RadishBase

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Alignment for radish unigene UN23222

               1      -     51
UN23222        --> TCTTCTTACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> TCTTCTTACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
FD535251       --> TCTTCTTACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
FD971988       --> TCTTCTTACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
FD987614       --> TCTTCTTACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
FD569876       --> .....ggACATCGATCGTGTTCAGAAATCATATTCATTACACAACTCTTT
EY941661       --> ..............ggGTGTTCAGAAATCATATTCATTACACAACTCTTT
EX754976       --> ..................................................
FD540933       --> ..................................................
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               51     -    101
UN23222        --> CTCTCTCTCTGAGTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> CTCTCTCTCTGAGTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
FD535251       --> CTCTCTCTCTGAGTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
FD971988       --> CTCTCTCTCTGACTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
FD987614       --> CTCTCTCTCTGAGTTGGATTCTTTTATAACATGTGGTTATCCCTACAGAG
FD569876       --> CTCTCTCT--GAGTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
EY941661       --> CTCTCTCTCTGAGTTGGATTCTTTTATAACATGTGGTGATCCCTACAGAG
EX754976       --> .....................................tgttcggtCAGAG
FD540933       --> ............................................ggAGAG
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               101    -    151
UN23222        --> ACG-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> ACT-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
FD535251       --> ACG-AGTAGAAGCAAAGAATATTGATAGAAATGATGAAAATGAATGTAGG
FD971988       --> ACG-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
FD987614       --> ACG-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
FD569876       --> ACG-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
EY941661       --> ACG-AGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATATAGG
EX754976       --> ACGGAGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATGTAGG
FD540933       --> ACGGAGTAGAAGCAAAGAATATTAATAGAAATGATGAAAATGAATGTAGG
FD558059       --> ...ggGTAGTAGCAAAGAATATTAATAGTAATGATGAAAATGAATATAGG
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               151    -    201
UN23222        --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTAGCGGCAATGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTAGCGGCAATGAAT
FD535251       --> AACGACGCCCTCCGTTGTCGGCAGCG---GCGGAGTTAGCGGCAATGAAT
FD971988       --> AACGACGCCCTCTGTTGTCGGCAGCGTCGGTGGAGTTAGCGGCAATGAAT
FD987614       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTAGCGGCAATGAAT
FD569876       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTACCGGCAATGAAT
EY941661       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTACCGGCAATGAAT
EX754976       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGCGGAGTTAGCGGCAATGAAT
FD540933       --> AACGACGCCCTCCGTTGTCGGCAGCGTCGGTGGAGTTAGCGGCAATGAAT
FD558059       --> AACGACGCCCTCCGTTGACGGCAGCGTCGGCGGAGTTAGCGGCAATGAAT
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               201    -    251
UN23222        --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD535251       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD971988       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD987614       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD569876       --> AGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
EY941661       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
EX754976       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD540933       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
FD558059       --> GGGAGTCCCGACCTGGAGGAATGGTTGTGCAAAGACGAACGGATCAGAGC
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               251    -    301
UN23222        --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
FD535251       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
FD971988       --> TCCGATGCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
FD987614       --> TCCGATTCGCCACGTGTCATCCTCGTCCGGGTCAAATACTTGTCGGTTTA
FD569876       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
EY941661       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
EX754976       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
FD540933       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
FD558059       --> TCCGATTCGCCACGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
EY908614       --> ............gGTGTCATCCGCGTCCGGGTCAAATACTTGTCGGTTTA
EY907697       --> ...........................ggaGTCAAATACTTGTCGGTTTA
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               301    -    351
UN23222        --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..........................................GAAGAAGG
EX759170       <-- ..................................................
EX900971       <-- ..................................................
FD983632       <-- ..................................................
FD573987       <-- ..................................................
EY926106       <-- ..................................................
EY937192       <-- ..................................................
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
FD535251       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
FD971988       --> CCACGAGATCAACATCAACTCCTGATCTAGCTTCGGAGAGTTGAAGAAGG
FD987614       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
FD569876       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
EY941661       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
EX754976       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
FD540933       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
FD558059       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
EY908614       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
EY907697       --> CCACGAGATCAACATCAACTCCCAATCTAGCTTCGGAGAGTTGAAGAAGG
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> ..................................................

