       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGAC............
FD575108       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EX907898       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EW730531       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EY896491       <-- TTCTCTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCTTATCTt
EX909914       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EX907829       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTT................
FD573034       <-- TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EY911860       <-- ..................................................
EX903833       --> TTCTTTGTTCTTCAGACATTTGAGTTT-CTTTTaaaaaaa..........
EX906366       --> TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
EW726357       --> TTCTTTGTTCTTCAGACATTTGA...........................
EY897067       --> TTCTCTGTTCTTCAGACATTTGAGTTT.......................
EY901106       --> ..................................................
EY916130       --> TTCTTTGTTCTTCAGACGTTTGAGTTTTCTTTTTAG..............
FD568727       --> ..................................................
FD570023       --> ..................................................
FD571249       --> TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA
HS106989       --> TTCTTTGTTCTTCAGACATTTGAGTTTTCTTTTTAGACATTGCCTATCTA

               750    -    800
UN23151        --> CAATTATTGCCATCGTAACAGGTGTAAGCTGAGGTAAAACACAGTCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- C.................................................
EX776563       <-- ..................................................
FD575108       <-- CAATTATTGCCATCGT..................................
EX907898       <-- CAATTATTGCCATC....................................
EW730531       <-- CAATTATTGCCAccg...................................
EY896491       <-- cttacactgt........................................
EX909914       <-- C.................................................
EX907829       <-- ..................................................
FD573034       <-- CAATTATTGCCATCAAAACAGGTGTAAGCTGAGGTAAAACACAGTCCAGG
EY911860       <-- ..................................................
EX903833       --> ..................................................
EX906366       --> CAAaaaaaaa........................................
EW726357       --> ..................................................
EY897067       --> ..................................................
EY901106       --> ..................................................
EY916130       --> ..................................................
FD568727       --> ..................................................
FD570023       --> ..................................................
FD571249       --> CA-TTATTGCCATCGT..................................
HS106989       --> CAATTATTGCCAT.....................................

               800    -    850
UN23151        --> ATCTAATTATTTCTTTTCGAACTAGTTCCATGGATATAAGGTAATGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- ..................................................
EX776563       <-- ..................................................
FD575108       <-- ..................................................
EX907898       <-- ..................................................
EW730531       <-- ..................................................
EY896491       <-- ..................................................
EX909914       <-- ..................................................
EX907829       <-- ..................................................
FD573034       <-- ATCTAATTATTTCTTTTCGAACTAGTTCCATGGATATAAGGTAATGAACA
EY911860       <-- ..................................................
EX903833       --> ..................................................
EX906366       --> ..................................................
EW726357       --> ..................................................
EY897067       --> ..................................................
EY901106       --> ..................................................
EY916130       --> ..................................................
FD568727       --> ..................................................
FD570023       --> ..................................................
FD571249       --> ..................................................
HS106989       --> ..................................................

               850    -    900
UN23151        --> TTCTTTAGATGTAATCAAGTTAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EX769519       <-- .........................
EX776563       <-- .........................
FD575108       <-- .........................
EX907898       <-- .........................
EW730531       <-- .........................
EY896491       <-- .........................
EX909914       <-- .........................
EX907829       <-- .........................
FD573034       <-- TTCTTTAGATGTAATCAAGTTAACT
EY911860       <-- .........................
EX903833       --> .........................
EX906366       --> .........................
EW726357       --> .........................
EY897067       --> .........................
EY901106       --> .........................
EY916130       --> .........................
FD568727       --> .........................
FD570023       --> .........................
FD571249       --> .........................
HS106989       --> .........................