Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN23452

               1      -     51
UN23452        --> ACTCTCGTACTCGACTGTGTCAACCATCTCCTAATAATCTCAATCTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> ACTCTCGTACTCGACTGTGTCAACCATCTCCTAATAATCTCAATCTCTCC
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> ..................................................

               51     -    101
UN23452        --> TTCCCAGGTTTCTCTCTCTCTCTAAATACCCTCTTTATCTGCTTTGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> TTCCCAGGTTTCTCTCTCTCTCTAAATACCCTCTTTATCTGCTTTGTCAT
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> ..................................................

               101    -    151
UN23452        --> CATGATCTTCGTTTGATCCTTGATTTCAATTCTCGGTAAAGTTCAATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CATGATCTTCGTTTGATCCTTGATTTCAATTCTCGGTAAAGTTCAATTGA
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> ..................................................

               151    -    201
UN23452        --> TCCGAAAAATAGGATCTCTTTGAAATTTCAGTATCGAGAAAACGCGCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> TCCGAAAAATAGGATCTCTTTGAAATTTCAGTATCGAGAAAACGCGCGAT
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> ..................................................

               201    -    251
UN23452        --> CCGCAGTATGAGTGACTCAATCGAAACCGGAGCAGAAACACAGGTGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CCGCAGTATGAGTGACTCAATCGAAACCGGAGCAGAAACACAGGTGGAAA
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> ..................................................

               251    -    301
UN23452        --> GGAGAAGCCTTTACCCTCCAATAGAGTCGTACAACGATGGGATTCTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> GGAGAAGCCTTTACCCTCCAATAGAGTCGTACAACGATGGGATTCTAAAG
EV529244       --> .....................gAGAGCCGTACAACGATGGGATTCTAAAG
FD534954       --> ..................................................
EY931273       --> ..................................................

               301    -    351
UN23452        --> GTTTCGGATACTCACACACTCTACTGGGAGCAATCAGGAAACCCAGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> GTTTCGGATACTCACACACTCTACTGGGAGCAATCAGGAAACCCAGGTGG
EV529244       --> GTTTCGGATACTCACACACTCTACTGGGAGCAATCAGGAAACCCAGATGG
FD534954       --> ..................................................
EY931273       --> ..................................................

               351    -    401
UN23452        --> CCACGCAGTTGTTTTTCTTCACGGAGGTCCAGGAGGAGGAACATCTCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CCACGCAGTTGTTTTTCTTCACGGAGGTCCAGGAGGAGGAACATCTCCTA
EV529244       --> CCACGCAGTTGTTTTTCTTCACGGAGGTCCAGAAGGAGGAACATCTCCTA
FD534954       --> ..................................................
EY931273       --> ..................................................

               401    -    451
UN23452        --> ATAACCGGAGATTCTTTGATCCTGTGTTTTATCGGATTGTTCTCTTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> ATAACCGGAGATTCTTTGATCCTGTGTTTTATCGGATTGTTCTCTTTGAC
EV529244       --> ATAACCGGAGATTCTTTGATCCTGTGTTTTATCGGATTGTTCTCTTTGAC
FD534954       --> ..................................................
EY931273       --> ..................................................

               451    -    501
UN23452        --> CAGAGAGGTGCAGGGAGGAGTACACCACATGCTTGCTTGGAGGAGAACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CAGAGAGGTGCAGGGAGGAGTACACCACATGCTTGCTTGGAGGAGAACAC
EV529244       --> CAGAGAGGTGCAGGGAAGAGTACACCACATGCTTGCTTGGAGGAGAACAC
FD534954       --> .....................gCACCACATGCTTGCTTGGAGGAGAACAC
EY931273       --> ..................................................

               501    -    551
UN23452        --> CACTTGGGACCTTGTTAATGATATTGAAAAACTAAGGCAACATTTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..................................................
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CACTTGGGACCTTGTTAATGATATTGAAAAACTAAGGCAACATTTAAAAA
EV529244       --> CACTTGGGATCTTGTCAATGATATTGAAAAACTAAGGGAACATTTGAAAA
FD534954       --> CACTTGGGACCTTGTTAATGATATTGAAAAACTAAGGCAACATTTAAAAA
EY931273       --> ..................................................

