1      -     51
UN23286        --> GGCCACAGAAACCGCAAGAGAAAAAAACTTTAAAGAGAAGAGGAAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................
FD554163       <-- ..................................................
EV531676       <-- ..................................................
FD567316       <-- ..................................................
FD534858       --> GGCCACAGAAACCGCAAGAGAAAAAAACTTTAAAGAGAAGAGG--GAAGC
FD558222       --> ..gCACAGAAACCGCAAGAGAAAAAAACTTTAAAGAGAAGAGGAAGAAGC
EV570285       --> ..ggACAGAAACCGCAAGAGAAAAAAACTTTAAAGAGAAGAGGAAGAAGC
FD564802       --> ...................GAAAAAAACTTTAAAGAGAAGAGGAAGAAGC
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> ..................................................

               51     -    101
UN23286        --> AAAGGGAGGAGGTAGCCGAAGAAGAATATCAAAATACACTCGAATGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................
FD554163       <-- ..................................................
EV531676       <-- ..................................................
FD567316       <-- ..................................................
FD534858       --> AAAGGGAGGAGGTAGCCGAAGAAGAATATCAAAATACACTCAAATGCTTT
FD558222       --> AAAGGGAGGAGGTAGCCGAAGAAGAATATCAAAATACACTCGAATGCTTT
EV570285       --> AAAGGGAGGAGGTAGCCGAAGAAGAATATCAAAATACACTCGAATGCTTT
FD564802       --> AAAGGGAGGAGGTAGCCGAAGAAGAATATCAAAATACACTCAAATGCTTT
FD563656       --> ..............................................CTTT
EY938680       --> ..................................................
EV526375       --> ..................................................

               101    -    151
UN23286        --> CATTTGTTATTTTATTTTGAGAAAACATATAATTCTCCAACCTTTCGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................
FD554163       <-- ..................................................
EV531676       <-- ..................................................
FD567316       <-- ..................................................
FD534858       --> CATTTGTTATTTTATTTTGAGAAAACATATAATTCTCCAACCTTTCGAAC
FD558222       --> CATTTGTTATCTTATTT-GAGAAAACATATAATTCTCCAACCTTTCGAAC
EV570285       --> CATTTGTTATCTTATTTTGAGAAAACATATAATTCTCCAACCTTTCGAAC
FD564802       --> CATTTGTTATTTTATTTTGAGAAAACATATAATTCTCCAACCTTTCGAAC
FD563656       --> CATTTGTTATTTTATTTTGAGAAAACATATAATTCTCCAACCTTTCGAAC
EY938680       --> ..................................................
EV526375       --> ..................................................

