RadishBase

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Alignment for radish unigene UN23424

               1      -     51
UN23424        --> GGATATCAATAAAACTATATCAATTTTCAGGTACCACGCTGGAAATCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- ..................................................  Raphanus sativus cv GSK3-1
EV570744       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD565797       <-- ..................................................  Raphanus sativus var. oleiformis
EV531517       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD958830       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566625       <-- ..................................................  Raphanus sativus var. oleiformis
EV570745       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD566305       <-- ..................................................  Raphanus sativus var. oleiformis
EX761587       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553520       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY903929       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> GGATATCAATAAAACTATATCAATTTTCAGGTACCACGCTTTAAATCTTC  Raphanus sativus var. oleiformis
FD561711       --> ..ggATCAATAAAACTATATCAATTTTCAGGTACCACGCTTTAAATCTTC  Raphanus sativus var. oleiformis
FD562808       --> ...gATCAATAAAACTATATCAATTTTCAGGTACCACGCTTTAAATCTTC  Raphanus sativus var. oleiformis
EV527214       --> ........................................GGAAATCTTC  Raphanus raphanistrum subsp. maritimus
EV565435       --> ........................................GGAAATCTTC  Raphanus raphanistrum subsp. landra
EY907009       --> ........................................GGAAATCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> ........................................GGAAATCTTC  Raphanus raphanistrum subsp. maritimus
FD972222       --> .......................................gGGAAATCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> ...................................cgggggaAAATCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> ..................................................  Raphanus raphanistrum subsp. landra
EV534951       --> ...........................................ggatatc  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> ..................................................  Raphanus raphanistrum subsp. landra
EX758174       --> ...........................................ggatatc  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> ................................................gg  Raphanus sativus var. oleiformis
FD987925       --> .............................................ggatc  Raphanus raphanistrum subsp. landra
FD939678       --> ..................................................  Raphanus sativus var. oleiformis
FD557422       --> ..................................................  Raphanus raphanistrum subsp. landra

               51     -    101
UN23424        --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- ..................................................  Raphanus sativus cv GSK3-1
EV570744       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD565797       <-- ..................................................  Raphanus sativus var. oleiformis
EV531517       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD958830       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566625       <-- ..................................................  Raphanus sativus var. oleiformis
EV570745       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD566305       <-- ..................................................  Raphanus sativus var. oleiformis
EX761587       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553520       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY903929       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus sativus var. oleiformis
FD561711       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus sativus var. oleiformis
FD562808       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus sativus var. oleiformis
EV527214       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAAATATGTCGACGGACTCG  Raphanus raphanistrum subsp. maritimus
EV565435       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus raphanistrum subsp. landra
EY907009       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAAATATGTCGACGGACTCG  Raphanus raphanistrum subsp. maritimus
FD972222       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> TGTTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> ..TTTCCAAATACTCTTTCCAAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus raphanistrum subsp. landra
EV534951       --> aataaaactgtatcaattttcAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> .......gggtatcaattttcAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus raphanistrum subsp. landra
EX758174       --> aataaaactgtatcaattttcAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> .......cggtatcaattttcAGGAACGAAAAGATATGTCCACGGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> aataaaactatatcaattttcAGGAACGAAAAGATATGTCGACGGACTCG  Raphanus sativus var. oleiformis
FD987925       --> aataaaactgtatcagttttcAGGAACGAAAAAATATGTCGACGGACTCG  Raphanus raphanistrum subsp. landra
FD939678       --> ..................................................  Raphanus sativus var. oleiformis
FD557422       --> ..................................................  Raphanus raphanistrum subsp. landra

               101    -    151
UN23424        --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................AAACT-GGAGAGCT-CTCACCAAGAAATCGGA
FY440864       <-- ........................................AGAAATCGGA
EV570744       <-- ..................................................
FD565797       <-- ..................................................
EV531517       <-- ..................................................
FD958830       <-- ..................................................
FD566625       <-- ..................................................
EV570745       <-- ..................................................
FD566305       <-- ..................................................
EX761587       <-- ..................................................
FD983882       <-- ..................................................
FD553520       <-- ..................................................
EY903929       <-- ..................................................
EY901578       <-- ..................................................
FD562380       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD561711       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD562808       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EV527214       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EV565435       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EY907009       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD962239       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD972222       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCAGA
EY908183       --> TA-GAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EV565434       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EV534951       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EV567024       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EX758174       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EY905054       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
EY930592       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD987925       --> TACGAAGATGCCCTTAAAAAACTTGGAGAGCTTCTCACCAAGAAATCGGA
FD939678       --> ..................................................
FD557422       --> ..................................................