               551    -    601
UN23452        --> TTCCTGAATGGCTGGTTTTTGGTGGATCTTGGGGAAGCACTTTAGCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ...........................CTTGGGGAAGCACTTTAGCACTT
FD967977       <-- ..................................................
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> TTCCTGAATGGCTGGTTTTTGGTGGATCTTGGGGAAGCACTTTAGCACTT
EV529244       --> TTCCTGAATGGCTGGTTTTTGGGGGATCTTGGGGAAGCACTTTAGCACTT
FD534954       --> TTCCTGAATGGCTGGTTTTTGGTGGATCTTGGGGAAGCACTTTAGCACTT
EY931273       --> ..................................................

               601    -    651
UN23452        --> GCGTACAGCCAGTCCCACCCTGATAAGGTTACTGGTTTGGTCCTTAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GCGTACAGCCAGTCCCACCCTGATAAGGTTACTGGTTTGGTCCTTAGAGG
FD967977       <-- .......................TAAGGTTACTGGTTTGGTCCTTAGAGG
FD944493       <-- ..................................................
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> GCGTACAGCCAGTCCCACCCTGATAAGGTTACTGGTTTGGTCCTTAGAGG
EV529244       --> GCGTACAGCCAGTCCCACCCTGATAAGGTTACTGGTTTGGTCCTTAGAGG
FD534954       --> GCGTACAGCCAATCCCACCCTGATAAGGTTACTGGTATGGTCCTTAGAGG
EY931273       --> ..................................................

               651    -    701
UN23452        --> GATCTTTATGTTGCGAAAGAAGGAGATTGATTGGTTTTATGAGGGTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GATCTTTATGTTGCGAAAGAAGGAGATTAATTGGTTTTATGAGGGTGGTG
FD967977       <-- GATCTTTATGTTGCGAAAGAAGGAGATTGATTGGTTTTATGAGGGTGGTG
FD944493       <-- ...................................TTTATGAGGGTGGTG
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> GATCTTTATGTTGCGAAAGAAGGAGATTGATTGGTTTTACGAGGGTGGTG
EV529244       --> GATCTTTATGTTGCGAAAGAAGGAGATTAATTGGTTTTATGAGGGTGGTG
FD534954       --> GATCTTTATGTTGCGAAAGAAGGAGATTGATTGGTTTTATGAGGGTGGTG
EY931273       --> ..................................................

               701    -    751
UN23452        --> CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCATATTCCA
FD967977       <-- CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCTGATTCCA
FD944493       <-- CTGCTGCTATATATC-TGATGCTTGGGAGGAGTTCAGAGATCTTATTCCA
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCATATTCCA
EV529244       --> CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCATATTCCA
FD534954       --> CTGCTGCTATATATCCTGATGCTTGGGAGGAGTTCAGAGATCTTATTCCA
EY931273       --> ..................................................

               751    -    801
UN23452        --> GAAAACGAGAGAGGTAGCCTAGTGGATGCATATCACAAAAGACTGAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GAAAACGAGAGAGGTAACCTAGTGGATGCATATCACAAAAGACCGAACTC
FD967977       <-- GAAAACGAGAGAGGTAGCCTAGTGGATGCATATCACAAAAGACTGAACTC
FD944493       <-- GAAAACGAGAGAGGTAGCCTAGTGGATGCATATCACAAAAGACTCAACTC
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> GAAAACGAGAG.......................................
EV529244       --> GAAAACGAGAGAGGTAACCTAGTGGATGCATATCACAAAAGACCGAACTC
FD534954       --> GAAAACGAGAGAGGTAGCCTAGTGGATGCATATCACAAAAGACTGAACTC
EY931273       --> ..................................................