               151    -    201
UN23286        --> CACTACTACGTTTGGTTCACGTCGCTTGGTCCAGAGAATGAATCCGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................  Raphanus sativus var. oleiformis
FD554163       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV531676       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567316       <-- ..................................................  Raphanus sativus var. oleiformis
FD534858       --> CACTACTACGTTTGGTTCACGTCGCTTGGTCCAGAGAATGAATCCGTTTA  Raphanus raphanistrum subsp. maritimus
FD558222       --> CACTACTACGTTTGGTTCACGTCGCTTGGTCCAGAGAATGAATCCGTTCA  Raphanus raphanistrum subsp. landra
EV570285       --> CACTACTACGTTTGGTTCACGTCGCTTGGTCCAGAGAATGAATCCGTTCA  Raphanus raphanistrum subsp. landra
FD564802       --> CACTACTACGTTTGGCTCACGTCGCTTGGTCCAGAGAATGAATCCGTTTA  Raphanus sativus var. oleiformis
FD563656       --> CACTACTACGTTTGGTTCACGTCGCTTGGTCCAGAGAATGAATCCGTTTA  Raphanus sativus var. oleiformis
EY938680       --> ...................................GAATGAATCCGTTTA  Raphanus sativus cv Early Scarlet Globe
EV526375       --> ...........................................CCGTTCA  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN23286        --> ACGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTAATCAACTCGCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................  Raphanus sativus var. oleiformis
FD554163       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV531676       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567316       <-- ..................................................  Raphanus sativus var. oleiformis
FD534858       --> ACGTATCCTCAACAAGCTCACCTCCTCCTGTTGCTAATCAACTCGCGGCG  Raphanus raphanistrum subsp. maritimus
FD558222       --> TCGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTAATCATCTCGCGGCG  Raphanus raphanistrum subsp. landra
EV570285       --> TCGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTAATCATCTCGCGGCG  Raphanus raphanistrum subsp. landra
FD564802       --> ACGTATCCTCCACAAGCTCACCTCCTCTTGTTGCTAATCAACTCGCGGCG  Raphanus sativus var. oleiformis
FD563656       --> ACGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTAATCAACTCGCGGCG  Raphanus sativus var. oleiformis
EY938680       --> ACGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTAATCAACTCGCGGCG  Raphanus sativus cv Early Scarlet Globe
EV526375       --> TCGTATCCTCCACAAGCTCACCTCCTCCTGTTGCTGATCATCTCGCGGCG  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN23286        --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................
FD554163       <-- ..................................................
EV531676       <-- ..................................................
FD567316       <-- ..................................................
FD534858       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
FD558222       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
EV570285       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
FD564802       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
FD563656       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
EY938680       --> AAGCGAAAGAGAGGCCGTCCACGTAAGGATGCATCCATGACTCAGCCAGA
EV526375       --> AAGCGAAAGAGAGGCCGTC-ACGTAAGGATGCATCCATGACTCAGCCAGA

               301    -    351
UN23286        --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- ..................................................
FD554163       <-- ..................................................
EV531676       <-- ..................................................
FD567316       <-- ..................................................
FD534858       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
FD558222       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
EV570285       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGCTGGTAAGA
FD564802       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
FD563656       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
EY938680       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA
EV526375       --> AAGTTCTCGAGGGACGACTCCAAAGGAGGACGTTAATCTGGTTGGTAAGA

               351    -    401
UN23286        --> CCATTTCTGGTGTGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- .....................GATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus sativus var. oleiformis
FD554163       <-- .........................................ATCATCAAT  Raphanus raphanistrum subsp. landra
EV531676       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567316       <-- ..................................................  Raphanus sativus var. oleiformis
FD534858       --> CCATTTCTGGTGTGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus raphanistrum subsp. maritimus
FD558222       --> CCATTTCTGGTGAGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus raphanistrum subsp. landra
EV570285       --> CCATTTCTGGTGAGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus raphanistrum subsp. landra
FD564802       --> CCATTTCTGGTGTGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus sativus var. oleiformis
FD563656       --> CCATTTCTGGTGTGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus sativus var. oleiformis
EY938680       --> CCATTTCTGGTGTGGTCGAAGGATCTTTCGAAGCGGGGTTCATCATCAAT  Raphanus sativus cv Early Scarlet Globe
EV526375       --> CCATTTCTGGTGAGGTCGAAGGATCTTTCGAAGCGGGGTTCACCATCAAT  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN23286        --> GTGAAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- GTGAAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus sativus var. oleiformis
FD554163       <-- GTGAAGGTGAAAGAAAGTGACATGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus raphanistrum subsp. landra
EV531676       <-- .....................................TTGTGTTCGCACG  Raphanus raphanistrum subsp. maritimus
FD567316       <-- ..................................................  Raphanus sativus var. oleiformis
FD534858       --> GTGAAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus raphanistrum subsp. maritimus
FD558222       --> GTGAAGGTGAAAGAAAGTGACATGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus raphanistrum subsp. landra
EV570285       --> GTGAAGGTGAAAGAAAGTGACATGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus raphanistrum subsp. landra
FD564802       --> GTGAAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus sativus var. oleiformis
FD563656       --> GTGAAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus sativus var. oleiformis
EY938680       --> GTGGAGGTGAAAGAAAGTGACACGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus sativus cv Early Scarlet Globe
EV526375       --> GTGAAGGTGAAAGAAAGTGACATGAGACTGAGAGGTCTTGTGTTCGCACG  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN23286        --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
FD554163       <-- GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
EV531676       <-- GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGCGGCTCCTCATGTCA
FD567316       <-- ..................................................
FD534858       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
FD558222       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
EV570285       --> GGGGAAAGTCGTTCCCGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
FD564802       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
FD563656       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
EY938680       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA
EV526375       --> GGGGAAAGTCGTTCCTGTGACTCCAGAAAACGACGTGGCTCCTCATGTCA

