RadishBase

| | | |
Alignment for radish unigene UN23230

               1      -     51
UN23230        --> AAACTCAAAAATGTGATCAGCATTGACTATAGAAAGCAAAAACAAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ...............................GAAAGCAAAAACAAAGTTT
FY429640       <-- .................................................T
EW732067       <-- ..................................................
FY430490       <-- ..................................................
FD577050       <-- ..................................................
FD980807       <-- ..................................................
EY916186       <-- ..................................................
EW733439       <-- ..................................................
FD533952       <-- ..................................................
FD548962       <-- ..................................................
FD982036       <-- ..................................................
FD938550       <-- ..................................................
EV544314       --> AAACTCAAAAATGTGATCAGCATTGACTATAGAAAGCAAAAACAAAGTTT
FD976642       --> AAACTCAAAAATGTGATCAGCATTGACTATAGAAAGCAAAAACAAAGTTT
FD934898       --> ..............ggTCAACATGGATTATAGAAAGCAAAA-CAAAGTTT
EW736714       --> ..............................AGAAAGCAAAAACAAAGTTT
EW737959       --> ..............................AGAAAGCAAAAACAAAGTTT
FD977686       --> ..............................AGAAAGCAAAAACAAAGTTT
EY917514       --> ...............................GAAAGCAAAAACAAAGTTT
FD545080       --> ...............................GAAAGCAAAAACAAAGTTT
FD581427       --> ..............................gGAAAGCAAAAACAAAGTTT
FD529998       --> ...............................ggAAGCAAAAACAAAGTTT

               51     -    101
UN23230        --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FY429640       <-- ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
EW732067       <-- .......................TAAGATCACACGGTCAAAACAAA-CAC
FY430490       <-- ..................................................
FD577050       <-- ..................................................
FD980807       <-- ..................................................
EY916186       <-- ..................................................
EW733439       <-- ..................................................
FD533952       <-- ..................................................
FD548962       <-- ..................................................
FD982036       <-- ..................................................
FD938550       <-- ..................................................
EV544314       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD976642       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD934898       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
EW736714       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
EW737959       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD977686       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
EY917514       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD545080       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD581427       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC
FD529998       --> ATTAATCAAAGCCTATATTCGACTAAGATCACACGGTCAAAACAAAACAC

               101    -    151
UN23230        --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FY429640       <-- GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
EW732067       <-- GACTCAGATCCAAA-C-AAACTATGAAATGG--GAGAGAAAAA-GGGAGG
FY430490       <-- ............................TGGGGAAGAGAAAAAAGGGAGG
FD577050       <-- ............................................GGGAGG
FD980807       <-- ..................................................
EY916186       <-- ..................................................
EW733439       <-- ..................................................
FD533952       <-- ..................................................
FD548962       <-- ..................................................
FD982036       <-- ..................................................
FD938550       <-- ..................................................
EV544314       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FD976642       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAAAAAAAAGGGAGG
FD934898       --> GACTCAAATCCAAAACAAAACTATGAAATGGGGAAGAAAAAAAAGGGAGG
EW736714       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
EW737959       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FD977686       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAAAAAAAAGGGAGG
EY917514       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FD545080       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FD581427       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG
FD529998       --> GACTCAGATCCAAAACAAAACTATGAAATGGGGAAGAGAAAAAAGGGAGG

               151    -    201
UN23230        --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FY429640       <-- CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
EW732067       <-- CATTCATCAGTTCATC-T-CTGACAAGCTCGT-GATGAAAT-CTCTCTGT
FY430490       <-- CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD577050       <-- CATTCATCAGTTCATCCTC-TGACAAGCTCGTTGATGAAATTCTCTCTGT
FD980807       <-- ..................................................
EY916186       <-- ..................................................
EW733439       <-- ..................................................
FD533952       <-- ..................................................
FD548962       <-- ..................................................
FD982036       <-- ..................................................
FD938550       <-- ..................................................
EV544314       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD976642       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD934898       --> CAT-CATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
EW736714       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
EW737959       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD977686       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
EY917514       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD545080       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD581427       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT
FD529998       --> CATTCATCAGTTCATCCTCCTGACAAGCTCGTTGATGAAATTCTCTCTGT

