RadishBase

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Alignment for radish unigene UN23273

               1      -     51
UN23273        --> ATCATCGAACTATGATCTAAAGTAAACTAATTTAATTTGTGATAAAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ATCATCGAACTATGATCTAAAGTAAACTAATTTAATTTGTGATAAAACTG
EX760390       --> ......................................GTGATAAAACTG
EY903890       --> ...........................................AAAACTG
EX775679       --> .................................................G
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               51     -    101
UN23273        --> TGATTAAATTGTTAATGCAACCTAAGTTACATCATTCACAGTAACACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> CGATTAAATTGTTAATGCAACCTAAGTTACATCATTCACAGTAACACATT
EX760390       --> TGATTAAATTGTTAATGCAACCTAAGTTACATCATTCACAGTAACACATT
EY903890       --> TGATTAAATTGTTAATGCAACCTAAGTTACATCATTCACAGTAACACATT
EX775679       --> TGATTAAATTGTTAATGCAACCTAAGTTACATCATTCACAGTAACACATT
FY435994       --> ................tgcACCTAAGTTACATCATTCGCAGTAACACATT
EV541284       --> ...................................cCACAGTAACACATT
EV541457       --> ....................................CACAGTAACACATT
FD537883       --> ....................................CACAGTAACACATT
FD537124       --> ....................................cgCAGTAACACATT
FD554129       --> ..................................................
EY904607       --> ..................................................

               101    -    151
UN23273        --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
EX760390       --> ATTCAATTTATTGAAAAATAACAACAATTATTCCGGAAGCTAGACGCCAT
EY903890       --> ATTCAATTTATTGAAAAATAACAACAATTATTCCGGAAGCTAGACGCCAT
EX775679       --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
FY435994       --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
EV541284       --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
EV541457       --> ATTCAATTTATAGAAAAATAACAACAATTATTCCGGAAGCTAAACGCCAT
FD537883       --> ATTCAATTTATTGAAAAATAACAACAATTATTCCGGAAGCTAGACGCCAT
FD537124       --> ATTCAATTTATTGAAAAATAACAACAATTATTCCGGAAGCTAGACGCCAT
FD554129       --> .................................CGGAAGCTAAACGCCAT
EY904607       --> ..................................................

               151    -    201
UN23273        --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EX760390       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EY903890       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EX775679       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
FY435994       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EV541284       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EV541457       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
FD537883       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
FD537124       --> CAAATGTTTGAACACAACAAGAGATCTTTACT---ATGCAAATAAACTCT
FD554129       --> CAAATGTTTGAACACAACAAGAGATCTTTACTGTCATGCAAATAAACTCT
EY904607       --> .........GAACACAACAAGAGATTTTTACTGTCATGCAAATAAACTCT

               201    -    251
UN23273        --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> CAACTCCAACAAGA---CAATGTTGGTGGAACCCTTCCTCTCTAGATACC
EX760390       --> CAACTCCAACAAGAAGACACTGTTGGTGAAACCCTTCCTCTCTAGATACC
EY903890       --> CAACTCCAACAAGAAGACACTGTTGGTGAAACCCTTCCTCTCTAGATACC
EX775679       --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
FY435994       --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
EV541284       --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
EV541457       --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
FD537883       --> CAACTCCAACAAGAAGACACTGTTGGTGAAACCCTTCCTCTCTAGATACC
FD537124       --> CAACTCCAACAAGAAGACACTGTTGGTGAAACCCTTCCTCTCTAGATACC
FD554129       --> CAACTCCAACAAGAAGACAATGTTGGTGAAACCCTTCCTCTCTAGATACC
EY904607       --> CAACTCCAACAAGAAAACACTGTTGGTGAAACCCTTCCTCTCTAGATACC

               251    -    301
UN23273        --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
EX760390       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
EY903890       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
EX775679       --> TTTCTCAAGCATTGCTCTAACTCTCATAGGAAGCCCATAGAGACGAATAA
FY435994       --> TTTCTCAAGCATCGCTCTAACTCTCATAGGAAGCCCATAGAGACGAATAA
EV541284       --> TTTCTCAAGCATCGCCCTAACTCTCATAGGAAGCCCATAGAGACGAATAA
EV541457       --> TTTCTCAAGCATCGCCCTAACTCTCATAGGAAGCCCATAGAGACGAATAA
FD537883       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
FD537124       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA
