Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN23445

               -2     -     48
UN23445        --> ...GGATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- ............ggAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EX769640       <-- .............ggGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EV542202       <-- .............ggggAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD573763       <-- ..................................................
FD961124       <-- ..................................................
EX768042       <-- ..................................................
FD935459       <-- ..................................................
FD961009       <-- ..................................................
FD961826       <-- ..................................................
FD553716       <-- ..................................................
EV567961       --> ...GGATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EV568204       --> ...GGATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EX764043       --> ...GGATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD569585       --> ...GGATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD965360       --> ...GGATGGGGAAAAGCAACAGATTAAGTGAGATCAAGAAAATTAACTAT
FD966320       --> ggaatATGGGGAAAAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD973312       --> ............ggAGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EX765929       --> .............ggGCAACAGATTAGGTGAGATCAAGAAAATTAACTAT
EV538117       --> .............ggggAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD939304       --> ...............ggAACAGATTAGGTGAGATCAAGAAAATTAACTAT
FD970261       --> .................gtgAGATTAGGTGAGATCAAGAAAATTAACTAT
FD965200       --> ..................................................
FD557653       --> ..................................................

               48     -     98
UN23445        --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- TCCGATTAGGCTTTCGATGAAGAGACTCACGACGCTGACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769640       <-- GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542202       <-- GCCGATTAGGCTTTCGATGAAGAGACTCACGACGCTGACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573763       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD961124       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX768042       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935459       <-- ..................................................  Raphanus sativus var. oleiformis
FD961009       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961826       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD553716       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV567961       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. landra
EV568204       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. landra
EX764043       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569585       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus sativus cv Early Scarlet Globe
FD965360       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. maritimus
FD966320       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. maritimus
FD973312       --> TCCGATTAGGCTTTCGATGAAGAGACTCACGACGCTGACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765929       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538117       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGCTGACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD939304       --> GCCGATTAGGCTTTCGATGAAGAGACTCACGACGGTTACCATTTCAAAAA  Raphanus sativus var. oleiformis
FD970261       --> GCCGATTAGGCTTTCGATTAAGAGACTCACGACGGTGACCATTTCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965200       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD557653       --> ..................................................  Raphanus raphanistrum subsp. landra

               98     -    148
UN23445        --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EX769640       <-- CTCATGGCGGAGATATTTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EV542202       <-- CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD573763       <-- ...............................CCGACACGCTACCACCCGG
FD961124       <-- ................................CGACACGCTACCACCCGG
EX768042       <-- .................................GACACGCTACCACCCGG
FD935459       <-- ..................................................
FD961009       <-- ..................................................
FD961826       <-- ..................................................
FD553716       <-- ..................................................
EV567961       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EV568204       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EX764043       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD569585       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD965360       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD966320       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD973312       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EX765929       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
EV538117       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD939304       --> CTCATGGCGGAGATATCTCCGGTTATGTCCTCCGACACGCTACCACCCGG
FD970261       --> CTCATGGTGGAGATATCTCCGGTTATGTCCTACGACACGCTACCACCCGG
FD965200       --> ..................................................
FD557653       --> ..................................................

               148    -    198
UN23445        --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- TTCGACCGCCTTTTCGCCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769640       <-- TTCGACCGCCTTTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542202       <-- TTCGACCGCCTTTTCGCCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573763       <-- TTCGACCGCCTCTTCACCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus sativus cv Early Scarlet Globe
FD961124       <-- TTCGACCGCCTTTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. maritimus
EX768042       <-- TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935459       <-- ..........TCTTCACCGCATTTAGACAAACAGAGAGCATGAGAGACCG  Raphanus sativus var. oleiformis
FD961009       <-- .........................................GAGAGACCG  Raphanus raphanistrum subsp. maritimus
FD961826       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD553716       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV567961       --> TTCGACCGCCTCTTCACCGCATTTGGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. landra
EV568204       --> TTCGACCGCCTCTTCACCGCATTTGGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. landra
EX764043       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569585       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus sativus cv Early Scarlet Globe
FD965360       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. maritimus
FD966320       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. maritimus
FD973312       --> TTCGACCGCCTCTTCGCCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765929       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACGGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538117       --> TTCGACCGCCTCTTCGCCGCATTTAGGCAAACAGAGAGCATGAGAGACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD939304       --> TTCGACCGCCTCTTCACCGCATTTAGACAAACAGAGAGCATGAGAGACCG  Raphanus sativus var. oleiformis
FD970261       --> TTCGACCGCCTCTTCACCGCATTTAGGCAAACAGAGAGCATGATAGACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965200       --> .........................................GAGAGACCG  Raphanus raphanistrum subsp. maritimus
FD557653       --> ..................................................  Raphanus raphanistrum subsp. landra