               201    -    251
UN23230        --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- TTCCAGCATCACCACCTTCGACGTAGTGGTTTCTCTTCTTCTTAAGGCCA  Raphanus raphanistrum subsp. landra
FY429640       <-- TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv GSK3-1
EW732067       <-- TTCCAGCATCACCAC-TTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv GSK3-1
FD577050       <-- TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- ...................AACGTAGTGGTTCCTCTTCTTCTTGAGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- .................................TCTTCTTCTTGAGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD548962       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- ..................................................  Raphanus sativus var. oleiformis
EV544314       --> TTCCAGCATCACCACCTTCGACGTAGTGGTTTCTCTTCTTCTTAAGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> TTCCAGCATCACCACCTTCGACGTAGTGGTTTCTCTTCTTCTTAAGGCCA  Raphanus sativus var. oleiformis
EW736714       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> TTCCAGCATCACCACCTTCGACGTAGTGGTTTCTCTTCTTCTTAAGGCCA  Raphanus raphanistrum subsp. landra
FD545080       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> TTCCAGCATCACCACCTTCAACGTAGTGGTTCCTCTTCTTCTTGAGGCCA  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> TTCCAGCATCACCACCTTCGGCGTAGTGGTTTCTCTTCTTCTTAAGGCCA  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN23230        --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- CCGAGTGGTGCCTTCAACTGGAACGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. landra
FY429640       <-- CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus sativus cv GSK3-1
EW732067       <-- CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGAAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus sativus cv GSK3-1
FD577050       <-- CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- CCGAGTGGTGC-TTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- CCGAGTGGTGCCTTCAACTGGAATGACCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- .............TCAACTGGAATGGCCAAAGAAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- ...............AACTGGAACGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. maritimus
FD548962       <-- ...............AACTGGAATGGCCAAAGGAAGTTGTTGGCT-CCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- ................ACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- ..................................................  Raphanus sativus var. oleiformis
EV544314       --> CCGAGTGGTGCCTTCAACTGGAACGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus sativus var. oleiformis
EW736714       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGAAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGAAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> CCGAGTGGTGCCTTCAACTGGAACGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. landra
FD545080       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> CCGAGTGGTGCCTTCAACTGGAATGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> CTGAGTGGTGCCTTCAACTGGAACGGCCAAAGGAAGTTGTTGGCTTCCTT  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN23230        --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FY429640       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
EW732067       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FY430490       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD577050       <-- GAAGTGAGGTCCAACTGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD980807       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
EY916186       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCCACGCAGA
EW733439       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD533952       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD548962       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCCACGCAGA
FD982036       <-- GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD938550       <-- .AAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
EV544314       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAAA
FD976642       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD934898       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGAC.....
EW736714       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
EW737959       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD977686       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
EY917514       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD545080       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCCACGCAGA
FD581427       --> GAAGTGAGGTCCAACTGTCATGATCTCGTGGATCAGATCCTCGACGCAGA
FD529998       --> GAAGTGAGGTCCAACGGTCATGATCTCGTGGATCAGATCCTCGACGCAGA

               351    -    401
UN23230        --> TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- TGATGTTGTGCTTTCCTc................................  Raphanus raphanistrum subsp. landra
FY429640       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv GSK3-1
EW732067       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv GSK3-1
FD577050       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. maritimus
FD548962       <-- TGATGTTGTGCTTTCCTAGAGATTCATTCACTATGGAGTTGTCAGTAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATTGAGTTGTCAGTGAGT  Raphanus sativus var. oleiformis
EV544314       --> TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> TGATGTTGTGCTTTCCTc................................  Raphanus raphanistrum subsp. landra
FD545080       --> TGATGTTGTGCTTTCCTAGAGATTCATTCACTATGGAGTTGTCAGTAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> TGATGTTGTGCTTTCCCAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> TGATGTTGTGCTTTCCTAGAGCTTCATTCACTATGGAGTTGTCAGTGAGT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN23230        --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EW732067       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FY430490       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD577050       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD980807       <-- ACTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EY916186       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EW733439       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD533952       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD548962       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD982036       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD938550       <-- GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EV544314       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGACTAGCTC
FD976642       --> ACTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD934898       --> ..................................................
EW736714       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EW737959       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD977686       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
EY917514       --> ..................................................
FD545080       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD581427       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC
FD529998       --> GCTATCCTCTGGTGGTTCAGCTTTCCAAAACCCCTCTTGTAGATTAGCTC