FD554129       --> TTTCTCAAGCATTGCTCTAACTCTCATAGGAAGCCCATAGAGACGAATAA
EY904607       --> TTTCTCAAGCATCGCCCTAACTCTCATGGGAAGCCCATAGAGACGAATAA

               301    -    351
UN23273        --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- .....GCTGCATCCGCTTGGTTGTAA-TCTCACTCC-TTCAAACGAAGAT
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAAAT
EX760390       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
EY903890       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAAAT
EX775679       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
FY435994       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
EV541284       --> ACCCTGCAGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAAAT
EV541457       --> ACCCTGCAGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAAAT
FD537883       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
FD537124       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
FD554129       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAGAT
EY904607       --> ACCCTGCTGCATCCGCTTGGTTGTAAATCTCACTCCCTTCAAACGAAAAT

               351    -    401
UN23273        --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ATGTCT-GCCTGTACAGACTGTTCGGACTCTTACGCCC-GTCACCGACAC
EV568462       <-- ..............CAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
FD970756       <-- ...............................................CAC
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ATGTCCTGTCTGTACAGACTGTTCGGACTCTTACGCCCTGTCACCGACAC
EX760390       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
EY903890       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
EX775679       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCC-GTCACCGACAC
FY435994       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
EV541284       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
EV541457       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
FD537883       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
FD537124       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC
FD554129       --> ATGTCTTGCCTGTACAGACTGTTCGGACGCTTACGCCCCGTCACCGACAC
EY904607       --> ATGTCTTGCCTGTACAGACTGTTCGGACTCTTACGCCCCGTCACCGACAC

               401    -    451
UN23273        --> GGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTCGGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTAGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- GGATCCTTTTTACAGCTTCAGCGTAACGGATCCAGTGGTTT-CTCGGTTA  Raphanus raphanistrum subsp. landra
FD970756       <-- AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- ..........................................CTCGGTTA  Raphanus raphanistrum subsp. landra
EX888845       <-- ..................................................  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> GGATCCTTTGTACAGCTTCAGCGTAACGGATCCAGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> GGATCCTTTGTACAGCTTCAGCGTAACGGATCCAGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. landra
FY435994       --> GGATCCTTTGTACAGCTTCAGCGTAACTGATCCAGTGGTTTTCTCGGTTA  Raphanus sativus cv GSK3-1
EV541284       --> GGATCCTTTGTACAGCTTCAGCGTAACTGATCCAGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> GGATCCTTTGTACAGCTTCAGCGTAACTGATCCAGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> AGATCCTTTGTACAGCTTCAGCGTAACTGATCCGGTGGTTTTCTAGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> GGATCCTTTGTACAGCTTCAGCGTAACGGATCCAGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. landra
EY904607       --> AGATCCTTTGTACAGCTTCAGCGTAACTGATTCGGTGGTTTTCTCGGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN23273        --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- ACTTCTCCATGAATGCGTCCATGGACTCCTTAAGCGGATCAAACCATCTT  Raphanus raphanistrum subsp. landra
FD970756       <-- ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- ACTTCTCCATGAATGCGTCCATGGGCTC-TTAAGCGGATCAAACCATCTT  Raphanus raphanistrum subsp. landra
EX888845       <-- ..................................................  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> ACTTCTCCATGAAAGCGTCCCTGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> ACTTCTCCATGAATGCGTCCATGGACTCCTTAAGCGGATCAAACCATCTT  Raphanus raphanistrum subsp. landra
FY435994       --> ACTTCTCCATGAATGCGTCCATGGACTCCTTAAGCGGATCAAACCATCTT  Raphanus sativus cv GSK3-1
EV541284       --> ACTTCTCCATGAATGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> ACTTCTCCATGAATGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ACTTCTCCATGAATGCGTCCATGGGCTCCTTAAGCGGATCAAACCATCTT  Raphanus raphanistrum subsp. landra
