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Alignment for radish unigene UN23413

               -1     -     49
UN23413        --> ..TGTTCAAATAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- gcTGTTCAAATAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus var. oleiformis
EY933611       <-- ..................................................  Raphanus sativus var. oleiformis
EV524958       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922138       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> gcTGTTCAAATAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus var. oleiformis
FY430096       --> gtTGTTCAA-TAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus cv GSK3-1
FY447432       --> gtTGTTCAA-TAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus cv GSK3-1
FY447700       --> ...GTTCAA-TAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus cv GSK3-1
FY444759       --> gggggTCAAATAGCTATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus cv GSK3-1
EX759024       --> ......CAAATAG-TATTTATGATGATCAGTAATGTACATGTAGTTGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> ......CAAATAG-TATTTATGATGATCAGTAATGTACATTTAGTTGACC  Raphanus sativus var. oleiformis
EY917639       --> ..........caaaTATTTATGATGATCAGTAATGTACATGTAGTTGACC  Raphanus raphanistrum subsp. landra
EY918158       --> ..........caaaTATTTATGATGATCAGTAATGTACATGTAGTTGACC  Raphanus raphanistrum subsp. landra
FD546483       --> ..........caaaTATTTATGATGATCAGTAATGTACATGTAGTTGACC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> ........................................TTAGTTGACC  Raphanus sativus cv GSK3-1

               49     -     99
UN23413        --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
EY933611       <-- ........................ATGTACATGTTGT---ATAATATGCT
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
FY430096       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
FY447432       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
FY447700       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
FY444759       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
EX759024       --> AAAAAAGAAA-----AA--CAGTAATGTACATGTTGT---ATAATATGCT
EY929038       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
EY917639       --> AAAAAGGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
EY918158       --> AAAAAGGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT
FD546483       --> AAAAAAGAAAGAAAAAAAACAGTAATGTACATGTTGTTGTATAATATGCT
FY445317       --> AAAAAAGAAA-----AAAACAGTAATGTACATGTTGT---ATAATATGCT

               99     -    149
UN23413        --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus sativus var. oleiformis
EY933611       <-- GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus sativus var. oleiformis
EV524958       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922138       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus sativus var. oleiformis
FY430096       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCCCTATC  Raphanus sativus cv GSK3-1
FY447432       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCCCTATC  Raphanus sativus cv GSK3-1
FY447700       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCCCTATC  Raphanus sativus cv GSK3-1
FY444759       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCCCTATC  Raphanus sativus cv GSK3-1
EX759024       --> GTAGAAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus sativus var. oleiformis
EY917639       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus raphanistrum subsp. landra
EY918158       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus raphanistrum subsp. landra
FD546483       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCTCTATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> GTAGTAACTGCACAATTCAATTATTGTAGTTGTCCAGCTCTGTCCCTATC  Raphanus sativus cv GSK3-1

               149    -    199
UN23413        --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus var. oleiformis
EY933611       <-- TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus var. oleiformis
EV524958       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922138       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus var. oleiformis
FY430096       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus cv GSK3-1
FY447432       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus cv GSK3-1
FY447700       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus cv GSK3-1
FY444759       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus cv GSK3-1
EX759024       --> TTCAAAGCAGAGCCAAGAGAGACAAACAATCTTACTTGTCTTGAAAACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus var. oleiformis
EY917639       --> TTCAAAGCAGAGCCAAGAGAGACAAACAATCTTACTTGTCTTGAAAACTC  Raphanus raphanistrum subsp. landra
EY918158       --> TTCAAAGCAGAGCCAAGAGAGACAAACAATCTTACTTGTCTTGAAAACTC  Raphanus raphanistrum subsp. landra
FD546483       --> TTCAAAGCAGAGCCAAGAGAGACAAACAATCCTACTTGTCTTGAAAACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> TTCAAAGCAGAGCCAAGAGAGACGAACAATCTTACTTGTCTTGAAAACTC  Raphanus sativus cv GSK3-1