               351    -    401
UN23222        --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- TGTTATCTGGTCAGACCGGACTTCACCACGAAGACATGAAGATACTGTAC  Raphanus sativus cv GSK3-1
EX759170       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD573987       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- ..................................................  Raphanus sativus var. oleiformis
EY937192       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX759069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> TGTTATCTGGTCAGACCGGACTTCACCACGAAGACATGAAGATTCTGTAC  Raphanus sativus var. oleiformis
FD535251       --> TGTTGTCTGGTCAGACCGGACTTCACCACGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. maritimus
FD971988       --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> TGTTATCTGGTTAGACCGGACTTCACCACGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. landra
FD569876       --> TGTTATCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus sativus cv Early Scarlet Globe
EY941661       --> TGTTATCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus sativus cv Early Scarlet Globe
EX754976       --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> TGTTATCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. landra
EY908614       --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> TGTTGTCTGGTCAGACCGGACTTCACCATGAAGACATGAAGATTCTGTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> ...............................gGACATGAAGATTCTGTAC  Raphanus sativus cv Early Scarlet Globe
EV569263       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569665       --> ..................................................  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               401    -    451
UN23222        --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus sativus cv GSK3-1
EX759170       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD573987       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- ..................................................  Raphanus sativus var. oleiformis
EY937192       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX759069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> AAAGACAAGGAGAGAGACTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus sativus var. oleiformis
FD535251       --> AAAGACAAGGAGAGAGACTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. maritimus
FD971988       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. landra
FD569876       --> AAAGACAAGGAGAGAGACTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus sativus cv Early Scarlet Globe
EY941661       --> AAAGACAAGGAGAGAGACTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus sativus cv Early Scarlet Globe
EX754976       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGTTGTTAA  Raphanus raphanistrum subsp. landra
EY908614       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> AAAGACAAGGAGAGAGATTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> AAAGACAAGGAGAGAGACTCGAAGATGTTTCTTGATCTTTGCGGTGTTAA  Raphanus sativus cv Early Scarlet Globe
EV569263       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569665       --> ..................................................  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               451    -    501
UN23222        --> AGATCGGTCAAAGCTTGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- AGATCGGTCAAAGCTTGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus sativus cv GSK3-1
EX759170       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD573987       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- ..................................................  Raphanus sativus var. oleiformis
EY937192       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX759069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> AGATCGGCCAAAGCTCGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus sativus var. oleiformis
FD535251       --> AGATCGGTCAAAGCTCGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. maritimus
FD971988       --> AGATCGGTCAAAGCTTGTTCTTAAGGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> AGATCGGTCAAAGCTTGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. landra
FD569876       --> AGATCGGTCAAAGCTCGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus sativus cv Early Scarlet Globe
EY941661       --> AGATCGGTCAAAGCTCGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus sativus cv Early Scarlet Globe
EX754976       --> AGATCGGTCAAAGCTTGTTCTTAAGGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> AGATCGGTCAAAGCTTGTTCTTAAGGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> AGATCGCTCAAAGCTTGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. landra
EY908614       --> AGATCGGTCAAAGCTTGTTCTTAAgg........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> AGATCGGTCAAAGCTTGTTCTTAAGGAAGATCCAATGGCTCAGGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> AGATCGGTCAAAGCTCGTTCTTAAAGAAGATCCAATGGCTCAGGAGAAAC  Raphanus sativus cv Early Scarlet Globe
EV569263       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569665       --> ..................................................  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               501    -    551
UN23222        --> GTCTCCTCGAGAAGAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- GTCTCCTCGAGAAAAGGAAAAACGCCGTCATTGAGAAAGCTATGAAATCA  Raphanus sativus cv GSK3-1
EX759170       <-- ........................CCGTCGTTGAGAAAGCTATGAAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- .............................GTTGAGAAAGCTATGAAATCA  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- .................................gaAAAGCTATGAAATCA  Raphanus raphanistrum subsp. landra
FD573987       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- ..................................................  Raphanus sativus var. oleiformis
EY937192       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX759069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> GTCTCCTGGAGAAGAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA  Raphanus sativus var. oleiformis
FD535251       --> GTCTCCTGGAGAAAAGGAAAAACGCCGTCGTTGAAAAAGCTATGAAATCA  Raphanus raphanistrum subsp. maritimus
FD971988       --> GTCTCCTCGCGAAGAGGAAAAACGCCGTCACTGAGAAAGCTATGAAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> GTCTCCTCGAGAAGAGGAAAAACGCCGTCATTGAAAAAGCTATGAAATCA  Raphanus raphanistrum subsp. landra
FD569876       --> GTCTCCTGGAGAAGAGGAAAAACGTCGTCGTTGAGAAAGCTATGAAATCA  Raphanus sativus cv Early Scarlet Globe
EY941661       --> GTCTCCTGGAGAAGAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA  Raphanus sativus cv Early Scarlet Globe
EX754976       --> GTCTCCTCGAGAAAAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> GTCTCCTCGAGAAAAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> GTCTCCTCGAGAAGAGGAAAAACGCCGTCACTGAGAAAGCTATGAAATCA  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> GTCTCCTCG.........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> GTCTCCTGGAGAAGAGGAAAAACGCCGTCGTTGAGAAAGCTATGAAATCA  Raphanus sativus cv Early Scarlet Globe
EV569263       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569665       --> ..................................................  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN23222        --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EX759170       <-- ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EX900971       <-- ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD983632       <-- ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGAC
FD573987       <-- ......................................ACAGGTGTCGGC
EY926106       <-- .......................................CAGGTGTCGGC
EY937192       <-- ...........................................TGTCGGC
FD967976       <-- ..................................................
FD537335       <-- ..................................................
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD535251       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD971988       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD987614       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGAC
FD569876       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EY941661       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EX754976       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD540933       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
FD558059       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ATCGCCGACATTAGTCTCGAAGTCGACAGGCTCGCCGGACAGGTGTCGGC
EV569263       --> .........................gCAGGCTCGCCGGACAGGTGTCGGC
EV569665       --> .........................gCAGGCTCGCCGGACAGGTGTCGGC
FD570553       --> ..................................................