               501    -    551
UN23286        --> AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus sativus var. oleiformis
FD554163       <-- AAATGATCGTAAGAGAAGAGATTAAGAAACACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. landra
EV531676       <-- AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. maritimus
FD567316       <-- .........TAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus sativus var. oleiformis
FD534858       --> AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. maritimus
FD558222       --> AAATGATCGTAAGAGAAGAGATTAAGAAACACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. landra
EV570285       --> AAATGATCGTAAGAGAAGAGATTAAGAAACACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. landra
FD564802       --> AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus sativus var. oleiformis
FD563656       --> AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus sativus var. oleiformis
EY938680       --> AAATGATCGTAAGAGAAGAGATTAAGAATCACACTGATGATCGTGATCAA  Raphanus sativus cv Early Scarlet Globe
EV526375       --> AAATGATCGTAAGAGAAGAGATTAAGAAACACACTGATGATCGTGATCAA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN23286        --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
FD554163       <-- TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
EV531676       <-- TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
FD567316       <-- TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
FD534858       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
FD558222       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
EV570285       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCACTGACTCGGAGATGTC
FD564802       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
FD563656       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
EY938680       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC
EV526375       --> TCTCCTAATGATCAGACAGTGAAAGATGCTGTCGCTGACTCGGAGATGTC