               151    -    201
UN23424        --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FY440864       <-- TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV570744       <-- .......AACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD565797       <-- .....................AAAGATCAAGCAGTTAACCAGTGAGCTAG
EV531517       <-- ..................................................
FD958830       <-- ..................................................
FD566625       <-- ..................................................
EV570745       <-- ..................................................
FD566305       <-- ..................................................
EX761587       <-- ..................................................
FD983882       <-- ..................................................
FD553520       <-- ..................................................
EY903929       <-- ..................................................
EY901578       <-- ..................................................
FD562380       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD561711       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACCAGTGAGCTAG
FD562808       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV527214       --> TCTAGGTAACGTCGCAGCGGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV565435       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EY907009       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD962239       --> TCTAGGTAACGTCGCAGCGGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD972222       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EY908183       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV565434       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV534951       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EV567024       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EX758174       --> TCTAGGTAACGTCGCAGCCGCAAGGATCAAGCAGTTAACTAGTGAGCTAG
EY905054       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
EY930592       --> TCTAGGTAACGTCGCAGCCGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD987925       --> TCTAGGTAACGTCGCATCGGCAAAGATCAAGCAGTTAACTAGTGAGCTAG
FD939678       --> ...............................................gAG
FD557422       --> ..................................................

               201    -    251
UN23424        --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FY440864       <-- AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV570744       <-- AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD565797       <-- AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV531517       <-- ..................................................
FD958830       <-- ..................................................
FD566625       <-- ..................................................
EV570745       <-- ..................................................
FD566305       <-- ..................................................
EX761587       <-- ..................................................
FD983882       <-- ..................................................
FD553520       <-- ..................................................
EY903929       <-- ..................................................
EY901578       <-- ..................................................
FD562380       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD561711       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD562808       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV527214       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV565435       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EY907009       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD962239       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD972222       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EY908183       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV565434       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV534951       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EV567024       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EX758174       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EY905054       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
EY930592       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD987925       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAATTCTGGA
FD939678       --> AGGAACTTGATTCCAGCAAGATAGATTCTGTAGAAAGGATCAAGTCTGGA
FD557422       --> ..................................................

               251    -    301
UN23424        --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus sativus cv GSK3-1
EV570744       <-- TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra
FD565797       <-- TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
EV531517       <-- .........TTCAAGACTCATAATTATGAGAAGAATCTTTCGTTGTACAG  Raphanus raphanistrum subsp. maritimus
FD958830       <-- ..........................TGAGAAGAATCTTTCGTTGCACAG  Raphanus raphanistrum subsp. maritimus
FD566625       <-- ........................................CGTTGTACAG  Raphanus sativus var. oleiformis
EV570745       <-- ..........................................TTGTACAG  Raphanus raphanistrum subsp. landra
FD566305       <-- ...........................................TGTACAG  Raphanus sativus var. oleiformis
EX761587       <-- ............................................GTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553520       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY903929       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
FD561711       --> TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
FD562808       --> TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
EV527214       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. maritimus
EV565435       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra
EY907009       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGCACAG  Raphanus raphanistrum subsp. maritimus
FD972222       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra
EV534951       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra
EX758174       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
FD987925       --> TTCAACCATTTCAAGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra
FD939678       --> TTCAACCATTTCAAGACTCATAATTATGAGAAAAATCCTTCGTTGTACAG  Raphanus sativus var. oleiformis
FD557422       --> .............gGACTCATAATTATGAGAAGAATCCTTCGTTGTACAG  Raphanus raphanistrum subsp. landra

               301    -    351
UN23424        --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FY440864       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV570744       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD565797       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV531517       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD958830       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCAG
FD566625       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV570745       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD566305       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EX761587       <-- TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD983882       <-- ...ACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD553520       <-- ..........AAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EY903929       <-- ..................................................
EY901578       <-- ..................................................
FD562380       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD561711       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD562808       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV527214       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV565435       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EY907009       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD962239       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCAG
FD972222       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EY908183       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV565434       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV534951       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EV567024       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EX758174       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EY905054       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
EY930592       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD987925       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD939678       --> TGCACTTGTCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG
FD557422       --> TGCACTTGCCAAGAGCCAGAGCCCCAAGTTTCTGGTGTTTGCTTGTGCGG