               199    -    249
UN23413        --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EY933611       <-- AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> AGGATAAAA-TCAAGAAAAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FY430096       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FY447432       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FY447700       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FY444759       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EX759024       --> AGGATAAAAATCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EY929038       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EY917639       --> AGGATAAAAATCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
EY918158       --> AGGATAAAAATCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FD546483       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC
FY445317       --> AGGATAAAA-TCAAGAAGAAGCTTTCAGGTTCTTTTCACCAGTGAGATTC

               249    -    299
UN23413        --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus var. oleiformis
EY933611       <-- CATAAGGATCACCACCCCATTCTTCAAACACAAATATAGCGTTCTGAGAC  Raphanus sativus var. oleiformis
EV524958       <-- ....................................atagtgTCTGAGAC  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY922138       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus var. oleiformis
FY430096       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus cv GSK3-1
FY447432       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus cv GSK3-1
FY447700       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus cv GSK3-1
FY444759       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus cv GSK3-1
EX759024       --> CATAAGGATCACCACCCCACTCTTCAAACACAACTATAATGTTCTGAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> CATAAGGATCACCACCCCATTCTTCAAACACAAATATAGCGTTCTGAGAC  Raphanus sativus var. oleiformis
EY917639       --> CATAAGGATCACCACCCCACTCTTCAAACACAACTATAATGTTCTGAGAC  Raphanus raphanistrum subsp. landra
EY918158       --> CATAAGGATCACCACCCCACTCTTCAAACACAACTATAATGTTCTGAGAC  Raphanus raphanistrum subsp. landra
FD546483       --> CATAAGGATCACCACCCCACTCTTCAAACACGACTATAATGTTCTGAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> CATAAGGATCACCACCCCATTCTTCAAACACAACTATAACGTTCTGAGAC  Raphanus sativus cv GSK3-1

               299    -    349
UN23413        --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
EY933611       <-- TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
EV524958       <-- T-GAGCCATGA-CGAGGTACATGGTACCATCTT-GAGAAGCTTCACCACA
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
FY430096       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
FY447432       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
FY447700       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
FY444759       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
EX759024       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
EY929038       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAAAAGCTTCACCACA
EY917639       --> TTGAGCCATGAACGAGGTATATGGTACCATCTTTGAGAAGCTTCACCACA
EY918158       --> TTGAGCCATGAACGAGGTATATGGTACCATCTTTGAGAAGCTTCACCACA
FD546483       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA
FY445317       --> TTGAGCCATGAACGTGGTACATGGTACCATCTTTGAGAAGCTTCACCACA

               349    -    399
UN23413        --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EY933611       <-- ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EV524958       <-- ATTACTCAAGCATTTCTT-GCGTCGAATGTTCCAGCGTAGTTGCAACGTT
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FY430096       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FY447432       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FY447700       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FY444759       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EX759024       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EY929038       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EY917639       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
EY918158       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FD546483       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC
FY445317       --> ATTACTCAAGCATTTCTTTGCGTCGAATGTTCCAGCGTAGTTGCAACGTC

               399    -    449
UN23413        --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus var. oleiformis
EY933611       <-- CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus var. oleiformis
EV524958       <-- CACAGTTTCCTTGAGCTTTGTAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus raphanistrum subsp. maritimus
EY921509       <-- .............AGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCGA  Raphanus raphanistrum subsp. landra
EY922138       <-- ..................................................  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus var. oleiformis
FY430096       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus cv GSK3-1
FY447432       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus cv GSK3-1
FY447700       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus cv GSK3-1
FY444759       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus cv GSK3-1
EX759024       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus var. oleiformis
EY917639       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCGA  Raphanus raphanistrum subsp. landra
EY918158       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCGA  Raphanus raphanistrum subsp. landra
FD546483       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> CACAGTTTCCTTGAGCTTTATAAGCAGGCCAATGACGTCCAATGTTTCTA  Raphanus sativus cv GSK3-1