EY904607       --> ACTTCTCCATGAAAGCGTCCATGGACTCCTTAAGCGGATCAAACCACCTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN23273        --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- CCCGCGTAGACCATCTCTGCGTATTTCAGAGCTAACGAGTCTTTCACCAG  Raphanus raphanistrum subsp. landra
FD970756       <-- CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- CCCGCGTAGACCCTCTCTGCGTATTTCAGAGCTGACGAGTCTTTCACCTG  Raphanus raphanistrum subsp. landra
EX888845       <-- ..................................................  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> CCCGCGTAAACCATCTCTGCGTATTTCAAAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> CCCGCGTAGACCATCTATGCGTATTTCAGAGCTAACGAGTCTTTCACCTG  Raphanus raphanistrum subsp. landra
FY435994       --> CCCGCGTAGACCATCTCTGCGTATTTCAGAGCTAACGAGTCTTTCACCTG  Raphanus sativus cv GSK3-1
EV541284       --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAACGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> CCCGCGTAAACCATCTCTGCGTATTTCAAAGCTAACGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> CCCGCGTAAACCATCTCTGCGTATTTCAGAGCTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> CCCGCGTAGACCCTCTCTGCGTATT.........................  Raphanus raphanistrum subsp. landra
EY904607       --> CCCGCGTAAACCATCTCCGCGTATTTCAAAACTAATGAGTCTTTCACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN23273        --> AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- AATGCTCTCCCTGTCTAGAGTGAGCGATTCTAGCTCCTGCACGGCTGCAA  Raphanus raphanistrum subsp. landra
FD970756       <-- AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- AATGCTCTCCCTGTCTAGAGTGAGCGATTCTAGCTCCTGCACGGCTGCAA  Raphanus raphanistrum subsp. landra
EX888845       <-- ..................................................  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> AATGCTTTCTCTGTCTAGAGTGAGTGATTCTAACTCC.............  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> AATGCTCTCCCAGTCTAGAGTGAGCGATTCTAGCTCCTGCACGGCTGCAC  Raphanus raphanistrum subsp. landra
FY435994       --> AATGCTCTCTCTGTCTAGAGTGAGTGATTCTAGCTCCTGCACAGCTGCAA  Raphanus sativus cv GSK3-1
EV541284       --> AATGCTTTCTCTGTCTAGAGTGAGTGATTCTAACTCCTGCACGGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> AATGCTTTCTCTGTCTAGAGTGAGTGATTCTAACTCCTGCACGGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> AATGCTCTCTCTGTCTAGAGTGAG--ATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> AATGCTCTCTCTGTCTAGAGTGAGCGATTCTAACTCCTGCACAGCTGCAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN23273        --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- AGAGGATGGTGCCTCCCGGGGTTTCGTAGACACCGCGTGACTTCATCCCA  Raphanus raphanistrum subsp. landra
FD970756       <-- AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- AGAGGATGGTGCCTCCCGGGGTTTCGTAGACACCGCGTGACTTCATCCCA  Raphanus raphanistrum subsp. landra
EX888845       <-- ..................................................  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTT.......  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> AGAGGATGGTGCCTCCCGGGGTTTCGTAGACACCGCGTGACTTCATCCCA  Raphanus raphanistrum subsp. landra
FY435994       --> AGAGGATGGTGCCTCCCGGGGTTTCGTAGACACCGCGTGACTTCATCCCA  Raphanus sativus cv GSK3-1
EV541284       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAAACACCACGTGACTTCATCCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAGACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> AGAGGATGGTGCCTCCTGGGGTTTCGTAAACACCACGTGACTTCATCCCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN23273        --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
EV568462       <-- ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
FD970756       <-- ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
FD558180       <-- ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
EX888845       <-- ..................................................
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ..................................................
EX760390       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
EY903890       --> ..................................................
EX775679       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
FY435994       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
EV541284       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCAATGCCGTGTTTCCCTCC
EV541457       --> ACCAGACGGTTCTCCACCATGTAGATCCGGCCAATGCCGTGTTTCCCTCC
FD537883       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
FD537124       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC
FD554129       --> ..................................................