               351    -    401
UN23424        --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FY440864       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV570744       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD565797       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV531517       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD958830       <-- ATTCTCGAGTTTGCCCGTCCCACATCTTGAATTTTCAACTTGGGGAAGCA
FD566625       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV570745       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD566305       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EX761587       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD983882       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD553520       <-- ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EY903929       <-- ...............................TTTTCAACTTGGGGAAGCA
EY901578       <-- ..................................................
FD562380       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD561711       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD562808       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV527214       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV565435       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EY907009       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD962239       --> ATTCTCGAGTTTGCCCGTCCCACATCTTGAATTTTCAACTTGGGGAAGCA
FD972222       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EY908183       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV565434       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV534951       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EV567024       --> ATTCTCGAGTTTGCCCGCCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EX758174       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EY905054       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
EY930592       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD987925       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD939678       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA
FD557422       --> ATTCTCGAGTTTGCCCGTCTCACATCTTGAATTTTCAACTTGGGGAAGCA

               401    -    451
UN23424        --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TTTATCGTTAGAAACGTTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus cv GSK3-1
EV570744       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
FD565797       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
EV531517       <-- TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. maritimus
FD958830       <-- TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. maritimus
FD566625       <-- TATATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
EV570745       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
FD566305       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
EX761587       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
FD553520       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
EY903929       <-- TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
FD561711       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
FD562808       --> TATATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
EV527214       --> TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. maritimus
EV565435       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
EY907009       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. maritimus
FD972222       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
EV534951       --> TTTATCGTTAGAAACGTTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
EX758174       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTAT--TAAGACAAA  Raphanus sativus var. oleiformis
FD987925       --> TTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra
FD939678       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus sativus var. oleiformis
FD557422       --> TTTATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGATAAGACAAA  Raphanus raphanistrum subsp. landra

               451    -    501
UN23424        --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FY440864       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAGTCACAGTCCTCAATG
EV570744       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD565797       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV531517       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD958830       <-- ACACTGTAATATTGATGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD566625       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV570745       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD566305       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTTCTCAATG
EX761587       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD983882       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD553520       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACGGTCCTCAATG
EY903929       <-- ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EY901578       <-- ..................................................
FD562380       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTTCTCAATG
FD561711       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD562808       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV527214       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV565435       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EY907009       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD962239       --> ACACTGTAATATTGATGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD972222       --> ACACAGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EY908183       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV565434       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV534951       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EV567024       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAGTCACAGTCCTCAATG
EX758174       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EY905054       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
EY930592       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD987925       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD939678       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACAGTCCTCAATG
FD557422       --> ACACTGTAATATTGGTGCCGCCCTTGAATATCCAATCACGGTCCTCAATG

               501    -    551
UN23424        --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FY440864       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV570744       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD565797       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV531517       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD958830       <-- TGGAGAGCATTCTGGTGATTGGTTCCA-GCTGTTGTGGTGGAATAAAAGG
FD566625       <-- TGGAGAGCATTTTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV570745       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD566305       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGCTGTGGTGGAATAAAAGG
EX761587       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD983882       <-- TGGAGAGCATTCTGGTGATTGGTCACAAGCTGTTGTGGTGGAATAAAAGG
FD553520       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY903929       <-- TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY901578       <-- ....GAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD562380       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGCTGTGGTGGAATAAAAGG
FD561711       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD562808       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV527214       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV565435       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY907009       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD962239       --> TGGAGAGCATTCTGGTGATTGGTTCCA-GCTGTTGTGGTGGAATAAAAGG
FD972222       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY908183       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATA.....
EV565434       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV534951       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EV567024       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EX758174       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY905054       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
EY930592       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD987925       --> TGGAGAGCATTCTGGTGATTGGTCACAAGCTGTTGTGGTGGAATAAAAGG
FD939678       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG
FD557422       --> TGGAGAGCATTCTGGTGATTGGTCACA-GCTGTTGTGGTGGAATAAAAGG