               449    -    499
UN23413        --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus var. oleiformis
EY933611       <-- CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus var. oleiformis
EV524958       <-- CTGTTTATCCAAACTAGACCTTTCCCCCATAGTGTTCATGTCTATCGCTA  Raphanus raphanistrum subsp. maritimus
EY921509       <-- CCGTTTATCCAAACTAGACCTTTCCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus raphanistrum subsp. landra
EY922138       <-- .......................cCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus raphanistrum subsp. landra
FY449729       <-- ..................................................  Raphanus sativus cv GSK3-1
FY448780       <-- ..................................................  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus var. oleiformis
FY430096       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus cv GSK3-1
FY447432       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus cv GSK3-1
FY447700       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus cv GSK3-1
FY444759       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus cv GSK3-1
EX759024       --> CCGTTTATCCAAACTTGACCTTTCCCC-ATTGTGTTCATGTCTATCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus var. oleiformis
EY917639       --> CCGTTTATCCAAACTAGACCTTTCCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus raphanistrum subsp. landra
EY918158       --> CCGTTTATCCAAACTAGACCTTTCCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus raphanistrum subsp. landra
FD546483       --> CCGTTTATCCAAACTAGACCTTTCCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> CCGTTTATCCAAACTAGACCTTTTCCC-ATAGTGTTCATGTCTATGGCCA  Raphanus sativus cv GSK3-1

               499    -    549
UN23413        --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus var. oleiformis
EY933611       <-- ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus var. oleiformis
EV524958       <-- ATGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ACGGTTCATTTCCAGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. landra
EY922138       <-- ACGGTTCATTTCCAGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. landra
FY449729       <-- ............CTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
FY448780       <-- .........................AAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus var. oleiformis
FY430096       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
FY447432       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
FY447700       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
FY444759       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1
EX759024       --> ATGGTTCATTTCCAGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus var. oleiformis
EY917639       --> ACGGTTCATTTCCAGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. landra
EY918158       --> ACGGTTCATTTCCAGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. landra
FD546483       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> ACGGTTCGTTTCCTGCTGGTGCGGCAAAAATAGACTTGTACCAGGTCAAT  Raphanus sativus cv GSK3-1

               549    -    599
UN23413        --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus var. oleiformis
EY933611       <-- GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus var. oleiformis
EV524958       <-- GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus raphanistrum subsp. maritimus
EY921509       <-- GGTTGCTTCTTGGCCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus raphanistrum subsp. landra
EY922138       <-- GGTTGCTTCTTGGCCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus raphanistrum subsp. landra
FY449729       <-- GGTTGCTTCTTGACCACGTATGATCCTGATTTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
FY448780       <-- GGTTGCTTCTTGACCACGTATGATCCTGATTTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus var. oleiformis
FY430096       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
FY447432       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
FY447700       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
FY444759       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1
EX759024       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCACACAGAGGAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus var. oleiformis
EY917639       --> GGTTGCTTCTTGGCCACGTATGATCCTTG.....................  Raphanus raphanistrum subsp. landra
EY918158       --> GGTTGCTTCTTGGCCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus raphanistrum subsp. landra
FD546483       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> GGTTGCTTCTTGACCACGTATGATCCTTGATTCCATCTCACAGAGGAACT  Raphanus sativus cv GSK3-1

               599    -    649
UN23413        --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
EY933611       <-- GTCCGTAAGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
EV524958       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
EY921509       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCATATAGGACC
EY922138       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCATATAGGACC
FY449729       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY448780       <-- GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY428722       <-- ......ATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY430096       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY447432       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY447700       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY444759       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
EX759024       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
EY929038       --> G.................................................
EY917639       --> ..................................................
EY918158       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCATATAGGACC
FD546483       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC
FY445317       --> GTCCGTATGAAGACTCATAGCTTCACCCTTCACACCAATCTTATAGGACC