               451    -    501
UN23230        --> CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY429640       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv GSK3-1
EW732067       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv GSK3-1
FD577050       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- CTTCACACTCTTCAAGTTCGGGTATCCGTAAGTAACGTAAGGCTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- CTTAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- CTTAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. maritimus
FD548962       <-- CTTAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- CTTCACACTCTTCAAGTTCGGGTATCCGTAAGTAACGTAAGGCTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus var. oleiformis
EV544314       --> CTCAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> CTTCACACTCTTCAAGTTCGGGTATCCGTAAGTAACGTAAGGCTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> CTTCACACTCTTCAAGTTCGGGTATCCGTAAGTAACGTAAGGCTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545080       --> CTTAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> CTTAACACTCTTCAAGTTTGGGTATCCGTAAGTCACGTAAGGCTCAACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> CTTAACACTCTTCAAGTTTGGGTACCCGTAAGTCACGTAAGGTTCAACAC  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN23230        --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
EW732067       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGGACACACCATTG
FY430490       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD577050       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD980807       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACGCCATTG
EY916186       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
EW733439       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGGACACACCATTG
FD533952       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD548962       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD982036       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACGCCATTG
FD938550       <-- GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
EV544314       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD976642       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACGCCATTG
FD934898       --> ..................................................
EW736714       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGGACACACCATTG
EW737959       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGGACACACCATTG
FD977686       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACGCCATTG
EY917514       --> ..................................................
FD545080       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD581427       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG
FD529998       --> GACGCAACATGTTGATTGTTGCCTTGTTCACCTTAAGGAACACACCATTG

               551    -    601
UN23230        --> AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY429640       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv GSK3-1
EW732067       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv GSK3-1
FD577050       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- AAGATTTGTCTCAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. maritimus
FD548962       <-- AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- AAGATTTGTCTCAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus var. oleiformis
EV544314       --> AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> AAGATTTGTCTCAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> AAGATTTGTCTCAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545080       --> AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> AAGATTTGTCTTAAACGCAAGAGCTGCAGAATCTTCTTGGTTTTTGGGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> AAGATTTGTCTTAAACGCAAGAGCTGAAGAATCTTCTTGGTTTTTGGGTC  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN23230        --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
EW732067       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FY430490       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD577050       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD980807       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
EY916186       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTGGCCTCAG
EW733439       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD533952       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD548962       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTGGCCTCAG
FD982036       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTCGCCTCAG
FD938550       <-- AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
EV544314       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD976642       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD934898       --> ..................................................
EW736714       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
EW737959       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD977686       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTCGCCTCAG
EY917514       --> ..................................................
FD545080       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTGGCCTCAG
FD581427       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG
FD529998       --> AATAGCGTTGATTCCACGGATACGAATGATAAAGAGCAATTTAGCCTCAG

               651    -    701
UN23230        --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EW732067       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FY430490       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD577050       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD980807       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EY916186       <-- GGTCAACATAGAATCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EW733439       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD533952       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD548962       <-- GGTCAACATAGAATCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD982036       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD938550       <-- GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EV544314       --> GGTCAACATAGAACCCTCCTTTCAACTTGGCCTCACGCTTCAAACGGATC
FD976642       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD934898       --> ..................................................
EW736714       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EW737959       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD977686       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
EY917514       --> ..................................................
FD545080       --> GGTCAACATAGAATCCTCCTTTCAAC........................
FD581427       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC
FD529998       --> GGTCAACATAGAACCCTCCTTTCAACTTAGCCTCACGCTTCAAACGGATC

               701    -    751
UN23230        --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY429640       <-- AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv GSK3-1
EW732067       <-- AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv GSK3-1
FD577050       <-- AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- AACTCATTGTCCTTCTCGGCGTATTCTTTAGCGTATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. maritimus
FD548962       <-- AACTCATTGTCCTTCTCGGCG-ATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- AACTCATTGTCCTTCTCGGCGTATTCTTTAGCGTATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus var. oleiformis
EV544314       --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCGTATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> AACTCATTATCCTTCTCGGCGTATTCTTTGGCATACTGCTCAGCCCTCTT  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCGTATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545080       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> AACTCATTGTCCTTCTCGGCGTATTCTTTAGCATATTGCTCAGCTCTTTT  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN23230        --> GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
EW732067       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FY430490       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD577050       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD980807       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
EY916186       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
EW733439       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD533952       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD548962       <-- GAAGATGAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD982036       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCCTCTTAGCAGCTGCAGCTT
FD938550       <-- GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
EV544314       --> GAAGATAAGCTTCCTGGTCTCAACA.........................
FD976642       --> GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD934898       --> ..................................................
EW736714       --> GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
EW737959       --> GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD977686       --> GAAGATAAGCTTCCTGGTCT..............................
EY917514       --> ..................................................
FD545080       --> ..................................................
FD581427       --> GAAGATAAGCTTCCTGGTCTCAACACTCTTCTTCTTAGCAGCTGCAGCTT
FD529998       --> GAAG..............................................