               601    -    651
UN23222        --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv GSK3-1
EX759170       <-- GTTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- GTTCGAGACGATGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. landra
FD573987       <-- GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus var. oleiformis
EY937192       <-- GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- .TTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX759069       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> GTTCGAGACGGTGATTAATAA.............................  Raphanus sativus var. oleiformis
FD535251       --> GTTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. maritimus
FD971988       --> GTTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> GTTCGAGACGATGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. landra
FD569876       --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
EY941661       --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
EX754976       --> GTTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> GTTCGAGACGGTGATTAATAAAGGAGGTAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> GTTCGGGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus sativus cv Early Scarlet Globe
EV569263       --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. landra
EV569665       --> GTTCGAGACGGTGATTAATAAAGGAGGAAAAGTTGAAGAGAAGAGTCTCG  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               651    -    701
UN23222        --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EX759170       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EX900971       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD983632       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD573987       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EY926106       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EY937192       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD967976       <-- TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD537335       <-- ..........................CAGTTGCTGAGACTTGACGCCATA
FD554033       <-- ..................................................
EX759069       <-- ..................................................
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> ..................................................
FD535251       --> TGAATCTGATTGAGATGTTGATGAATCATTTGCTGAGACTTGACGCCATA
FD971988       --> TGA-TCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD987614       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD569876       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EY941661       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EX754976       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD540933       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
FD558059       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTGAGACTTGACGCCATA
EV569263       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTTAGACTTGACGCCATA
EV569665       --> TGAATCTGATTGAGATGTTGATGAATCAGTTGCTTAGACTTGACGCCATA
FD570553       --> ..................................................

               701    -    751
UN23222        --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EX759170       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EX900971       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD983632       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD573987       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EY926106       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EY937192       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD967976       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD537335       <-- ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD554033       <-- ....CTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EX759069       <-- ...............................AGATGCAGGTGAAAAGAGT
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> ..................................................
FD535251       --> ACTGCTGATGGAGtt...................................
FD971988       --> ACTGCTGATGGAGATGTGAAGCTAA-GAGGAAGATGCAGGga........
FD987614       --> ACTGCTGATGGAGATGTGAA..............................
FD569876       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAG-TGAAAAGAGT
EY941661       --> ACTGCTGATGGAGATGTGAAGCTAAAGAG-AAGATGCAG-TGAAA-GAGT
EX754976       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAG-TGAAA-GAGT
FD540933       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAG-TGAAAAGAGT
FD558059       --> ACTGCTGATGGAGATGTGAAGCTAAAGAG.....................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EV569263       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
EV569665       --> ACTGCTGATGGAGATGTGAAGCTAAAGAGGAAGATGCAGGTGAAAAGAGT
FD570553       --> ..................................................