               649    -    699
UN23413        --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus var. oleiformis
EY933611       <-- ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus var. oleiformis
EV524958       <-- ATTTCCATTTAGACATATCCCATGTTCCAGAGTTAACTCCCTTCAGTGTG  Raphanus raphanistrum subsp. maritimus
EY921509       <-- ATTTCCATTTCGACATATCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus raphanistrum subsp. landra
EY922138       <-- ATTTCCATTTCGACATATCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus raphanistrum subsp. landra
FY449729       <-- ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY448780       <-- ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY428722       <-- ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY449486       <-- ..................................................  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus var. oleiformis
FY430096       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY447432       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY447700       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
FY444759       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1
EX759024       --> ATTTCCATTTCGACATATCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> ..................................................  Raphanus sativus var. oleiformis
EY917639       --> ..................................................  Raphanus raphanistrum subsp. landra
EY918158       --> ATT...............................................  Raphanus raphanistrum subsp. landra
FD546483       --> ATTTCCATTTCGACATATCCCATGTTCCTGAGTTAACTCCCTTCAGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> ATTTCCATTTCGACATGTCCCATGTTCCCGAGTTAACTCCCTTCAGTGTG  Raphanus sativus cv GSK3-1

               699    -    749
UN23413        --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
EY933611       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
EV524958       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
EY921509       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
EY922138       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY449729       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY448780       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY428722       <-- ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY430096       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY447432       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACA..
FY447700       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY444759       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACAT.
EX759024       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCGACACT
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT
FY445317       --> ACCGGTCCAAGAACCCCTTTATTCCACGTCTCAAAGTGTTGACCAACATT

               749    -    799
UN23413        --> CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- CGGAAGACCAACGGCAACACTCAACAAAGCAAGCTTGTTGACACCTGCAT
EY933611       <-- CGGAAGACCAACGGCAACACTCAACAAAGCAAGCTTGTTGACACCTGCAT
EV524958       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
EY921509       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
EY922138       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY449729       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY448780       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY428722       <-- CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> CGGAAGACCAAC......................................
FY430096       --> CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY447432       --> ..................................................
FY447700       --> CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY444759       --> ..................................................
EX759024       --> CGGAAGACCAACGGCAACACTCAACAAAGCA...................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> CGGAAGACCAACTGCCACACTCAACAGAGCAAGCTTGTTGACACCTGCGT
FY445317       --> CGGAAGACCAACTGCAACACTCAACAGAGCAAGCTTGTTGACACCTGCGT

               799    -    849
UN23413        --> GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTc..................
EY933611       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTc...................
EV524958       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA
EY921509       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGCCCTCCA
EY922138       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGCCCTCCA
FY449729       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA
FY448780       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA
FY428722       <-- GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA
FY449486       <-- ..................................................
EX754771       <-- ..................................................
EW720315       --> ..................................................
FY430096       --> GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTC..
FY447432       --> ..................................................
FY447700       --> GTAGTTTGATCTTCTGGCTAA.............................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> GTAGTTTGA.........................................
FY445317       --> GTAGTTTGATCTTCTGGCTAAAGGTTAGTTTTGGGTGAGAAAGTCCTCCA

               849    -    899
UN23413        --> TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- TAAGCACTTCCTGCAAGCTGGCCATTGACAAACACATGAAGAGCATGTCC
EY921509       <-- TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
EY922138       <-- TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
FY449729       <-- TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
FY448780       <-- TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
FY428722       <-- TAAGCACTTCCTGCAAGCTGGCCATTTACAAACACATGAAGAGCATGTCC
FY449486       <-- ..................................CATGAAGAGCATGTCC
EX754771       <-- ..................................................
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> TAAGCACTTCCTGGCAGCTGGCCATTTACAAACACATGAAGAGCATGTCC