               601    -    651
UN23286        --> TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus sativus var. oleiformis
FD554163       <-- TGAATGTGCTCGAGCATTGTTTTTACTACCACATGGGATAAATGGAGAAG  Raphanus raphanistrum subsp. landra
EV531676       <-- TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus raphanistrum subsp. maritimus
FD567316       <-- TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus sativus var. oleiformis
FD534858       --> TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus raphanistrum subsp. maritimus
FD558222       --> TGAATGTGCTCGAGCATTGTTTTTACTACCACATGGGATAAATGGAGAAG  Raphanus raphanistrum subsp. landra
EV570285       --> TGAATGTGCTCGAGCATTGTTTTTACTACCACATGGGATAAATGGAGAAG  Raphanus raphanistrum subsp. landra
FD564802       --> TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus sativus var. oleiformis
FD563656       --> TGAATGTGCTCGAGCATTGTTTTTACTGCCACATGGAATAAATGGAGAAG  Raphanus sativus var. oleiformis
EY938680       --> TGAATGTGCTCGAGCATTGTTTTTACTGCCACATG...............  Raphanus sativus cv Early Scarlet Globe
EV526375       --> TGAATGTGCTCGAGCATTGTTTTTACTACCACATGGGATAAATGGAGAAG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN23286        --> CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus sativus var. oleiformis
FD554163       <-- ACCCCAGGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus raphanistrum subsp. landra
EV531676       <-- CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus raphanistrum subsp. maritimus
FD567316       <-- CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus sativus var. oleiformis
FD534858       --> CCCCCAAGGAAGT.....................................  Raphanus raphanistrum subsp. maritimus
FD558222       --> ACCCCAGGGAAGTTACG-AAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus raphanistrum subsp. landra
EV570285       --> ACCCCAGGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus raphanistrum subsp. landra
FD564802       --> CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus sativus var. oleiformis
FD563656       --> CCCCCAAGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGTGGAG  Raphanus sativus var. oleiformis
EY938680       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV526375       --> ACCCCAGGGAAGTTACGGAAGAAAGAGAAGCTGCTACTTGTTTGGCGGAG  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN23286        --> TTTTTTAAAACTCCAGAGACG----ACCATAGGGACTGCTCAACATAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TTTTTTAAAACTCCAGAGACG----ACCATAGGGACTGCTCAACGTAGTC  Raphanus sativus var. oleiformis
FD554163       <-- TTTTTTAAAACTCCAGAGACG----ACCACAGTGACTCCTCAACATAGTC  Raphanus raphanistrum subsp. landra
EV531676       <-- TTTTTTAAAACTCCAGAGACGCGCGACCATAGGGACTGCTCAACATAGTC  Raphanus raphanistrum subsp. maritimus
FD567316       <-- TTTTTTAAAACTCCAGAGACG----ACCATAGGGACTGCTCAACATAGTC  Raphanus sativus var. oleiformis
FD534858       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD558222       --> TTTTT--AAACTCCAGAGACG----AC-ACAGTGACTCCTCA-CATAGTC  Raphanus raphanistrum subsp. landra
EV570285       --> TTTTTTAAAACTCCAGAGACG----ACCACAGTGACTCCTCAACATAGTC  Raphanus raphanistrum subsp. landra
FD564802       --> TTTTTTAAA-CTCCAGAGACG----ACCATAGGGACTGCTCAACGTAGTC  Raphanus sativus var. oleiformis
FD563656       --> TTTTTTAAA-CTCCAGAGACG----ACCATAGGGACTGCTCAACATAGTC  Raphanus sativus var. oleiformis
EY938680       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV526375       --> TTTTTTAAAACTCCAGAGACG----ACCACAGTGACTCCTCAACATAGTC  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN23286        --> TTGTCATGGCACGGAAAGAGACCAACGAGCAACATAAATCTCCTGGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TTGTCATGGCACGGAAAGAGACCAACGAGCAACATAAATCTCCTGGTGAG  Raphanus sativus var. oleiformis
FD554163       <-- TTGTCATGGCACGGGAAGAGACCAACGCGCAACATAAATCTCCTGGTGAG  Raphanus raphanistrum subsp. landra
EV531676       <-- TTGTCATGGCACGGAAAGAGACCAACGAGCAACATAAATCTCCTGGTGAG  Raphanus raphanistrum subsp. maritimus
FD567316       <-- TTGTCATGGCACGGAAAGAGACCAACGAGCAACATAAATCTCCTGGTGAG  Raphanus sativus var. oleiformis
FD534858       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD558222       --> TTGTCATGGCA.......................................  Raphanus raphanistrum subsp. landra
EV570285       --> TTGTCATGGCACGGAAAGAGACCAACGCGCAACATAA-TCTCCTGGTGAG  Raphanus raphanistrum subsp. landra
FD564802       --> TTGTCATGGCACGGAAAGAGAC-AACGAGCA-CATAA-TCTCCTGGTGAG  Raphanus sativus var. oleiformis
FD563656       --> TTGTCATGGCACGGAA-GAGAC-AACGAGCAc..................  Raphanus sativus var. oleiformis
EY938680       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV526375       --> TTGTCATGGCACGGAAAGAGACCAACGCGCAACATAAATCTCCTGGTGAG  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN23286        --> GCTCGTGGGTTTGATCTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- GCTCGTGGGTTTGATCTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA
FD554163       <-- GCTCGTGGGTTTGATCTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA
EV531676       <-- GCTCGTGGGTTTGATCTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA
FD567316       <-- GCTCGTGGGTTTGATTTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> GCTCGTGGGTTTGATCTTATGG............................
FD564802       --> GCTCGTGG-TTTGATCTTAT..............................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> GCTCGTGGGTTTGATCTTATGGCGGAGGAACCGGTTCATCCGGTAGAGGA

               851    -    901
UN23286        --> AGTACCGCCAGAGCTTCAGCTAGGACTTGGGAACAAGACAATATTGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- AGTACCGCCAGAGCTTCAGCTAGGACTTGGGAACAAGACAATATTGAGGG
FD554163       <-- AGTACCGCCAGAGCTTCAACTAGGACTTGGGAACAAGACAATATTGAGGG
EV531676       <-- AGTACCGCCAGAGCTTCAGCTAGGACTTGGGAACAAGACAATATTGAGGG
FD567316       <-- AGTACCGCCAGAGCTTCAGCTAGGACTTGGGAACAAGACAATATTGAGGG
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> ..................................................
FD564802       --> ..................................................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> AGTACCGCCAGAGCTTCAACTAGGACTTGG....................