               801    -    851
UN23452        --> CGATAATCTGGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- CGATAATCTGGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG
FD967977       <-- CGATAATCAGGAAACTCAATATGCAGCTGCAAGAGCTTGGGCTAAATGGG
FD944493       <-- CGATAATCTGGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG
FD943242       <-- ..................................................
FD937021       <-- ..................................................
FD941370       --> ..................................................
EV529244       --> CGATAATCTGGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG
FD534954       --> CGATAATCTAGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG
EY931273       --> ......gCTGGAAACTCAATATGCAGCTGCAAGAGCTTGGACTAAATGGG

               851    -    901
UN23452        --> AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCC
FD967977       <-- AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCA
FD944493       <-- AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCA
FD943242       <-- ..................TTCTTCCAAATGATGGAAACATTCAAAAGGCA
FD937021       <-- ................................GGAAACATACAAAAGGCA
FD941370       --> ..................................................
EV529244       --> AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCC
FD534954       --> AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCA
EY931273       --> AAATGAGGACTGCTCATCTTCTTCCAAATGATGGAAACATTCAAAAGGCA

               901    -    951
UN23452        --> GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD967977       <-- GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD944493       <-- GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD943242       <-- GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD937021       <-- GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD941370       --> ..................................................
EV529244       --> GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
FD534954       --> GACGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT
EY931273       --> GAAGATGATAAGTTTTCATTGGCGTTTGCAAGGATTGAAAACCACTACTT

               951    -   1001
UN23452        --> TGTTAACAAGGCTTTCTTTACCTCGGACTCATACTTGCTGGAGAATATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- TGTTAACAAGGCTTTCTTTACCTCGGACTCATACTTGCTGGAGAATATTG
FD967977       <-- TGTTAACAAGGCTTTCTTTACCTCGGACTCATTCTTGCTGGAGAATATTG
FD944493       <-- TGTTAACAAGGCTTTCTTTACCTCGGACTCGTACTTGCTGGAAAATATTG
FD943242       <-- TGTTAACAAGGCTTCCTTTACCTCGGACTCATACTTGCTGGAAAATATTG
FD937021       <-- TGTTAACAAGGCTTTCTTTACCTCGGACTCATACTTGCTGGAGAATATTG
FD941370       --> ..................................................
EV529244       --> TGTTAACAAG-CTTTCTTTACCTCGGACTCATACTTG.............
FD534954       --> TGTTAACAAGGCTTTCTTTACCTCGGACTCATACTTGCTGGAGAATATCG
EY931273       --> TGTAAACAAGGCTTTCTTTACCTCGGACGCATACTTGCTGGAGAATATTG

               1001   -   1051
UN23452        --> ATAAAATAAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ATAAAATAAGACATATCAAGACCATCATTGTTCAGGGAAGGTATGACGTA
FD967977       <-- ATAAAATAAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
FD944493       <-- ATAAAATTAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
FD943242       <-- ATAAAATTAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
FD937021       <-- ATAAAATAAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> ATAAAATAAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA
EY931273       --> ATAAAATAAGACATATCAAGACCACCATTGTTCAGGGAAGGTATGACGTA

               1051   -   1101
UN23452        --> GTTTGTCCCATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GTTTGTCCCATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus raphanistrum subsp. maritimus
FD967977       <-- GTTTGTCCCATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944493       <-- GTTTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus sativus cv Early Scarlet Globe
FD943242       <-- GTTTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAAGC  Raphanus sativus cv Early Scarlet Globe
FD937021       <-- GTTTGCCCCATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus sativus var. oleiformis
FD941370       --> ..................................................  Raphanus sativus var. oleiformis
EV529244       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD534954       --> GTTTGTCCCATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus raphanistrum subsp. maritimus
EY931273       --> GTTTGTCCTATGATGTCTGCTTGGGATCTGCACAAAGCATGGCCAGAGGC  Raphanus sativus var. oleiformis

               1101   -   1151
UN23452        --> AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
FD967977       <-- AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
FD944493       <-- AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
FD943242       <-- AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
FD937021       <-- AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA
EY931273       --> AGACCTCAAGATTGTTGGTGATTGTGGACACTCGGCAAATGAGCCTGGAA

               1151   -   1201
UN23452        --> TAGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTTTTTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- TAGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTTTGTGGGA
FD967977       <-- TAGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTTTTTGGGA
FD944493       <-- TAGCAGCAGAACTAGTGGCTGCAAATGAAAAGATGAAAGCTTTTTTGGGA
FD943242       <-- TAGCAGCAGAACTAGTGGCTGCAAATGAAAAGATGAAAGCTTTTTTGGGA
FD937021       <-- TAGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTTTGTGGGA
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> TCGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTTTTTGGGA
EY931273       --> TCGCAGCAGAACTAGTGGTTGCAAATGAAAAGATGAAAGCTTCTTTGGGA