EY904607       --> ACCAGACGGTTCTCCACCATGTCGATCCGGCCGATGCCGTGTTTCCCTCC

               701    -    751
UN23273        --> TATTGTGTTTAGCTCAGAGAGAAGGGTTGCTGGAGAGAGTGCCTTCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- TATTGTGTTTAGCTCGGAGAGAAGGGTAGCTGGAGAGAGTGCCTTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- TATTGTGTTTAGCTCAGAGAGAAGGGTTGCTGGAGAGAGAGCCTTCCCGT  Raphanus raphanistrum subsp. landra
FD970756       <-- TATTGTGTTTAGCTCGGAGAGAAGGGTAGCTGGAGAGAGTGCCTTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- TATTGTGTTTAGCTCAGAGAGAAGGGTTGCTGGAGAGAGAGCCTTCCCGT  Raphanus raphanistrum subsp. landra
EX888845       <-- ...TGTGTTTAGCTCAGAGAGAAGGGTTGCTGGAGAGAGAGCCTTCCCGT  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> TATTGTGTTTAGCTCGGAGAGAAGGGTAGCTGGAGAGAGTGCCTTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> TATTGTGTTTAGCTCAGAGA..............................  Raphanus raphanistrum subsp. landra
FY435994       --> TATTGTGTTTAGCTCAGAGAGAAGGGTTGCTGGAGAGAGAGCCTTCCCGT  Raphanus sativus cv GSK3-1
EV541284       --> TATTGTGTTTAGCTC...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> TATTGTGTTTAGCTC...................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> TATTGTGTTTAGCT....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> TATTGTGTTTAGCTCGGAGAGAAGGGTAGCTGGAGAGAGTGCCTTCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> TATTGTGTTTAGCTCggaaa..............................  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN23273        --> TTAGTGCCACTGGTAGTCCGGATTCTATCCCGATCTCAATGTATTCAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- TGAGTGCCACTGGTAGTCCAGATTCTATCCCGATCTCGATGTATTCAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- TTAGTGCCACTGGAAGTCCGGATTCTATCCCGATCTCAATGTATTCAGGC  Raphanus raphanistrum subsp. landra
FD970756       <-- TGAGTGCCACTGGTAGTCCAGATTCTATCCCGATCTCGATGCATTCAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- TTAGTGCCACTGGAAGTCCGGATTCTATCCCGATCTCAATGTATTCAGGC  Raphanus raphanistrum subsp. landra
EX888845       <-- TTAGTGCCACTGGAAGTCCGGATTCTATCCCGATCTCAATGTATTCAGGC  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> TGAGTGCCACTGGTAGTCCAGATTCTATCC....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> ..................................................  Raphanus raphanistrum subsp. landra
FY435994       --> TTAGTGCCACTGGAAGTCCGGATTCTATCCCGATCTCAATGTATTCAGGC  Raphanus sativus cv GSK3-1
EV541284       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> TGAGTGCCACTGGTAGTCCAGATTCTATCCCGATCTCGATGTATTCAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN23273        --> TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTTTCTT  Raphanus raphanistrum subsp. landra
FD970756       <-- TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTTTCTT  Raphanus raphanistrum subsp. landra
EX888845       <-- TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTTTCTT  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> ..................................................  Raphanus raphanistrum subsp. landra
FY435994       --> TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTTTCTT  Raphanus sativus cv GSK3-1
EV541284       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> TGATCAGGAGCATCTTCGGGGTCTACACTCATCATGTACATATCTCTCTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN23273        --> GGGCTCGTTAGCTGGATCTTCCAATATATCACCCTCGTGACTAAGGTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- GGGCTCGTTTGCTGGATCTTCCAATATATCACCCTCGCGACTAAGGTGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568462       <-- GGGCTCGTTAGCTGGATCTTCCAATATATCACCCTCGTGACTAAGGTGCC  Raphanus raphanistrum subsp. landra
FD970756       <-- GGGCTCGTTTGCTGGATCTTCCAATATATCACCCTCGTGACTAAGGTGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD558180       <-- GGGCTCGTTAGCTGGATCTTCCAATATATCACCCTCGTGACTAAGGTGCC  Raphanus raphanistrum subsp. landra
EX888845       <-- GGGCTCGTTAGCTGGATCTTCCAATATATCACCCTCGTGACTAAGGTGCC  Raphanus sativus var. oleiformis
EY909014       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756617       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541652       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908135       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX760390       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903890       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX775679       --> ..................................................  Raphanus raphanistrum subsp. landra
FY435994       --> GGGCTCGTTAGCTGGATCTTCCAATATATCACCCTCATGACTAAGGTGCC  Raphanus sativus cv GSK3-1
EV541284       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541457       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537883       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537124       --> GGGCTCGTTTGCTGGATCTTCCAATATATCACCCTCGCGACTAAG-TGCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD554129       --> ..................................................  Raphanus raphanistrum subsp. landra
EY904607       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               901    -    951
UN23273        --> AGAGGTTCCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- AGAGGTTCCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
EV568462       <-- AGAGGTTCCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
FD970756       <-- AGAGGTTCCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
FD558180       <-- AGAGGTTCCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
EX888845       <-- AGAGGTTCCTATATCGGCTGTAAATAGATTTCTTTGTCACGGGGACAGGA
EY909014       <-- ..................................................