               198    -    248
UN23445        --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
EX769640       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
EV542202       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD573763       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD961124       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
EX768042       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD935459       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD961009       <-- TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD961826       <-- ..................................................
FD553716       <-- ..................................................
EV567961       --> TCACGACGATAGGTCCACAGCGAGTTACGTGAC-GATAAGGCAAAGGAAG
EV568204       --> TCACGACGATAGGTCCACAGCGAGTTACGTGAC-GATAAGGCAAAGGAAG
EX764043       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD569585       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD965360       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD966320       --> TCACGACGATAGGTCCACAGCGAGTTACGTGGCAGATAAGGCAAAGGAAG
FD973312       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
EX765929       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
EV538117       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD939304       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD970261       --> TCACGACGATAGGTCCGCAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD965200       --> TCACGACGATAGGTCCACAGCGAGTTACGTGACAGATAAGGCAAAGGAAG
FD557653       --> ..................................................

               248    -    298
UN23445        --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EX769640       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EV542202       <-- GGGTGAAGAAAGCGACCGAT--GTCTGTGAACGCAGGAGATAACATGAAG
FD573763       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGATATAACATGAAG
FD961124       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EX768042       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD935459       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCGGGAGATAACATGAAG
FD961009       <-- GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD961826       <-- .................................................G
FD553716       <-- ..................................................
EV567961       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EV568204       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EX764043       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD569585       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGATATAACATGAAG
FD965360       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD966320       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD973312       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EX765929       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
EV538117       --> GGGTGAAGAAAGCGACCGATG--TCTGTGAACGCAGGAGATAACATGAAG
FD939304       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCGGGAGATAACATGAAG
FD970261       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD965200       --> GGGTGAAGAAAGCGACCGATGCAGCTGTGAACGCAGGAGATAACATGAAG
FD557653       --> ..................................................

               298    -    348
UN23445        --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EX769640       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EV542202       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD573763       <-- GATGCGATGGACGGTGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD961124       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EX768042       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD935459       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAGGGAAACGGGTCAGAACAT
FD961009       <-- GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD961826       <-- GATGGGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD553716       <-- ...............................................gAT
EV567961       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EV568204       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EX764043       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD569585       --> GATGCGATGGACGGTGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD965360       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD966320       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD973312       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EX765929       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
EV538117       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD939304       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAGGGAAACGGGTCAGAACAT
FD970261       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD965200       --> GATGCGATGGACGGGGCCTGGAAAGCGGCTAAGGAAACGGGTCAGAACAT
FD557653       --> ..................................................

               348    -    398
UN23445        --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- CAGCGAAGCCGTTACGGGAGATGATGACAACGGCGACAGGATTCAAGAGG
EX769640       <-- CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
EV542202       <-- CAGCGAAGCCGTTACGGGAGATGATGACAACGGCGACAGGATTCAAGAGG
FD573763       <-- CAGGGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD961124       <-- CAGGGAAGCCGTTACGGGGGGTGATGACAACGGCGACAGGATTCAAGAGG
EX768042       <-- CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD935459       <-- CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAGGAGG
FD961009       <-- CAGGGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD961826       <-- CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD553716       <-- CAGCGAAGCCGTTGCGGGAGATGATGACAACGGCGACAGGATTCAAGAGG
EV567961       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
EV568204       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
EX764043       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD569585       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD965360       --> CAGCGAAGCCGTTACGGGGGGTGATGACAACGGCGACAGGATTCAAGAGG
FD966320       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD973312       --> CAGCGAAGCCGTTACGGGAGATGATGACAACGGCGACAGGATTCAAGAGG
EX765929       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
EV538117       --> CAGCGAAGCCGTTACGGGAGATGATGACAACGGCGACAGGATTCAAGAGG
FD939304       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAGGAGG
FD970261       --> CAGTGAAGCCGTTACGGGGGATGATGAAAACGGCGACAGGATTCAAGAGG
FD965200       --> CAGCGAAGCCGTTACGGGGGATGATGACAACGGCGACAGGATTCAAGAGG
FD557653       --> ..................................................