               551    -    601
UN23424        --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus cv GSK3-1
EV570744       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
FD565797       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
EV531517       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. maritimus
FD958830       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. maritimus
FD566625       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
EV570745       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
FD566305       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTAAATTCATAG  Raphanus sativus var. oleiformis
EX761587       <-- ACTCATGGCAATTGAAGACGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. landra
FD553520       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
EY903929       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTAAATTCATAG  Raphanus sativus var. oleiformis
FD561711       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
FD562808       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
EV527214       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. maritimus
EV565435       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
EY907009       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. maritimus
FD972222       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
EV534951       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra
EX758174       --> ACTCATGGCAATTGAAGACGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTATAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
FD987925       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATTG  Raphanus raphanistrum subsp. landra
FD939678       --> ACTCATGGCAGTTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus sativus var. oleiformis
FD557422       --> ACTCATGGCAATTGAAGATGATGCGGCTCCCTTTAAGAGTGAATTCATAG  Raphanus raphanistrum subsp. landra

               601    -    651
UN23424        --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FY440864       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EV570744       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD565797       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EV531517       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD958830       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD566625       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EV570745       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD566305       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EX761587       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD983882       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD553520       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EY903929       <-- AAGACTGGATCCAGATCTGTGCATCGGCCGAGAACAAGACCAGGCAGGAT
EY901578       <-- AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD562380       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD561711       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAG.......
FD562808       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGC.....
EV527214       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EV565435       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EY907009       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAG-AT
FD962239       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD972222       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EY908183       --> ..................................................
EV565434       --> AAGACTGGA.........................................
EV534951       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EV567024       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EX758174       --> AAGACTGG..........................................
EY905054       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
EY930592       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD987925       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD939678       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT
FD557422       --> AAGACTGGATCCAGATCTGTGCATCGGCCAAGAACAAGACCAGGCAGGAT

               651    -    701
UN23424        --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus sativus cv GSK3-1
EV570744       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra
FD565797       <-- TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus sativus var. oleiformis
EV531517       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. maritimus
FD958830       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. maritimus
FD566625       <-- TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus sativus var. oleiformis
EV570745       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra
FD566305       <-- TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus sativus var. oleiformis
EX761587       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra
FD553520       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra
EY903929       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCATCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAGGA-GC  Raphanus sativus var. oleiformis
FD561711       --> ..................................................  Raphanus sativus var. oleiformis
FD562808       --> ..................................................  Raphanus sativus var. oleiformis
EV527214       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. maritimus
EV565435       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra
EY907009       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAG--AGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGA.........  Raphanus raphanistrum subsp. maritimus
FD972222       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAAGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> ..................................................  Raphanus raphanistrum subsp. landra
EV534951       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAG-AAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAG-AAGC  Raphanus raphanistrum subsp. landra
EX758174       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAAGAAGC  Raphanus sativus var. oleiformis
FD987925       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAAGAAGC  Raphanus raphanistrum subsp. landra
FD939678       --> TGTAAAGACCTGAGCTTTGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus sativus var. oleiformis
FD557422       --> TGTAAAGACCTGAGCTTCGACGACCAGTGCACCAACTGTGAGAAGGAAGC  Raphanus raphanistrum subsp. landra

               701    -    751
UN23424        --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FY440864       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EV570744       <-- TGTGGACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD565797       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EV531517       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD958830       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD566625       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATTGTACCCGTTCGTGAGAGAGC
EV570745       <-- TGTGGACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD566305       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EX761587       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD983882       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD553520       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EY903929       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EY901578       <-- TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD562380       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EV565435       --> TGTGGACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EY907009       --> TGTGAACGTGTCGCTGGGGAACCTGTatcg....................
FD962239       --> ..................................................
FD972222       --> TGTGA-CGTGTCGCTGGGGA-CCTGTTATCGTACCCGTTCGTGAGAGAGC
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> TGTGA-CGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EV567024       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EX758174       --> ..................................................
EY905054       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
EY930592       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD987925       --> TGTGA-CGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD939678       --> TGTGAACGTGTCGTTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC
FD557422       --> TGTGAACGTGTCGCTGGGGAACCTGTTATCGTACCCGTTCGTGAGAGAGC