               751    -    801
UN23222        --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EX759170       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EX900971       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD983632       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD573987       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EY926106       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EY937192       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD967976       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD537335       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD554033       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EX759069       <-- TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD574534       <-- ..................................................
FY450919       <-- ..................................................
EY929753       --> ..................................................
FD535251       --> ..................................................
FD971988       --> ..................................................
FD987614       --> ..................................................
FD569876       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCA............
EY941661       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAct.......
EX754976       --> TCAGACGTACGTTGAAACACTTGATGTC......................
FD540933       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAA-CTCGACCA
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EV569263       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
EV569665       --> TCAGACGTACGTTGAAACACTTGATGTCTTGAAAGTCAAAAACTCGACCA
FD570553       --> ..................................................

               801    -    851
UN23222        --> AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus sativus cv GSK3-1
EX759170       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. landra
FD573987       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus sativus var. oleiformis
EY937192       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus raphanistrum subsp. landra
EX759069       <-- AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> AAAA..............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAAACG  Raphanus sativus cv Early Scarlet Globe
EV569263       --> AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. landra
EV569665       --> AAAAAGTCGACATTAACAAGTCGGTGCGCCACAAACCGCAAACGCAGACG  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               851    -    901
UN23222        --> CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- CAATATCAGCAACGCGATTTGTTATCGT......................  Raphanus sativus cv GSK3-1
EX759170       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGAGGTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus raphanistrum subsp. landra
FD573987       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus sativus var. oleiformis
EY937192       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGAGGTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGAGGTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGAGGTGGAGGA  Raphanus raphanistrum subsp. landra
EX759069       <-- CAATATCAGCAACGCGATTTGTTTTCGTTTGTTGATGAAGAGGTGGAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................................  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATGAAGGGGTGGAGGA  Raphanus sativus cv Early Scarlet Globe
EV569263       --> CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATAAAGGGGTGGAGGA  Raphanus raphanistrum subsp. landra
EV569665       --> CAATATCAGCAACGCGATTTGTTATCGTTTGTTGATAAAGGGGTGGAGGA  Raphanus raphanistrum subsp. landra
FD570553       --> ..................................................  Raphanus sativus cv Early Scarlet Globe

               901    -    951
UN23222        --> GGAGCCTAGGAGGGACTCAGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759170       <-- GGAGCCTAGGAGGGACTCGGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- GGAGCCTAGGAGAGACTCAGGCACGTCGTCCTCTTCGGGCACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- GGAGCCTAGGAGGGACTCAGGCGCGTCGTCCTCTTCGGGTACTCCTGCGA  Raphanus raphanistrum subsp. landra
FD573987       <-- GGAGCCTAGGAGAGACTCAGGCACGTCGCCCTTTTCGGGTACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- GGAGCCTAGGAGAGACTCAGGCACGTCGTCCTCTTTGGGTACTCCAGCGA  Raphanus sativus var. oleiformis
EY937192       <-- GGAGCCTAGGAGAGACTCAGGCACGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- GGAGCCTAGGAGGGACTCGGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- GGAGCCTAGGAGGGACTCGGGCGGGTCGTCCTTTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- GGAGCCTAGGAGGGACTCAGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. landra
EX759069       <-- GGAGCCTAGGAGGGACTCGGGCGGGTTGTCCTTTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- ..........ggaGACTCAGGCACGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- ..................................TCGGGTACTCCAGCGA  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> GGAGCCTAGGAGAGACTCAGGCACGTCGTCCTCTTCGGGCACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe
EV569263       --> GGAGCCTAGGAGGGACTCAGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. landra
EV569665       --> GGAGCCTAGGAGGGACTCAGGCGCGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus raphanistrum subsp. landra
FD570553       --> ..........ggaGACTCAGGCACGTCGTCCTCTTCGGGTACTCCAGCGA  Raphanus sativus cv Early Scarlet Globe

               951    -   1001
UN23222        --> TTGGAACTAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759170       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- TTGGAACTAACAATTGGGAAACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. landra
FD573987       <-- TTGGAACTAACAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- TTGGAACTAACAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus var. oleiformis
EY937192       <-- TTGGAACTAACAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- TTGGAACTAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. landra
EX759069       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGGTAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- TTGGAACTAACAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> TTGGAACTAACAATTGGGAAACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe
EV569263       --> TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. landra
EV569665       --> TTGGAACGAATAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus raphanistrum subsp. landra
FD570553       --> TTGGAACTAACAATTGGGAGACGATGCTTGATTCCACATCGGCGGCTAAG  Raphanus sativus cv Early Scarlet Globe