               899    -    949
UN23413        --> AGCTGACCAAATGGTAAGAAGAGGAAAA-TCACCAGTCTTCAAAAACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................  Raphanus sativus var. oleiformis
EY933611       <-- ..................................................  Raphanus sativus var. oleiformis
EV524958       <-- AGCTGACCAGACGGTAAGAAGAGGAAAA-TCACCGGTCTTCAAAAACCTC  Raphanus raphanistrum subsp. maritimus
EY921509       <-- AGCTGACCAGACGGTAAGAAGAGGCAAA-TCACCAGTCTTCAAAAACCTC  Raphanus raphanistrum subsp. landra
EY922138       <-- AGCTGACCAGACGGTAAGAAGAGGCAAA-TCACCAGTCTTCAAAAACCTC  Raphanus raphanistrum subsp. landra
FY449729       <-- AGCTGACCAAATGGTAAGAAGAGGAAAA-TCACCAGTCTTCAAAAACCTC  Raphanus sativus cv GSK3-1
FY448780       <-- AGCTGACCAAATGGTAAGAAGAGGAAAA-TCACCAGTCTTCAAAAACCTC  Raphanus sativus cv GSK3-1
FY428722       <-- AGCTGACCAAATGGTAAGAAGAGGAAAA-TCACCAGTCTTCAAAAACCTC  Raphanus sativus cv GSK3-1
FY449486       <-- AGCTGACCAAATGGTAAGAAGAGGAAAA-TCACCAGTCTTCAAAAACCTC  Raphanus sativus cv GSK3-1
EX754771       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> ..................................................  Raphanus sativus var. oleiformis
FY430096       --> ..................................................  Raphanus sativus cv GSK3-1
FY447432       --> ..................................................  Raphanus sativus cv GSK3-1
FY447700       --> ..................................................  Raphanus sativus cv GSK3-1
FY444759       --> ..................................................  Raphanus sativus cv GSK3-1
EX759024       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> ..................................................  Raphanus sativus var. oleiformis
EY917639       --> ..................................................  Raphanus raphanistrum subsp. landra
EY918158       --> ..................................................  Raphanus raphanistrum subsp. landra
FD546483       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> AGCTGACCAAATGGTAAGAAGAGGAAAAATCA-CAGTCTTCAAAAACCTC  Raphanus sativus cv GSK3-1

               949    -    999
UN23413        --> TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
EY921509       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
EY922138       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
FY449729       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
FY448780       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
FY428722       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
FY449486       <-- TCACCAGCACCAATTGTGATGTCTGTTAGATACCAGAAATAGTCAGACTT
EX754771       <-- ..................................................
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> TCACCAG...........................................

               999    -   1049
UN23413        --> GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
EY921509       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
EY922138       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
FY449729       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
FY448780       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
FY428722       <-- GTCCCAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAA.....
FY449486       <-- GTCACAAGTCATGCTTATCTGTTCCACAAGCCCGTTTCTTGCAAACGTAC
EX754771       <-- ........................................GCAAACGTAC
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1049   -   1099
UN23413        --> CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAACGATTCCCAAGAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................  Raphanus sativus var. oleiformis
EY933611       <-- ..................................................  Raphanus sativus var. oleiformis
EV524958       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAACGATTCCCAAGAGAAT  Raphanus raphanistrum subsp. maritimus
EY921509       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAATGATTCCCAc......  Raphanus raphanistrum subsp. landra
EY922138       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAATGATTCCCAc......  Raphanus raphanistrum subsp. landra
FY449729       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAACGATTCCCAAGAGAAT  Raphanus sativus cv GSK3-1
FY448780       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAACGATTCCCAAGAGAAT  Raphanus sativus cv GSK3-1
FY428722       <-- ..................................................  Raphanus sativus cv GSK3-1
FY449486       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAACGATTCCCAAGAGAAT  Raphanus sativus cv GSK3-1
EX754771       <-- CAGCTTCATTTGCAGAAGGAGACGCTTCATTGAATGATTCCCAAGAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW720315       --> ..................................................  Raphanus sativus var. oleiformis
FY430096       --> ..................................................  Raphanus sativus cv GSK3-1
FY447432       --> ..................................................  Raphanus sativus cv GSK3-1
FY447700       --> ..................................................  Raphanus sativus cv GSK3-1
FY444759       --> ..................................................  Raphanus sativus cv GSK3-1
EX759024       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY929038       --> ..................................................  Raphanus sativus var. oleiformis
EY917639       --> ..................................................  Raphanus raphanistrum subsp. landra
EY918158       --> ..................................................  Raphanus raphanistrum subsp. landra
FD546483       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445317       --> ..................................................  Raphanus sativus cv GSK3-1