               801    -    851
UN23230        --> CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY429640       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv GSK3-1
EW732067       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv GSK3-1
FD577050       <-- CCTGTTTCTTAGTCAATGCCCc............................  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- CCTGTTTCTTGGTCAATGCCCATTCCTCTTCCCTCTTGATCTTCTTTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- CCTGTTTCTTGGTCAATGCCCATTCCTCTTCTCTCTTGATCTTCTTTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus raphanistrum subsp. maritimus
FD548962       <-- CCTGTTTCTTGGTCAATGCCCATTCCTCTTCTCTCTTGATCTTCTTTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- CCTGTTTCTTGGTCAATGCCCATTCCTCTTCCCTCTTGATCTTCTTTAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus var. oleiformis
EV544314       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> CCTGTTcttggtcatg..................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> CCTGTTTCTTAGCCAATGCCCATTCCTCCTCCCTCTTGATCTTCTTTAGC  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545080       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> CCTGTTTCTTAGTCAATG................................  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN23230        --> ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY429640       <-- ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTT-GAGAGGA  Raphanus sativus cv GSK3-1
EW732067       <-- ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus sativus cv Rat-Tail Radish #3870
FY430490       <-- ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus sativus cv GSK3-1
FD577050       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980807       <-- ACAGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916186       <-- ACAGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733439       <-- ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD533952       <-- GCAGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus raphanistrum subsp. maritimus
FD548962       <-- ACAGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982036       <-- ACAGACTCTGAAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD938550       <-- ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus sativus var. oleiformis
EV544314       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD976642       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD934898       --> ..................................................  Raphanus sativus var. oleiformis
EW736714       --> ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTGAGAGGA  Raphanus sativus cv Rat-Tail Radish #3870
EW737959       --> ACTGACTCTGGAACCACCACCTTGGATTCAGCCATTTCTCTTTG......  Raphanus sativus cv Rat-Tail Radish #3870
FD977686       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY917514       --> ..................................................  Raphanus raphanistrum subsp. landra
FD545080       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD581427       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD529998       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN23230        --> AGTGAGATAGAGAGCGCGGCGCGGAATGGAAGAAGAAAGACAAATGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY921352       <-- ..................................................
FY429640       <-- AG................................................
EW732067       <-- AGTGAGATAGAGAGCGCGGCGCGGAATGG.....................
FY430490       <-- AGTGAGAT-GAGAGCGCGcgc.............................
FD577050       <-- ..................................................
FD980807       <-- AGTGAGATAGAGCGCGCGGCGCGGAATGGAAGAAGGAAGACAAATGAGTC
EY916186       <-- AGTGAAATAGAGAGCGCGGCGCcc..........................
EW733439       <-- AGTGAGATAGAGAGCGCGGCGCGGAATGGAAGAAGAAAGACAAATGAGTC
FD533952       <-- AGTGAGATAGAGCGCGCGGCGCGGAATGGAAGGAGAAAGACAAATGAGTC
FD548962       <-- AGTGAGATAGAGAGCGCGGCGCGGAATGGAAGAAGAAAGACAAATGAGTC
FD982036       <-- AGTGAGATcc........................................
FD938550       <-- AGTGAGATAGAGAGCGCGGCGCGGAATGGAAGAAGAAAGACAAATGAGTC
EV544314       --> ..................................................
FD976642       --> ..................................................
FD934898       --> ..................................................
EW736714       --> AGTGAGATAGAGAGCGCGGCGCGGAATGGAgag.................
EW737959       --> ..................................................
FD977686       --> ..................................................
EY917514       --> ..................................................
FD545080       --> ..................................................
FD581427       --> ..................................................
FD529998       --> ..................................................

               951    -   1001
UN23230        --> CC
                   ~~
EY921352       <-- ..
FY429640       <-- ..
EW732067       <-- ..
FY430490       <-- ..
FD577050       <-- ..
FD980807       <-- CC
EY916186       <-- ..
EW733439       <-- C.
FD533952       <-- ..
FD548962       <-- C.
FD982036       <-- ..
FD938550       <-- C.
EV544314       --> ..
FD976642       --> ..
FD934898       --> ..
EW736714       --> ..
EW737959       --> ..
FD977686       --> ..
EY917514       --> ..
FD545080       --> ..
FD581427       --> ..
FD529998       --> ..