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> AGAGGTTCCTATCTCGGCTGTAAATGGATTTCTTTGTCAC..........
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> AGAGGT-CCTATCTCGGCTGTAAATAGATTTCTTTGTCACGGGGAC....
FD554129       --> ..................................................
EY904607       --> ..................................................

               951    -   1001
UN23273        --> ACGTTGTGCTTCTTCGCATACTCGATAGCGTCTTCTCTGCCTTGGATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ACGTTGTGCTTCTTGGCATACTCGATAGCGTCTTCTCTGCCTTGGATCTC
EV568462       <-- ACGTTGTGCTTCTTCGCATACTCGATAGCGTCTTCTCTGCCTTGGATCTC
FD970756       <-- ACGTTGTGCTTCTTGGCATACTCGATAGCGTCTTC--TGCCTTGGATCTC
FD558180       <-- ACGTTGTGCTTCTTCGCATACTCGATAGCGTCTTCTCTGCCTTGGATCTC
EX888845       <-- ACGTTGTGCTTCTTCGCATACTCGATAGCGTCTTCTCTGCCTTGGATCTC
EY909014       <-- ......................................tctgctGATCTC
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1001   -   1051
UN23273        --> CCATTCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- CCATCCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
EV568462       <-- CCATTCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
FD970756       <-- CCATTCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
FD558180       <-- CCATTCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
EX888845       <-- CCATTCTCTCCATGGTGCCACGACTTTAAGTTCAGGGTTTAACGAAAAGA
EY909014       <-- CCAT-CTCTCCATG-TGC-ACGACTT-AAGT-CAGG-TTTA-CGAAA-GA
EX756617       <-- ..................................................
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1051   -   1101
UN23273        --> AGGTGAGCTCAAACCGAACCTGGTCATTTCCTTTACCAGTACACCCATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- AGGTGAGCTCAAACCGAACCTGGTCATTTCCTTTACCAGTACACCCATGA
EV568462       <-- AGGTGAGCTCAAACCGAACCTGGTCATTTCCTTTA...............
FD970756       <-- AGGTGAGCTCAAACCGAACCTc............................
FD558180       <-- AGGTGAGCTCAAACCGAACCTGGTCATTTCCTTTACCAGTACACCCATGA
EX888845       <-- AGGTGAGCTCAAACCGAACCTGGTCATTTCCTTTACCAGTACACCCATGA
EY909014       <-- AG-TGAGCTCAA-CCGAACCTGGTCATT-CCTTTACCAGTACACCCATGA
EX756617       <-- ...................................CCAGTACACCCATGA
FD541652       <-- ..................................................
EY908135       <-- ..................................................
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1101   -   1151
UN23273        --> GCAACAGCATCAGCTCCAACCTCAGCAGCTACATCTACCATGGC-TTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- GCAACAGCATCAGCTCCc................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- GCAc..............................................