               901    -    951
UN23286        --> GAGACGACAACAAAAACGGCACCGCAATGGAGATAGATCCTAAAAGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- GAGACGACAACAAAAACGGCACCGCAATGGAGATAGATCCTAAAAGTTCT
FD554163       <-- GAGACGACAACAAAAACAGCACCGCAATGGAGATAGATCCTAAAAGCTCT
EV531676       <-- GAGACGACAACAAAAACAGCACCGCAATGGAGATAGATCCTAAAAGCTCT
FD567316       <-- GAGACGACAACAAAAACGGCACCGCAATGGAGATAGATCCTAAAAGTTCT
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> ..................................................
FD564802       --> ..................................................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> ..................................................

               951    -   1001
UN23286        --> GTGTCTAGGAGTGGCTTCATAGCGAACTTGTTTAAAGGAAAAGAAAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- GTGTCTAGGAGTGGCTTCATAGCGAACTTGTTTAAAGGAAAAGAAAAGGT
FD554163       <-- GTGTCTAGGAATGGCatagcg.............................
EV531676       <-- GTGTCTAGGAGTGGCTTCATAGCGAACTTGTTTAAAGGAAAAGAAAAGGT
FD567316       <-- GTGTTTAGGAGTGGCTTCATAGCGAACTTGTTTAAAGGAAAAGAAAAGGT
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> ..................................................
FD564802       --> ..................................................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> ..................................................

               1001   -   1051
UN23286        --> CGACTATTAGTTTAAAACTCTCTTTTATATTTCAGACTCTCCAATACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- CGACTATTAGTTTAAAACTCTCTTTTATATTTCAGACTCTCCAATACATT
FD554163       <-- ..................................................
EV531676       <-- CGACTATTAGTTTAAAACTCTCTTTTATATTTCAGACTCTCCAATACATT
FD567316       <-- CGACTATTAGTTTAAAACTCTCTTTTATATTTCAGACTCTCCAATACATT
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> ..................................................
FD564802       --> ..................................................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> ..................................................

               1051   -   1101
UN23286        --> TCTTCTCTCTTTTGTTTCAGTACTTTGTATTATCATGCTTCAGTGTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TCTTCTCTCTTTTGTTTCAGTACTTTGTATTATCATGCTTCAGTGTTTGT
FD554163       <-- ..................................................
EV531676       <-- TCTTCTCTCTTTTGTTTCAGTACTTTGTATTATCATGCTTCAGTGTTTGT
FD567316       <-- TTTTCTCTCTTTTGTTTCAGTACTTTGTATTATCATGCTTCAGTGTTTGT
FD534858       --> ..................................................
FD558222       --> ..................................................
EV570285       --> ..................................................
FD564802       --> ..................................................
FD563656       --> ..................................................
EY938680       --> ..................................................
EV526375       --> ..................................................

               1101   -   1151
UN23286        --> TGTAAAACCTTTTTTTTCTTGTTATAAAAACACCTGTTTCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD568196       <-- TGTAAAACCTTTTTctc...........................
FD554163       <-- ............................................
EV531676       <-- TGTAAAACCTTTTTTTTCTTGTTATAAAAACACCTGTTTCTGTT
FD567316       <-- TGTAAAACCTTTTTTTTCTTGTTAT...................
FD534858       --> ............................................
FD558222       --> ............................................
EV570285       --> ............................................
FD564802       --> ............................................
FD563656       --> ............................................
EY938680       --> ............................................
EV526375       --> ............................................