               398    -    448
UN23445        --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769640       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542202       <-- ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573763       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus sativus cv Early Scarlet Globe
FD961124       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
EX768042       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935459       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus sativus var. oleiformis
FD961009       <-- ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCATCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
FD961826       <-- ACAAGGTCGCGGTAGGGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
FD553716       <-- ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. landra
EV567961       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. landra
EV568204       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. landra
EX764043       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569585       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus sativus cv Early Scarlet Globe
FD965360       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
FD966320       --> ACAAGGTCGCGGTAGGGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
FD973312       --> ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765929       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538117       --> ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD939304       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus sativus var. oleiformis
FD970261       --> ACAAGGTCGCGGTCGAGCTGAAGGATGTGAGGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965200       --> ACAAGGTCGCGGTAGAGCTGAAGGATGTGAGGCATCCTGTTGACACCACG  Raphanus raphanistrum subsp. maritimus
FD557653       --> ..............................GGCAGCCTGTTGACACCACG  Raphanus raphanistrum subsp. landra

               448    -    498
UN23445        --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EX769640       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EV542202       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD573763       <-- GAGTATAGAGGTGTGGAGGATTTACATCATCAGCAAACCGACGGCGAGAA
FD961124       <-- GAGTATAGAGGTGTGGAGGATTTACATCATCAGCAAACCGACGGCGAGAA
EX768042       <-- GAGTATAGAGGTGTGGAGGATTTACATCATCAGCAAACCGACGGCGAGAA
FD935459       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD961009       <-- GAGTATAGAGGTGTGGAGGATTTACATCATCAGCAAACCGACGGCGAGAA
FD961826       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD553716       <-- GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EV567961       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EV568204       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EX764043       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD569585       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD965360       --> GAGTATAGAGGTGTGGAGGATCTA..........................
FD966320       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD973312       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EX765929       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
EV538117       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD939304       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD970261       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGCCGAGAA
FD965200       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA
FD557653       --> GAGTATAGAGGTGTGGAGGATCTACATCATCAGCAAACCGACGGCGAGAA

               498    -    548
UN23445        --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTGTTGTCTTCTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769640       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCT-----ATTGGT-TTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542202       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTGTTGTCTTCTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573763       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT  Raphanus sativus cv Early Scarlet Globe
FD961124       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTTTATTGT-TTTTT-TTTT  Raphanus raphanistrum subsp. maritimus
EX768042       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTA-----TTGTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935459       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT  Raphanus sativus var. oleiformis
FD961009       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTTTATTGT-TTTTT-TTTT  Raphanus raphanistrum subsp. maritimus
FD961826       <-- TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTAT----TGTTT-TTTT  Raphanus raphanistrum subsp. maritimus
FD553716       <-- TAAATCACCGTGAGAGAGTGCGTGAGGG-TGTCTATTGTCTTCTTCTTTT  Raphanus raphanistrum subsp. landra
EV567961       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTTTTTTT-TTTT  Raphanus raphanistrum subsp. landra
EV568204       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTTTTTTT-TTTT  Raphanus raphanistrum subsp. landra
EX764043       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGT-----T-TTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569585       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT  Raphanus sativus cv Early Scarlet Globe
FD965360       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966320       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATT.............  Raphanus raphanistrum subsp. maritimus
FD973312       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTGTTGTCTTCTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765929       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTG-----GT-TTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538117       --> TAAATCACCGTGAGAGAATGCGTGAGGGGTGTCTGTTGTCTTCTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD939304       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT  Raphanus sativus var. oleiformis
FD970261       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGTCTTCTT-TTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965200       --> TAAATCACCGTGAGAGAATGCGTGAGGG-TGTCTATTGT-TTTTT-TTTT  Raphanus raphanistrum subsp. maritimus
FD557653       --> TAAATCACCGTGAGAGAGTGCGTGAGGG-TGTCTATTGTCTTCTTCTTTT  Raphanus raphanistrum subsp. landra