EX888845       <-- GCAACAGCATCAGCTCCAACCTCAGCAGCTACATCTACCATGGCCTTAGC
EY909014       <-- GCAACAGCATCAGCTCCA-CCTCAGCAGCTACATCTACCATGGC-TTAGC
EX756617       <-- GCAACAGCATCAGCTCCAAC-TCAGCAGCTACATCTACCATGGC-TTAGC
FD541652       <-- ...............................................AGC
EY908135       <-- ................................................GC
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1151   -   1201
UN23273        --> AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
EY909014       <-- AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
EX756617       <-- AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
FD541652       <-- AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
EY908135       <-- AATGACAGGTCGAGCCATGGAGGTACCAAGCAAGTATTTTCGTTCGTAGA
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1201   -   1251
UN23273        --> TGGCACCAGCTCTGAGACAAGGGAATATGTAATCTTTAACAAACTCCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- TGGCACCAGCTCTGAGACAAGGGAATATGTAATCTTTAACAAACTCCTCG
EY909014       <-- TGGCACCAGCTCTGAGACAAGG-AATATGTAATCTTTAACAAACTCCTCG
EX756617       <-- TGGCACCAGCTCTGAGACAAGAGAATATGTAATCTTTAACAAACTCCCCG
FD541652       <-- TGGCACCAGCTCTGAGACAAGGGAATATGTAATCTTTAACAAACTCCTCG
EY908135       <-- TGGCACCAGCTCTGAGACAAGAGAATATGTAATCTTTAACAAACTCCTCG
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1251   -   1301
UN23273        --> GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
EY909014       <-- GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
EX756617       <-- GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
FD541652       <-- GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
EY908135       <-- GTGAGATCCTTAACAACCAACTGAGAAGCACCACTAGCCTTAGCCTTTTG
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1301   -   1351
UN23273        --> TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCAGCGGTGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCc..........
EY909014       <-- TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCAGCGGTGAAAC
EX756617       <-- TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCAGCGGTGAAAC
FD541652       <-- TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCAGCGGTGAAAC
EY908135       <-- TTCCAAACCATCCAACTCTTTTATTCCCTGACCAACATCAGCGGTGAAAC
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1351   -   1401
UN23273        --> ATACAACTTCACAGCCATAGTTTTCCTTAAGCCATGGCACGATGACAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- ATACAACTTCACAGCCATAGTCTTCCTTAAGCCATGGCACGATGACAGAG
EX756617       <-- ATACAACTTCACAGCCATAGTTTTCCTTAAGCCATGGCACGATGACAGAG
FD541652       <-- ATACAACTTCACAGCCATAGTTTTCCTTAAGCCATGGCACGATGACAGAG
EY908135       <-- ATACAACTTCACAGCCATAGTTTTCCTTAAGCCATGGCACGATGACAGAG
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1401   -   1451
UN23273        --> GTGTCTAAGCCTCCACTGTAAGCTAGAACGACTTTCTTCAGTTTGCCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- GTGTCTAAGCCTCCACTGTAAGCTAGAACGACTTTCTTCAGTTTGCCACG
EX756617       <-- GTGTCTAAGCCTCCACTGTAAGCTAGAACGACTTTCTTCAGTTTGCCACG
FD541652       <-- GTGTCTAAGCCTCCACTGTAAGCTAGAACGACTTTCTTCAGTTTGCCACG
EY908135       <-- GTGTCTAAGCCTCCACTGTAAGCTAGAACGACTTTCTTCAGTTTGCCACG
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1451   -   1501
UN23273        --> AAGCCCTGCTTCGGCACCCTTTGAATCAGCAGCCAGGACAGTCTGTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- AAGCCCTGCTTCGGCACCCTTTGAATCAGCAGCCAGGACAGTCTGTCCAT
EX756617       <-- AAGCCCTGCTTCGGCACCCTTTGAATCAGCAGCCAGGACAGTCTGTCCAT
FD541652       <-- AAGCCCTGCTTCGGCACCCTTTGAATCA---GCCAGGACAGTCTGTCCAT
EY908135       <-- AAGCCCTGCTTCGGCACCCTTTGAATCAGCAGCCAGGACAGTCTGTCCAT
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1501   -   1551
UN23273        --> CACCACCAGACATAACAGCTCGAATAGCTTGATTCTTGCAGACCCGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- CACCACCAGACATAACAGCTCGAATAGCTTGATTCTTGCAGACCCGGGTT
EX756617       <-- CACCACCAGACATAACAGCTCGAATAGCTTGATTCTTGCAGACCCGGGTT
FD541652       <-- CACCACCAGACATAACAGCTCGAATAGCTTGATTCTTGCAGACCCGGGTT
EY908135       <-- CACCACCAGACATAACAGCTCGAATAGCTTGATTCTTGCAGACCCGGGTT
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1551   -   1601
UN23273        --> GCGGGAACATGACTAGTAGCAATAGCATTGCCAACAAGCTGGCTTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- GCGGGAACATGACTAGTAGCAATAGCATTGCCAACAAGCTGGCTTCGTCT