               1099   -   1149
UN23413        --> CTTGTACCTGTTGGAACCATATTCCTGTGTATTCTTGGTGCATTAACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- CTTGTACCTGTTGGAACCATATTTCTGTGTATc.................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- CTTGTACCTGTTGGAACCATATTCCTGTGTATTCTTGGTGCATTAACCTT
FY448780       <-- CTTGTACCTGTTGGAACCATATTCCTGTGTATTCTTGGTGCATTAACCTT
FY428722       <-- ..................................................
FY449486       <-- CTTGTACCTGTTGGAACCATATTCCTGTGTATTCTTGGTGCATTAACCTT
EX754771       <-- CTTGTAC-TGTTGGAACCATATTCCTGTGTATTCTTGGTGCATTAACCTT
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1149   -   1199
UN23413        --> TGCGGTGTTATAATATTCTGTTTTGCAATCAGGTAAAATACTGACTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- TGCGGTGTTATAATATTCTGTTTTGCAATCAGGTAAAATACTGACTGACC
FY448780       <-- TGCGGTGTTATAATATTCTGTTTTGCAATCAGGTAAAATACTGACTGACC
FY428722       <-- ..................................................
FY449486       <-- TGCGGTGTTATAATATTCTGTTTTGCAATCAGGTAAAATACTGACTGACC
EX754771       <-- TGCGGTGTTGTAGTATTCTGTTTTGCAATCAGGTAAAATACTGACTGACC
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1199   -   1249
UN23413        --> AAGGAGGCAAATCATATGGGAATCCACGGAACATAACTCTCGCTGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- AAGGAGGCAAATCATATGGGAATCCACGGAACATAACTCTCGCTGCAGAG
FY448780       <-- AAGGAGGCAAATCATATGGGAATCCACGGAACATAACTCTCGCT......
FY428722       <-- ..................................................
FY449486       <-- AAGGAGGCAAATCATATGGGAATCCACGGAACATAACTCTCGCTGCAGAG
EX754771       <-- AAGGAGGCAAATCATATGGGAATCCACGGAACATAACTCTCGCTGCAGAG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1249   -   1299
UN23413        --> TTTGCATCGTTGTTCGATAAAAACGCAGCACAATGTGATTTAGACCAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- TTTGCATCGTTGTTCGATAAAAACGCAGCACAATGTGATTTAGACCAGAA
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- TTTGCATCGTTGTTCGATAAAAACGCAGCACAATGTGATTTAGACCAGAA
EX754771       <-- TTTGCATCGTTGTTCGATAAAAACGCAGCACAAGATGATTTAGACCAGAA
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1299   -   1349
UN23413        --> CACATGAGCCTCTTGTTTAGCTCCAAGATATGTGACGGTTGCATCAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- CACATGAGCCTCTTGTTTAGCTCCAAGATATGTGACGGTg..........
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- CACATGAGCCTCTTGTTTAGCTCCAAGATATGTGACGGTTGCATCAGCAG
EX754771       <-- CACATGAGCCTCTTGTTTAGCTCCAAGATATGTGACGGTTGCATCAGCAG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1349   -   1399
UN23413        --> AAACCAAAGCTGGCTCGCTGAGCTTGATGACTTTATGTAATGCTTTTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- AAACCAAAGCTGGCTCGCTGAGCTTGATGACTTTATGTAATGCTTTTAAG
EX754771       <-- AAACCAAAGCTGGCTCGCTGAGCTTGATGACTTTACGCAAGGCTTTCAAA
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1399   -   1449
UN23413        --> TGACTATACTTTGGTTCTCTTGTTAAGCCGTATTCATCTAGAGGAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- TGACTATACTTCGGTTCTCTTATTAAGCCGTATTCATCTAGAGGAGCGTC
EX754771       <-- TGACTATACTTTGGTTCTCTTGTTAAGCCGTATTCATCTAGAGGAGCGTC
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1449   -   1499
UN23413        --> GTAGTCATAGCTTGATGCCATGAACTCACCAGCTGTTCTGTCGAAATTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- GTAGTCATAGCTTGATGCCATGAACTCACCAGCTGTTCTGTCGAAATTCG
EX754771       <-- ATAGTCATAGCTTGATGCCATGAACTCACCAGCTGTTCTGTCGAAATTCG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1499   -   1549
UN23413        --> TCCCTCCATGATACATATAGTAATTGACAAAGGAACCTCCGTTTTGTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- TCCCTCCATGATACATATAGTAATTGACAAAGGAACCTCCGTTTTGTATG
EX754771       <-- TCCCTCCATGATACATATAGTAATTGACAAAGGAACCTCCGTTTTGTATG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1549   -   1599
UN23413        --> AATCTTGCAACTGAGTATGCAATATCTTCAACTGGTCTATACGGTACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- AATCTTGCAACTGAGTATGCAATATCTTCAACTGGTCTATACGGTACAGC
