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Alignment for radish unigene UN23429

               1      -     51
UN23429        --> TGGTATTACAATGATGAGAATAATACAAAGACGATTATACAGCCGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> TGGTATTACAATGATGAGAATAATACAAAGACGATTATACAGCCGACAAT
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> ..................................................
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               51     -    101
UN23429        --> TCTACCATCTTGTGAGAATACACGCCTGATCAGGCACCTCTCCGAGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> TCTACCATCTTGTGAGAATACACGCCTGATCAGGCACCTCTCCGAGCCGT
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ...............................................ggt
FD568113       --> .............................................gtggt
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               101    -    151
UN23429        --> CCTATGAGATCCATGTTCTTTGGTAATGTTTTTTTATTAGAACTAGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> CCTATGAGATCCATGTTCTTTGGTAATGTTTTTTTATTAGAACTAGAAAT
EV540923       --> .............ggtagTTTAGTAATGTTTTTT-ATTAGAACTAGAAAT
EV573426       --> ................cgTTTAGTAATGTTTTTTTATTAGAACTAGAAAT
EY893284       --> ................agTTTAGTAATGTTTTTTTATTAAAACTAAAAAT
EY945041       --> tgtatcactttttagtagTTTAGTAATGTTTTTTTATTAGAACTAGAAAT
FD568113       --> tgtatcactttttagtagTTTAGTAATGTTTTTTTATTAGAACTAGAAAT
FD968206       --> ................ggTTTAGTAATGTTTTTT-ATTAGAACTAGAAAT
EV541014       --> .....................aGTAATGTTTTTT-ATTAGAACTAGAAAT
EX907900       --> .....................aGTAATGTTTTTTTATTAGAACTAGAAAT

               151    -    201
UN23429        --> CCAGATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> CCAGATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EV540923       --> ACAGATAAAAAAACTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EV573426       --> CCAGATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EY893284       --> CCAAATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EY945041       --> CCAGATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
FD568113       --> CCAGATAAAAAA-TTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
FD968206       --> ACAGATAAAAAAACTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EV541014       --> ACAGATAAAAAAACTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT
EX907900       --> CCAGATAAAAAAATTGCAATTGAAAGCCCAACCAATCAAACTAAATGTTT

               201    -    251
UN23429        --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
EV540923       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
EV573426       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
EY893284       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAAATGCTCTCC
EY945041       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
FD568113       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
FD968206       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
EV541014       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC
EX907900       --> TCCATTGAATTTGCGAAGGTAGCCTGGAGTTTGTTAACCAGATGCTCTCC

               251    -    301
UN23429        --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ................................................GA
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
EV540923       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
EV573426       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
EY893284       --> GTAAACAACTCTTTTGGAAACTTGAAATCTTTTATTTCCCGGGCCTTTGA
EY945041       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
FD568113       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
FD968206       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
EV541014       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA
EX907900       --> ATAGACAACTCTTTTGGAAACTTGAGATCTTTTATTTCCCGGGCCTTTGA

               301    -    351
UN23429        --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- AGATATCTAATGGTTCAGCCATTGCATCAAAGTTGAACTCGTAGAAGAAT
FD972297       <-- ..................................................
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> AGATATCTAATGGTTCAGCCATTGCATCAAAGTTGAACTCGTAGAAGAAT
EV540923       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAAAAT
EV573426       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGATCTCGTAGAAGAAT
EY893284       --> AAATATCCAATGGTTCAGCCATTGCATCAAAGTTGAACTCGTAAAAAAAT
EY945041       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAGAAT
FD568113       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAAAAAAAT
FD968206       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAGAAT
EV541014       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAGAAT
EX907900       --> AGATATCCAATGGTTCAGCCATCGCATCAAAGTTGAACTCGTAGAAGAAT