               1001   -   1051
UN23222        --> GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759170       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- GCGACGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. landra
FD573987       <-- GCGCCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- GCGCCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus var. oleiformis
EY937192       <-- GCGCCGGTTGAAC-GGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- G---------CACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. landra
EX759069       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- GCGCCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- GCACCGGTTGAACCGGTTAAACCGGTCCCCCCAAGATTCAAATGGGAGTT  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> GCga..............................................  Raphanus sativus cv Early Scarlet Globe
EV569263       --> GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. landra
EV569665       --> GCACCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus raphanistrum subsp. landra
FD570553       --> GCGCCGGTTGAACCGGTTAAACCGGTCCCTCCAAGATTCAAATGGGAGTT  Raphanus sativus cv Early Scarlet Globe

               1051   -   1101
UN23222        --> CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
EX900971       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD983632       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD573987       <-- TTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
EY926106       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
EY937192       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD967976       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD537335       <-- TTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD554033       <-- CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
EX759069       <-- TTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD574534       <-- TTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FY450919       <-- CTTCGATTAAGCTAAAATACACTATCATACGTACACGATATATATGTATT
EY929753       --> ..................................................
FD535251       --> ..................................................
FD971988       --> ..................................................
FD987614       --> ..................................................
FD569876       --> ..................................................
EY941661       --> ..................................................
EX754976       --> ..................................................
FD540933       --> ..................................................
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
EV569665       --> CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT
FD570553       --> CTTCGATTAAGCTATAATACACTATCATACGTACACGATAAATATGTATT

               1101   -   1151
UN23222        --> TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTT-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759170       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTATTTC-G  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTT-G  Raphanus raphanistrum subsp. landra
FD573987       <-- TTTTTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTTTG  Raphanus sativus var. oleiformis
EY937192       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTT-G  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- TTTTTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTATTTT-G  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus raphanistrum subsp. landra
EX759069       <-- TTTTTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTATTTT-G  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- TTTTTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569263       --> TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTT-G  Raphanus raphanistrum subsp. landra
EV569665       --> TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTTT-G  Raphanus raphanistrum subsp. landra
FD570553       --> TTTCTCCGATTTCATGTGATTTGTGATTGATCTTGGCAATTTTTTTT--G  Raphanus sativus cv Early Scarlet Globe

               1151   -   1201
UN23222        --> GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
EX900971       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FD983632       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FD573987       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
EY926106       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
EY937192       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FD967976       <-- GTTTGTTTAGAATATTTTTTGTTGGTC.......................
FD537335       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FD554033       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCCCAAA
EX759069       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FD574534       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA
FY450919       <-- GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCCCAAA
EY929753       --> ..................................................
FD535251       --> ..................................................
FD971988       --> ..................................................
FD987614       --> ..................................................
FD569876       --> ..................................................
EY941661       --> ..................................................
EX754976       --> ..................................................
FD540933       --> ..................................................
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> GTTTGTTTAGAA......................................
EV569665       --> GTTTGTTTAG........................................
FD570553       --> GTTTGTTTAGAATATTTTTTGTTGGTCTTCCCTTGAAGTCAATTCACAAA

               1201   -   1251
UN23222        --> TAACAAGGGGAGTTTCAACAAATATAGTTT----T-T--TC---ATCAT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759170       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----C-T--TC---ATCAT-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900971       <-- TAACAAGGGGAGTTTCGACAAATATAGTTT--CTTCT--TC---ATCAT-  Raphanus sativus cv Early Scarlet Globe
FD983632       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----C-T--TC---TTCATA  Raphanus raphanistrum subsp. landra
FD573987       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----T-T--TCTTCATCAT-  Raphanus sativus cv Early Scarlet Globe
EY926106       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT--CTTCT--TC---ATCAT-  Raphanus sativus var. oleiformis
EY937192       <-- TAACAAGGGGAGTTTCAACAAATATAGTTTCTTCT-TCATC---ATCAT-  Raphanus sativus cv Early Scarlet Globe
FD967976       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537335       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----T-T--TC---ATCAT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554033       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----C-C--TC---ATCAT-  Raphanus raphanistrum subsp. landra
EX759069       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----T-T--TC---ATCAT-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD574534       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----T-T--TCTTCATCAT-  Raphanus sativus cv Early Scarlet Globe
FY450919       <-- TAACAAGGGGAGTTTCAACAAATATAGTTT----C-T--TC---ATCAT-  Raphanus sativus cv GSK3-1
EY929753       --> ..................................................  Raphanus sativus var. oleiformis
FD535251       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD971988       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD987614       --> ..................................................  Raphanus raphanistrum subsp. landra
FD569876       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY941661       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754976       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540933       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558059       --> ..................................................  Raphanus raphanistrum subsp. landra
EY908614       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907697       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX897159       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV569263       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569665       --> ..................................................  Raphanus raphanistrum subsp. landra
FD570553       --> TAACAAGGGGAGTTTCAACAAATATAGTTT--CTTCT--TC---ATCAT-  Raphanus sativus cv Early Scarlet Globe