               751    -    801
UN23424        --> GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGA.......
FY440864       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EV570744       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD565797       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EV531517       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD958830       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD566625       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EV570745       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD566305       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EX761587       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD983882       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD553520       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EY903929       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EY901578       <-- GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
FD562380       --> GAGTG.............................................
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> GAGTGGTG..........................................
EV565435       --> GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG
EY907009       --> ..................................................
FD962239       --> ..................................................
FD972222       --> GAGTGGTGAAAA-CAAGCTCGC-AT-AGA-GCGCTCACTTTGATTTTGTG
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> GAGTGGTGAAAA-CAAGCTCGCCATAAGAG-CGCTCACTATGATTTTGTG
EV567024       --> GAGTGGTGAAAAACAAGCTTGCCATAAGAGGCGCTCACTATGATTTTGTG
EX758174       --> ..................................................
EY905054       --> GAGTGGTG..........................................
EY930592       --> GAGTG.............................................
FD987925       --> GAGTGGTGAAAA-CAAGCTCGCCATAAGAG-CGCTCACTATGATTTTGTG
FD939678       --> GAGTGGTGAAAAACAAGCTCGCCATAAGAG-CGCTCACTATGATTTTGTG
FD557422       --> GAGTGGTGAAAAACAAGCTCGCCATAAGAGGCGCTCACTATGATTTTGTG

               801    -    851
UN23424        --> AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................
FY440864       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EV570744       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD565797       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EV531517       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD958830       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD566625       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EV570745       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD566305       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCCCCCCAGCTTT
EX761587       <-- AAAGGGAC..........................................
FD983882       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD553520       <-- AAAGGGACGTTTGATTTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EY903929       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EY901578       <-- AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
FD562380       --> ..................................................
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> ..................................................
EV565435       --> AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EY907009       --> ..................................................
FD962239       --> ..................................................
FD972222       --> AAAGGGACGTTTGATCTCTGGGA-CTTGACTTCA-GACCACCC-AGCTTT
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> ..................................................
EV567024       --> AAAGG-ACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT
EX758174       --> ..................................................
EY905054       --> ..................................................
EY930592       --> ..................................................
FD987925       --> AA................................................
FD939678       --> AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAgacc............
FD557422       --> AAAGGGACGTTTGATCTCTGGGAACTTGACTTCAAGACCACCCCAGCTTT

               851    -    901
UN23424        --> TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................
FY440864       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
EV570744       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
FD565797       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
EV531517       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
FD958830       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
FD566625       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTTTATGTTGCTTCT
EV570745       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
FD566305       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
EX761587       <-- ..................................................
FD983882       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
FD553520       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
EY903929       <-- TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT
EY901578       <-- TGCCTTGTCATAAAAGAGTTCTA---CTGTTTTCTCTCTATGTTGCTTCT
FD562380       --> ..................................................
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> ..................................................
EV565435       --> TGCCTTGTCA........................................
EY907009       --> ..................................................
FD962239       --> ..................................................
FD972222       --> -G-CTTGTCATAAAgatctac.............................
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> ..................................................
EV567024       --> TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGCTGCTTCT
EX758174       --> ..................................................
EY905054       --> ..................................................
EY930592       --> ..................................................
FD987925       --> ..................................................
FD939678       --> ..................................................
FD557422       --> TGCCTTGTCATAAAAGAGTTCTACTCATGTTTTCTCTCTATGTTGCTTCT

               901    -    951
UN23424        --> AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440864       <-- AAGTGTGTTCTCA-GTTTCTCATCAAT.......................  Raphanus sativus cv GSK3-1
EV570744       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAAGCATCTTTCTTTATCTTCAGT  Raphanus raphanistrum subsp. landra
FD565797       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACC......  Raphanus sativus var. oleiformis
EV531517       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCAGT  Raphanus raphanistrum subsp. maritimus
FD958830       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCAGT  Raphanus raphanistrum subsp. maritimus
FD566625       <-- AAGTGTGTTTTCA-ATTTTTCATCAATAATCATCTTTCTTTACCTTCGGT  Raphanus sativus var. oleiformis
EV570745       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAAGCATCTTTCTTTATCTTCAGT  Raphanus raphanistrum subsp. landra
FD566305       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCGGT  Raphanus sativus var. oleiformis
EX761587       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983882       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTATCTTCAGT  Raphanus raphanistrum subsp. landra
FD553520       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAAGCATCTTTCTTTATCTTCAGT  Raphanus raphanistrum subsp. landra
EY903929       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901578       <-- AAGTGTGTTCTCA-ATTTCTCATCAATAATCATCTTTCTTTACCTTCAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD562380       --> ..................................................  Raphanus sativus var. oleiformis
FD561711       --> ..................................................  Raphanus sativus var. oleiformis
FD562808       --> ..................................................  Raphanus sativus var. oleiformis
EV527214       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV565435       --> ..................................................  Raphanus raphanistrum subsp. landra
EY907009       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962239       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972222       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908183       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565434       --> ..................................................  Raphanus raphanistrum subsp. landra
EV534951       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV567024       --> AAGTGTGTTCTCATATTTCat.............................  Raphanus raphanistrum subsp. landra
EX758174       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905054       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY930592       --> ..................................................  Raphanus sativus var. oleiformis
FD987925       --> ..................................................  Raphanus raphanistrum subsp. landra
FD939678       --> ..................................................  Raphanus sativus var. oleiformis
FD557422       --> AAGTGTGTTCTCA-ATTTCTCATCAATAAGCATCTTTCTTTATCTTCAGT  Raphanus raphanistrum subsp. landra