               351    -    401
UN23429        --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
FD972297       <-- .........................agagtaTGATCACTCTATGAATTGT
FD564698       <-- ..................................................
EW733864       <-- ..................................................
EV568777       <-- ..................................................
EX758052       <-- ..................................................
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
EV540923       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
EV573426       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
EY893284       --> CCGACGCATACACGGTATCGAGGAAAGTTATTGATCACTCTATGAATTGT
EY945041       --> CCGACGCATACACAGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
FD568113       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
FD968206       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
EV541014       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT
EX907900       --> CCGACGCATACACGGTATCGAGGAGAGTTATTGATCACTCTATGAATTGT

               401    -    451
UN23429        --> GGATTCATATACTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- GGATTCATATACTCCATTTGAAAGTATCTTTAGCATGTCACCGATGTTGC
FD972297       <-- GGAT-CATATACTCCATT-GAAAGTATCT-CAACATGTCACCGATGT-GC
FD564698       <-- GGATTCATATACTCCATT-GAAAGTATCTT-AACATGTCACCGATGT-GC
EW733864       <-- gtgaTCATATACTCCATT-GAAAGTATCTT-AACATGTCAC-GATGT-GC
EV568777       <-- ..........................TCTTTAACATGTCACCGATGTTGC
EX758052       <-- ............................................TGTTGC
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> GGATTCATATACTCCATTTGAAAGTATCTTTAGCATGTCACCGATGTTGC
EV540923       --> GGATTCATATACTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC
EV573426       --> GGATTCATATTCTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC
EY893284       --> GGATTCATATACTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC
EY945041       --> GGATTCATATACTCCATTTGAAAGTATCTTCAACATGTCACCGATGTTGC
FD568113       --> GGATTCATATACTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC
FD968206       --> GGATTCATATACTCCATTTGAAAGTATCTTCAACATGTCACCGATGTTGC
EV541014       --> GGATTCATATACTCCATTAGAAAGTATCTTTAACATGTCACCGATGTTGC
EX907900       --> GGATTCATATACTCCATTTGAAAGTATCTTTAACATGTCACCGATGTTGC

               451    -    501
UN23429        --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- AAATAAATGATCCAGGGGTCGGAGTAACTGATATCCAACCACCGGCCAAG
FD972297       <-- AAATAA-TGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
FD564698       <-- AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACTACCGGCCAAG
EW733864       <-- -AATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EV568777       <-- AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EX758052       <-- AA-TAAATGATCCAGGGATCGGAGTAACTGATATCCAACCAC-GGCCAAG
FD569345       <-- ..................................................
EY949544       <-- ..................................................
EY896823       <-- ..................................................
EV536487       <-- ..................................................
EX771659       <-- ..................................................
FD938827       <-- ..................................................
EY935116       --> AAATAAATGATCCAGGGGTCGGAGTAACTGATATCCAACCACCGGCCAAG
EV540923       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EV573426       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EY893284       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EY945041       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
FD568113       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACTACCGGCCAAG
FD968206       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EV541014       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG
EX907900       --> AAATAAATGATCCAGGGATCGGAGTAACTGATATCCAACCACCGGCCAAG