               548    -    598
UN23445        --> TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- TTCT-TTT-CTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EX769640       <-- TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EV542202       <-- TTTTCTTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD573763       <-- TTTC-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD961124       <-- TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EX768042       <-- TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD935459       <-- TTTC-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD961009       <-- TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD961826       <-- TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD553716       <-- TTTTCTTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EV567961       --> TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EV568204       --> TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EX764043       --> TTTT-TTTTCTTATCGGTGTTGTTT-GTT.....................
FD569585       --> TTTC-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATG............
FD965360       --> ..................................................
FD966320       --> ..................................................
FD973312       --> TTCT-TTT-CTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EX765929       --> TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
EV538117       --> TTTTCTTTTCTTATCGTTGTTGTTTTGTTTCAATTATGAAGGAACCCGTT
FD939304       --> TTTC-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD970261       --> TCTT-TT--CTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD965200       --> TTTT-TTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT
FD557653       --> TTTTCTTTTCTTATCGTTGTTGTTT-GTTTCAATTATGAAGGAACCCGTT

               598    -    648
UN23445        --> ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- ACTAGATTTGATTACATTTTGTTCTTATCATTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX769640       <-- ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV542202       <-- ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573763       <-- ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus sativus cv Early Scarlet Globe
FD961124       <-- ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. maritimus
EX768042       <-- ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD935459       <-- ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus sativus var. oleiformis
FD961009       <-- ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. maritimus
FD961826       <-- ACTAGATTTGATTACGTTTTGTTCT.........................  Raphanus raphanistrum subsp. maritimus
FD553716       <-- ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. landra
EV567961       --> ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. landra
EV568204       --> ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. landra
EX764043       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569585       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD965360       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966320       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD973312       --> ACTAGATTTGATTACATTTTGTTCTTATCATTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765929       --> ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538117       --> ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD939304       --> ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus sativus var. oleiformis
FD970261       --> ACTAGGTTTGATTACATTTTGTTCTTATCAGTTAAAcggg..........  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965200       --> ACTAGATTTGATTACGTTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. maritimus
FD557653       --> ACTAGATTTGATTACATTTTGTTCTTATCAGTTAAAACGGGAAAATAACA  Raphanus raphanistrum subsp. landra

               648    -    698
UN23445        --> AATCGTTTTGAAGTTTTGGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~
FD969027       <-- AATCGTTTTGAAGTTTTGGGC.
EX769640       <-- AATCGTTTTGAAGTTTTGGac.
EV542202       <-- AATCGTTTTGAAGTTTTGGcc.
FD573763       <-- AATCGTTTTGAAGTTTTGGGC.
FD961124       <-- AATCGTTTTGAAGTTTTGGGC.
EX768042       <-- AATCGTTTTGAAGTTTTGGG..
FD935459       <-- AATCGTTTTGAAGTTTTGGac.
FD961009       <-- AATCGTTTTGAAGTTTTGGGC.
FD961826       <-- ......................
FD553716       <-- AATCGTTTTGAAGTTTTGGcc.
EV567961       --> AATCGTTTTGAAGTTTTGGGCC
EV568204       --> AATCGTTTTGAAGTTTTGG...
EX764043       --> ......................
FD569585       --> ......................
FD965360       --> ......................
FD966320       --> ......................
FD973312       --> AATCGTTTTGAAGTTTTGGGC.
EX765929       --> AATCGTTTTGAAGTTTTGGac.
EV538117       --> AATCGTTTTGAAGTTTTGGcc.
FD939304       --> AATCGTTTTGA...........
FD970261       --> ......................
FD965200       --> AATCGTTTTGAAGTTTTGGGC.
FD557653       --> AATCGTTTTGAAGTTTTGGcc.