               1201   -   1251
UN23452        --> TGAAAATACTC-TATGGACTGCGTTCATATCTCAGGGACTTGTGTTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- TGAAAATACTC-TATGGACTGCGTTCATATCTCAGGGACTTGTGTTAATT
FD967977       <-- TGAAAATACTC-TATGGACTGCGTTCATATCTCAGGGACTTGTGTTAATT
FD944493       <-- TGAAAATACTC-AATGGACTGCGTTCATATCTCAGGGACTTGTGTTCATT
FD943242       <-- TGAAAATACTC-AATGGACTGCGTTCATATCTCAGGGACTTGTGTTCATT
FD937021       <-- TGAAAATACTC-GATGGACTGCGTTCATATATCAGGGACTTGTGTTCATT
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> TGAAAATACTC-TATGGACTGCGTTCATATCTC.................
EY931273       --> TGAAAATACTCAGATGGACTGCGTTCATATCTCAGGGACTTGTGTTAATT

               1251   -   1301
UN23452        --> T--TTTTTCAAGTTTGTTTCTGCAAAGTAAGATCACATTCACAGAC----
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- T--TTCTTCAAGTTTGTTTCTGCAAAGTAAGACCACATTCACAGACAGAC
FD967977       <-- T--TTCTTCAAGTTTGTTTCTGCAAAGTAAGATCGCATTCACAGAC----
FD944493       <-- TCTTTTTTCAAGTTTGTTTCTGCAAAGTAAGATCACATTCACAGAC----
FD943242       <-- TCTTTTTTCAAGTTTGTTTCTGCAAAGTAAGATCACATTCACAGAC----
FD937021       <-- TCTTTTTTCAAGTTTGTTTCTGCAAAGTAAGATCACATTCACAGAC----
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> T--TTCTTCAAGTTTGTTTCTGCAAAGTAAGATCACATTCACAGACAGAC

               1301   -   1351
UN23452        --> GTATAGTTTGTTTTCAACGTGAATCAAAGGTTATTGTCAAAAA-GAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- GTATAGTTTGTTTTCAACGTGAATCAAAGGTTATTGTCAAAAA-GAATAA
FD967977       <-- GTATAGTTTGTTTTCAACGTGAATCAAAGGTTATTGTCAAAggcaa....
FD944493       <-- GTATAGTTTGTTTTCAAGGTGAATCAAAGGTTATTGTCAAAAA-GAATAA
FD943242       <-- GTATAGTTTGTTTTCAAGGTGAATCAAAGGTTATTGTCAAAAA-GAATAA
FD937021       <-- GTATAGTTTGTTTTCAACGTGAATCAAATTCTATTGTCAAAAAAGAATAA
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> GTCTAGTTTGTTTTCAACGTGAATCAAAGGTTATTGTCAAAAAAGAATAA

               1351   -   1401
UN23452        --> TTTTGAATGCTGATACAGTACTTGCTCATTTTGTGTAAAGAGTCGAGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- TTTTGAATGCTGATACAGTACTTGttc.......................
FD967977       <-- ..................................................
FD944493       <-- TTTTGAATGCTGATACAGTACTTGCTCATTTTGTGTAAAGAGTCGAGTAA
FD943242       <-- TTTTGAATGCTGATACAGTACTTGCTCATTTTGTGTAAAGAGTCGAGTAA
FD937021       <-- TTTTGAATaccc......................................
FD941370       --> ..................................................
EV529244       --> ..................................................
FD534954       --> ..................................................
EY931273       --> TTTTGAATGCTGATACAGTACTTGttc.......................

               1401   -   1451
UN23452        --> TAGCAAACATGGAATGGGCATATGTAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV533040       <-- ..............................
FD967977       <-- ..............................
FD944493       <-- TAGCAAACATGGAATGGGCATATGTAATCC
FD943242       <-- TAGCAAACATGGAATGGGCATATGTAATCC
FD937021       <-- ..............................
FD941370       --> ..............................
EV529244       --> ..............................
FD534954       --> ..............................
EY931273       --> ..............................