               501    -    551
UN23429        --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Early Scarlet Globe
FD972297       <-- T-C-TCA-CTGAAGAGCAGTTT-ATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564698       <-- TTCTTCAC-TGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus var. oleiformis
EW733864       <-- T-C-TCA-CTGAAGAGCAGTTT-ATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Rat-Tail Radish #3870
EV568777       <-- TTCTTCAC-TGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus raphanistrum subsp. landra
EX758052       <-- T-C-TCA-CTGAAGAGCAGTTT-ATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569345       <-- ..CTTCAC-TGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Early Scarlet Globe
EY949544       <-- agttctcaCTGAAGAGCAGTTT-ATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Rat-Tail Radish #3870
EY896823       <-- ...........AAGAGCAGTTT-ATCATCATCTTGATTTATTAGCGACAA  Raphanus raphanistrum subsp. maritimus
EV536487       <-- ............AGAGCAGCTTTATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX771659       <-- ............AGAGCAGTTT-ATCATCATCTTGATTTATTAGCGACAA  Raphanus raphanistrum subsp. landra
FD938827       <-- ..................................................  Raphanus sativus var. oleiformis
EY935116       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Early Scarlet Globe
EV540923       --> TTCTTCACCTGAAGAGCAGCTTTATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573426       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus raphanistrum subsp. landra
EY893284       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus raphanistrum subsp. maritimus
EY945041       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Rat-Tail Radish #3870
FD568113       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus var. oleiformis
FD968206       --> TTCTTCACCTGAAGAGCAGTTTTATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541014       --> TTCTTCACCTGAAGAGCAGTTTTATCTTCATCTTGATTTATAAGCGACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907900       --> TTCTTCACCTGAAGAGCAGTTTTATCATCATCTTGATTTATTAGCGACAA  Raphanus sativus cv Rat-Tail Radish #3870

               551    -    601
UN23429        --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Early Scarlet Globe
FD972297       <-- CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD564698       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTG  Raphanus sativus var. oleiformis
EW733864       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Rat-Tail Radish #3870
EV568777       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. landra
EX758052       <-- CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569345       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Early Scarlet Globe
EY949544       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Rat-Tail Radish #3870
EY896823       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. maritimus
EV536487       <-- CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX771659       <-- CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. landra
FD938827       <-- ..................................................  Raphanus sativus var. oleiformis
EY935116       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Early Scarlet Globe
EV540923       --> CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573426       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. landra
EY893284       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. maritimus
EY945041       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Rat-Tail Radish #3870
FD568113       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTG  Raphanus sativus var. oleiformis
FD968206       --> CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541014       --> CAAGCCATAGTCAGTATGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907900       --> CAAGCCATAGTCAGTGTGAGCTCCACATCCGATAACATTTTCTTGGTTTA  Raphanus sativus cv Rat-Tail Radish #3870

               601    -    651
UN23429        --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
FD972297       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
FD564698       <-- CACCTGGATAACCAATAATACGCATTATCAAAAAA-GGGTCTCCAACCAG
EW733864       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EV568777       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EX758052       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
FD569345       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAAAGGGTCTCCAACCAG
EY949544       <-- CACCTGGATAACCAATA--ACGCATTATCCAAAAA-GGGTCTCCAACCAG
EY896823       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EV536487       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EX771659       <-- CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
FD938827       <-- .....GGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EY935116       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA...............
EV540923       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EV573426       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EY893284       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EY945041       --> CACCTGGATAACCAATAA--CGCATTATCCAAAAA-GGGTCTCCAACCAG
FD568113       --> CACCTGGATAACCAATAATACGCATTATCAAAAAA-GGGTCTCCAACCAG
FD968206       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EV541014       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG
EX907900       --> CACCTGGATAACCAATAATACGCATTATCCAAAAA-GGGTCTCCAACCAG

               651    -    701
UN23429        --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
FD972297       <-- TTTTCCCTCAAATTCATAAGGTGATCCTCCAAGAGCTAAGGAGATTCCTC
FD564698       <-- TTTTCCCTCAAATTTATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EW733864       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EV568777       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EX758052       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
FD569345       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EY949544       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EY896823       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EV536487       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EX771659       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
FD938827       <-- TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EY935116       --> ..................................................
EV540923       --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EV573426       --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EY893284       --> TTTTCCCTCAAATTCATAAGGTGATCCCC.....................
EY945041       --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
FD568113       --> TTTTCCCTCAAATTTATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
FD968206       --> TTTTCCCTCAAATTCATAA...............................
EV541014       --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC
EX907900       --> TTTTCCCTCAAATTCATAAGGTGATCCCCCAAGAGCTAAGGAGATTCCTC