EX754771       <-- AATCTTGCAACTGAGTATGCAATATCTTCAACTGGTCTATACGGTACAGC
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1599   -   1649
UN23413        --> CCCTCCAAACTCTGTATACCAACCAGTCCAGTTCTCTGTCCACATCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- CCCTCCAAACTCTGTATACCAACCAGTCCAGTTCTCTGTCCACATCTTTG
EX754771       <-- CCCTCCAAACTCTGTATACCAACCAGTCCAGTTCTCTGTCCACATTTTCG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1649   -   1699
UN23413        --> GCTTGTTGTTTGAGTTCGGTTTGAAATTCTCACAGTAATAACCATTGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- GCTTGTTATTTGAGTTCGGTTTGAAATTCTCACAGTAATAACCATTGCAC
EX754771       <-- GCTTGTTGTTTGAGTTCGGTTTGAAATTCTCACAGTAATAACCATTGCAC
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1699   -   1749
UN23413        --> GTGTCTATAATAGGAGAAGGAGCATCCTCTTGCTTGCACATAATCCATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- ..................................................
EY933611       <-- ..................................................
EV524958       <-- ..................................................
EY921509       <-- ..................................................
EY922138       <-- ..................................................
FY449729       <-- ..................................................
FY448780       <-- ..................................................
FY428722       <-- ..................................................
FY449486       <-- GTGTCTA...........................................
EX754771       <-- GTGTCTATAATAGGAGAAGGAGCATCCTCTTGCTTGCACATAATCCATGG
EW720315       --> ..................................................
FY430096       --> ..................................................
FY447432       --> ..................................................
FY447700       --> ..................................................
FY444759       --> ..................................................
EX759024       --> ..................................................
EY929038       --> ..................................................
EY917639       --> ..................................................
EY918158       --> ..................................................
FD546483       --> ..................................................
FY445317       --> ..................................................

               1749   -   1799
UN23413        --> AACACCTGTTGAGAGTCCTAATGCCATTTGAGCTACCCATTTCGTGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW715813       <-- .................................................
EY933611       <-- .................................................
EV524958       <-- .................................................
EY921509       <-- .................................................
EY922138       <-- .................................................
FY449729       <-- .................................................
FY448780       <-- .................................................
FY428722       <-- .................................................
FY449486       <-- .................................................
EX754771       <-- AACACCTGTTGAGAGTCCTAATGCCATTTGAGCTACCCATTTCGTGTAC
EW720315       --> .................................................
FY430096       --> .................................................
FY447432       --> .................................................
FY447700       --> .................................................
FY444759       --> .................................................
EX759024       --> .................................................
EY929038       --> .................................................
EY917639       --> .................................................
EY918158       --> .................................................
FD546483       --> .................................................
FY445317       --> .................................................