               951    -   1001
UN23424        --> TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................
FY440864       <-- ..................................................
EV570744       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
FD565797       <-- ..................................................
EV531517       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
FD958830       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
FD566625       <-- TTCTTGTCTTTTTTTGTTTTTTTACTCAACTTCAGTTTCTTGTATAATCT
EV570745       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
FD566305       <-- TTCTTGTCTTTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
EX761587       <-- ..................................................
FD983882       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
FD553520       <-- TTCTTGTCTCTTTTTGTTTTTCTACTCAACTTCAGTTTCTTGTATAATCT
EY903929       <-- TTCTTGTCTCTTTTTGTTTTTCTCCTCAACTTCAGTTTCTTGTATAATCT
EY901578       <-- TTCTTGTCTCTTTTTGTTTTTCTCCTCAACTTCAGTTTCTTGTATAATCT
FD562380       --> ..................................................
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> ..................................................
EV565435       --> ..................................................
EY907009       --> ..................................................
FD962239       --> ..................................................
FD972222       --> ..................................................
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> ..................................................
EV567024       --> ..................................................
EX758174       --> ..................................................
EY905054       --> ..................................................
EY930592       --> ..................................................
FD987925       --> ..................................................
FD939678       --> ..................................................
FD557422       --> TTCTTGTCTCTTTT-GTTTT-CTACTCAACTTCAGTTTCT-GTATAATCT

               1001   -   1051
UN23424        --> CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAACCAGCACTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539735       <-- ..................................................
FY440864       <-- ..................................................
EV570744       <-- CATCTTTTATGT......................................
FD565797       <-- ..................................................
EV531517       <-- CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAACCAGCACTTTATT
FD958830       <-- CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAACCAGCACTTT...
FD566625       <-- CATCTTTTATGTTTAAAATTAAATGAATAAGCTATAACa...........
EV570745       <-- CATCTTTTATGT......................................
FD566305       <-- CATCT.............................................
EX761587       <-- ..................................................
FD983882       <-- CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAAC............
FD553520       <-- CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAtaacc.........
EY903929       <-- CATCTTTTATGTTTTAAATTAAATGAATAATCTATAAC............
EY901578       <-- CATCTTTTATGTTTTAAATTAAATGAATAAGCTATAAC............
FD562380       --> ..................................................
FD561711       --> ..................................................
FD562808       --> ..................................................
EV527214       --> ..................................................
EV565435       --> ..................................................
EY907009       --> ..................................................
FD962239       --> ..................................................
FD972222       --> ..................................................
EY908183       --> ..................................................
EV565434       --> ..................................................
EV534951       --> ..................................................
EV567024       --> ..................................................
EX758174       --> ..................................................
EY905054       --> ..................................................
EY930592       --> ..................................................
FD987925       --> ..................................................
FD939678       --> ..................................................
FD557422       --> CATCTTT-ATGTTT--AATT-AATG-ATAAGCTATAtaaccaaaaaa...

               1051   -   1101
UN23424        --> TTCC
                   ~~~~
EV539735       <-- ....
FY440864       <-- ....
EV570744       <-- ....
FD565797       <-- ....
EV531517       <-- TTCC
FD958830       <-- ....
FD566625       <-- ....
EV570745       <-- ....
FD566305       <-- ....
EX761587       <-- ....
FD983882       <-- ....
FD553520       <-- ....
EY903929       <-- ....
EY901578       <-- ....
FD562380       --> ....
FD561711       --> ....
FD562808       --> ....
EV527214       --> ....
EV565435       --> ....
EY907009       --> ....
FD962239       --> ....
FD972222       --> ....
EY908183       --> ....
EV565434       --> ....
EV534951       --> ....
EV567024       --> ....
EX758174       --> ....
EY905054       --> ....
EY930592       --> ....
FD987925       --> ....
FD939678       --> ....
FD557422       --> ....