               701    -    751
UN23429        --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD972297       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD564698       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EW733864       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EV568777       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTCAATATACTCATCCATC
EX758052       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD569345       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EY949544       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EY896823       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EV536487       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EX771659       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD938827       <-- TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EY935116       --> ..................................................
EV540923       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EV573426       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTCAATATACTCATCCATC
EY893284       --> ..................................................
EY945041       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD568113       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
FD968206       --> ..................................................
EV541014       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC
EX907900       --> TGAGGATGTTTCTAGATAGATCTATGCATAGCTTAATATACTCATCCATC

               751    -    801
UN23429        --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
FD972297       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
FD564698       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EW733864       <-- ACTTCTTTGTACTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EV568777       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EX758052       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCC-CCCAT
FD569345       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EY949544       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EY896823       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTCGGCCCTTCCAT
EV536487       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EX771659       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
FD938827       <-- ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EY935116       --> ..................................................
EV540923       --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EV573426       --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EY893284       --> ..................................................
EY945041       --> ACTTCTTTGTAGTCT...................................
FD568113       --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
FD968206       --> ..................................................
EV541014       --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT
EX907900       --> ACTTCTTTGTAGTCTTGAGGATTATCTGGCCACTGGTTTGGCCCTTCCAT

               801    -    851
UN23429        --> GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
FD972297       <-- GACCTTTCCAGTTTATCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
FD564698       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EW733864       <-- GACCTTTCCAGCTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EV568777       <-- GACCTTTCCAGTTTCTCCATACTTGCCTTGCTCGAACTCTCTGTAACAAT
EX758052       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
FD569345       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EY949544       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EY896823       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EV536487       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EX771659       <-- GACCTTTCCAGTTTCTCCATACTTGCCTTGCTCGAACTCTCTGTAACAAT
FD938827       <-- GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EY935116       --> ..................................................
EV540923       --> GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EV573426       --> GACCTTTCCAGTTTCTCCATACTTGCCTTGCTCGAACTCTCTGTAACAAT
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
FD968206       --> ..................................................
EV541014       --> GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT
EX907900       --> GACCTTTCCAGTTTCTCCATACTTTCCTTGCTCGAACTCTCTGTAACAAT

               851    -    901
UN23429        --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCT---C--
FD972297       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
FD564698       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EW733864       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EV568777       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EX758052       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
FD569345       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EY949544       <-- CAGTTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EY896823       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EV536487       <-- CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EX771659       <-- CAATTGCTTCGTGAAAATCTTGTTTTCCATTCGTAAAGTTTTCTCCAATT
FD938827       <-- CAATTGCTGCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EY935116       --> ..................................................
EV540923       --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EV573426       --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
FD968206       --> ..................................................
EV541014       --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT
EX907900       --> CAATTGCTTCGTGAAAATCTTGTTTCCCATTCGTAAAGTTTTCTCCAATT

               901    -    951
UN23429        --> CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- --CTCATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
FD972297       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
FD564698       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EW733864       <-- CTCTGATATCCTCTGTATCCAGCTGCCGGTTTAATCTTGATCTTAAGTTT
EV568777       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EX758052       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
FD569345       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EY949544       <-- CGCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTC
EY896823       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EV536487       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EX771659       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
FD938827       <-- CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCCTGATCTTAAGTTT
EY935116       --> ..................................................
EV540923       --> CTCT..............................................
EV573426       --> CTCTGATATCCTCTGTATCCAGCTGCTGGT....................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> CTCTGATATCCTCTGTATCCAGCTGCTGGTTTA-TCTTGATCTTA-GTTT
FD968206       --> ..................................................
EV541014       --> CTCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT
EX907900       --> CGCTGATATCCTCTGTATCCAGCTGCTGGTTTAATCTTGATCTTAAGTTT

               951    -   1001
UN23429        --> CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- CTCCTCATAcc.......................................
FD972297       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
FD564698       <-- CTCCTCATATGGAAGCTTGTAGAATTGATGTGACATCTCTTTC-CCTTCT
EW733864       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EV568777       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EX758052       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
FD569345       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EY949544       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EY896823       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EV536487       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EX771659       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
FD938827       <-- CTCCTCATATGGAAGCTTGAAGAATTGATGTGACATCTCTTTCACCTTCT
EY935116       --> ..................................................
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> CTC-TCATATGGAgctt.................................
FD968206       --> ..................................................
EV541014       --> CTCCTCATATGGAAGCTTGA..............................
EX907900       --> CTCCTCATATGGAAGCTTGAA.............................