               1251   -   1301
UN23222        --> -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- -CATCATAATCCCATCATTGTAATACCTAAAGATATTTGGATTTTCTTTA
EX900971       <-- -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
FD983632       <-- TCATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
FD573987       <-- -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
EY926106       <-- -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
EY937192       <-- -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
FD967976       <-- ..................................................
FD537335       <-- -CATCATAATCCCATCATTGTAATACCTAAAGATATTTGGATTTTCTTTA
FD554033       <-- -CATCATAATCCCGTCATTGTAATACCTAAAGAT--TTGAATTTTCTTTA
EX759069       <-- -CATCATAATCCCATCATTGTAATACCTAAAGATATTTGGATTTTCTTT.
FD574534       <-- -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA
FY450919       <-- -CATCATAATCCCGTCATTGTAATACCTAAAGAT--TTGAATTTTCTTTA
EY929753       --> ..................................................
FD535251       --> ..................................................
FD971988       --> ..................................................
FD987614       --> ..................................................
FD569876       --> ..................................................
EY941661       --> ..................................................
EX754976       --> ..................................................
FD540933       --> ..................................................
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> -CATCATAATCCCATCATTGTAATACCTAAAGAT--TTGGATTTTCTTTA

               1301   -   1351
UN23222        --> CTAATACAATAAAAGTTACGGAAAAGTTGTAATAGTTTTATGAAATATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY431176       <-- ..................................................
EX759170       <-- CTAATACAGTAAAAGTTACG..............................
EX900971       <-- CTAATACAATAAAAGTTACG..............................
FD983632       <-- CTAATACAATAAAAGTT.................................
FD573987       <-- CTAATACAATAAAAGTTACGG.............................
EY926106       <-- CTAATACAATAAAAGTTACt..............................
EY937192       <-- CTAATACAATAAAAGTTACGG.............................
FD967976       <-- ..................................................
FD537335       <-- CTAATACAGTAAA-GTTACG..............................
FD554033       <-- CTAATACAATAAAAGTTACGG.............................
EX759069       <-- ..................................................
FD574534       <-- CTAATACAATAAAAGTTACGG.............................
FY450919       <-- CTAATACAATAAAAGTTACGGAAAAGTTGTAATAGTTTTATGAAATATTT
EY929753       --> ..................................................
FD535251       --> ..................................................
FD971988       --> ..................................................
FD987614       --> ..................................................
FD569876       --> ..................................................
EY941661       --> ..................................................
EX754976       --> ..................................................
FD540933       --> ..................................................
FD558059       --> ..................................................
EY908614       --> ..................................................
EY907697       --> ..................................................
EX897159       --> ..................................................
EV569263       --> ..................................................
EV569665       --> ..................................................
FD570553       --> CTAATACAATAAAAGTTACGG.............................

               1351   -   1401
UN23222        --> GCTT
                   ~~~~
FY431176       <-- ....
EX759170       <-- ....
EX900971       <-- ....
FD983632       <-- ....
FD573987       <-- ....
EY926106       <-- ....
EY937192       <-- ....
FD967976       <-- ....
FD537335       <-- ....
FD554033       <-- ....
EX759069       <-- ....
FD574534       <-- ....
FY450919       <-- GCTT
EY929753       --> ....
FD535251       --> ....
FD971988       --> ....
FD987614       --> ....
FD569876       --> ....
EY941661       --> ....
EX754976       --> ....
FD540933       --> ....
FD558059       --> ....
EY908614       --> ....
EY907697       --> ....
EX897159       --> ....
EV569263       --> ....
EV569665       --> ....
FD570553       --> ....