EX756617       <-- GCGGGAACATGACTAGTAGCAATAGCATTGCCAACAAGCTGGCTTCGTCT
FD541652       <-- GCGGGAACATGACTAGTAGCAATAGCATTGCCAACAAGCTGGCTTCGTCT
EY908135       <-- GCGGGAACATGACTAGTAGCAATAGCATTGCCAACAAGCTGGCTTCGTCT
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1601   -   1651
UN23273        --> CACAGACAACTCTTGAAAGGAGGAGGAAGTGGTTCTTGGACAAGCTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- CGCAGACAACTCTTGAAAGGAGGAGGAAGTGGTTCTTGGACAAGCTACAT
EX756617       <-- CACAGACAACTCTTGAAAGGAGGAGGAAGTGGTTCTTGGACAAGCTACAT
FD541652       <-- CACAGACAACTCTTGAAAGGAGGAGGAAGTGGTTCTTGGACAAGCTACAT
EY908135       <-- CACAGACAACTCTTGAAAGGAGGAGGAAGTGGTTCTTGGACAAGCTACAT
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1651   -   1701
UN23273        --> TCTGACATCTTAAGCTAGCATTGGGTGAGCTGCGAAGCGCGAGAGCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- TCTGACATCTTAAGCTAGCATTGGGTGAGCCGCGAAGCGCGAGAGCAGAT
EX756617       <-- TCTGACATCTTAAGCTAGCATTGGGTGAGCTGCGAAGCGCGAGAGCAGAT
FD541652       <-- TCTGACATCTTAAGCTAGCATTGGGTGAGCTGCGAAGCGCGAGAGCAGAT
EY908135       <-- TCTGACATCTTAAGCTAGCATTGGGTGAGCTGCGAAGCGCGAGAGCAGAT
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1701   -   1751
UN23273        --> GACGAGGCAGAAGGAAACGAAGTCGCCGAGATTTCAGCCATGTAAGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ..................................................
EV568462       <-- ..................................................
FD970756       <-- ..................................................
FD558180       <-- ..................................................
EX888845       <-- ..................................................
EY909014       <-- GACGAGGCAGAAGGAAACGAAGTCGCCGAGATTTCAGCCATGTAAGAAGA
EX756617       <-- GACGAGGCAGAAGGAAACGAAGTCGCCGAGATTTCAGCCATGTAAGAAGA
FD541652       <-- GACGAGGCAGAAGGAAACGAAGTCGCCGAGATTTCAGCCATGTAAGAAGA
EY908135       <-- GACGAGGCAGAAGGAAACGAAGTCGCCGAGATTTCAGCCATGTAAGAAGA
FD977183       --> ..................................................
EX760390       --> ..................................................
EY903890       --> ..................................................
EX775679       --> ..................................................
FY435994       --> ..................................................
EV541284       --> ..................................................
EV541457       --> ..................................................
FD537883       --> ..................................................
FD537124       --> ..................................................
FD554129       --> ..................................................
EY904607       --> ..................................................

               1751   -   1801
UN23273        --> TTGTTTCTGGGTTTCTTTGCTTACTGTCTGCGTCGTGTTCGACAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD540674       <-- ................................................
EV568462       <-- ................................................
FD970756       <-- ................................................
FD558180       <-- ................................................
EX888845       <-- ................................................
EY909014       <-- TTGTTTCTGGGTTTCTTTGCTTACTGTCTGCGTCGTGTcc........
EX756617       <-- TTGTTTCTGGGTTTCTTTGCTTACTGTCTGCGTCGTGTTCGACAATCC
FD541652       <-- TTGTTTCTGGGTTTCTTTGCTTACTGTCTcc.................
EY908135       <-- TTGTTTCTGGGTTTCTTTGCTTACTGTCTGCGTCGTGTTC........
FD977183       --> ................................................
EX760390       --> ................................................
EY903890       --> ................................................
EX775679       --> ................................................
FY435994       --> ................................................
EV541284       --> ................................................
EV541457       --> ................................................
FD537883       --> ................................................
FD537124       --> ................................................
FD554129       --> ................................................
EY904607       --> ................................................