               1001   -   1051
UN23429        --> TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
FD564698       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EW733864       <-- TCATAAGACTCTCAGAAAT--TATGGTCAGTCACGTAGAAGAAACCGACG
EV568777       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EX758052       <-- TCATAAGACTCTTAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
FD569345       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EY949544       <-- TCATAAGACTCTCACAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EY896823       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EV536487       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EX771659       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
FD938827       <-- TCATAAGACTCTCAGAAATTCCATGGTCAGTCACGTAGAAGAAACCGACG
EY935116       --> ..................................................
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> ..................................................
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               1051   -   1101
UN23429        --> TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTAGGCAACGCCGGCATC
FD564698       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EW733864       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EV568777       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EX758052       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
FD569345       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EY949544       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EY896823       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EV536487       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EX771659       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
FD938827       <-- TCCCGACAAGCTCGGTCTAGTCTACGGACAACCTCGGCAACGCCGGCATC
EY935116       --> ..................................................
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> ..................................................
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               1101   -   1151
UN23429        --> TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
FD564698       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EW733864       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EV568777       <-- TTCCTTCATGCTGGGATCATTGCATTTGACTAGCAAAGGGCTGATGTCAA
EX758052       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
FD569345       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EY949544       <-- TTCATTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EY896823       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EV536487       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EX771659       <-- TTCCTTCATGCTGGGATCATTGCATTTGGCTAGCAAAGGGCTGATGTCAA
FD938827       <-- TTCCTTCATGCTGGGATCATCGCATTTGACTAGTAAAGGGCTGATGTCAA
EY935116       --> ..................................................
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> ..................................................
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               1151   -   1201
UN23429        --> TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ..................................................
FD972297       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATACATCTCAGATTCTTAGAGA
FD564698       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCGGATTCTTAGAGA
EW733864       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
EV568777       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
EX758052       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
FD569345       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
EY949544       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
EY896823       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTcc...
EV536487       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTAT--CTCTCAGATTCTcc....
EX771659       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCAGATTCTTAGAGA
FD938827       <-- TAATTGGTAGAAGTGATTTAGAGTCTGTATCCATCTCGGATTCTTAGAGA
EY935116       --> ..................................................
EV540923       --> ..................................................
EV573426       --> ..................................................
EY893284       --> ..................................................
EY945041       --> ..................................................
FD568113       --> ..................................................
FD968206       --> ..................................................
EV541014       --> ..................................................
EX907900       --> ..................................................

               1201   -   1251
UN23429        --> ATCC...........................
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY939115       <-- ...............................
FD972297       <-- ATCC...........................
FD564698       <-- ATCC...........................
EW733864       <-- ATCC...........................
EV568777       <-- ATgctgaaaacttttcgctttggtctattcc
EX758052       <-- ATCC...........................
FD569345       <-- ATgctgaaaacttttcgctttggtctcc...
EY949544       <-- ATCC...........................
EY896823       <-- ...............................
EV536487       <-- ...............................
EX771659       <-- ATgctgaaaacttttcgctttggtctactcc
FD938827       <-- ATCC...........................
EY935116       --> ...............................
EV540923       --> ...............................
EV573426       --> ...............................
EY893284       --> ...............................
EY945041       --> ...............................
FD568113       --> ...............................
FD968206       --> ...............................
EV541014       --> ...............................
EX907900       --> ...............................