RadishBase

| | | |
Alignment for radish unigene UN23480

               1      -     51
UN23480        --> GGGTCTTGGCCTCCTCGTCTTCTTCAGCAAAGTCTCTCTTGCACCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> GGGTCTTGGCCTCCTCGTCTTCTTCAGCAAAGTCTCTCTTGCATCTCCAA
EX773824       --> GGGTCTTGGCCTCCTCGTCTTCTTCAGCAAAGTCTCTCTTGCATCTCCAA
EY897230       --> GGGTCTTGGCCTCCTCGTCTTCTTCAGCAAAGTCTCTCTTACACCTCCAA
HS106925       --> ..........gcacgaggCTTCTTCAGCAAAGTCTCTCTTGCACCTCCAA
FD962803       --> .......................ggAGCAAAGTCTCTCTTACACCTCCAA
FD972907       --> .......................ggAGCAAAGTCTCTCTTGCACCTCCAA
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               51     -    101
UN23480        --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
EX773824       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
EY897230       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
HS106925       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
FD962803       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
FD972907       --> AAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATCAA
FY437811       --> .......aCATGTCTGCTTTTGTCGGCAA-TACGCAGATGAGCTGATCAA
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               101    -    151
UN23480        --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> GGCTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
EX773824       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
EY897230       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
HS106925       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
FD962803       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAAATG
FD972907       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
FY437811       --> GACTGCCAAGTACATTGCAACACCGGGAAAGGGGATTTTGGCGGCAGATG
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               151    -    201
UN23480        --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCATCATCAATGTTGAGAAC
EX773824       --> AGAGCATTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
EY897230       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
HS106925       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
FD962803       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
FD972907       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
FY437811       --> AGAGCACTGGAACCATTGGGAAACGTTTCTCCAGCATCAATGTTGAGAAC
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               201    -    251
UN23480        --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
EX773824       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
EY897230       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
HS106925       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTTTTCACTTCCCCAGG
FD962803       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
FD972907       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTCTTCACTTCCCCAGG
FY437811       --> ATTGAGTCCAACCGCCAAGCTCTCCGTGAGCTCCTTTTCACTTCCCCAGG
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               251    -    301
UN23480        --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
EX773824       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
EY897230       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
HS106925       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
FD962803       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
FD972907       --> CGCTCTCCCTTGCCTCTCTGGCGTTATCCTCTTCGAGGAAACCCTCTACC
FY437811       --> CGCTCTCCCTTGCCTCTCCGGCGTTATCCTCTTCGAGGAAACCCTCTACC
EY941361       --> .....................gGTTATCCTCTTCGAGGAAACCCTCTACC
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               301    -    351
UN23480        --> AGAAAACTTCTGATGGCAAGCCCTTTGTCGAGTTCCTCCAGGAGAACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD952660       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> AGAAAACTTCTGATGGCAAGCCCTTTGTCGAGTTCCTCCAGGAGAACGGA  Raphanus raphanistrum subsp. landra
EX773824       --> AGAAAACTTCTGATGGCAAGCCCTTTGTCGAGTTCCTCCAGGAGAACGGA  Raphanus raphanistrum subsp. landra
EY897230       --> AGAAAACTTCCGATGGCAAGCCCTTCGTCGAGTTCCTCCAGGAGAACGGA  Raphanus raphanistrum subsp. maritimus
HS106925       --> AGAAAACTTCTGATGGCAAGCCCTTTGTCGAGTTCCTCCAGGAGAACGGA  Raphanus sativus var. niger
FD962803       --> AGAAAACTTCCGATGGCAAGCCCTTCGTCGAGTTCCTCCAGGAGAACGGA  Raphanus raphanistrum subsp. maritimus
FD972907       --> AGAAAACTTCTGATGGCAAGCTCTTTGTCGATTTCCTCCAGGAGAACGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> AGAAAACTTCTGATGGCAAGCCCTTTGTCGAGTTCCTCCAGGAGAACGGA  Raphanus sativus cv GSK3-1
EY941361       --> AGAAAACTTCTGATGGCAAGCCCTTCGTCGAGTTCCTCCAGGAGAACGGA  Raphanus sativus cv Early Scarlet Globe
FD570408       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN23480        --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
EX773824       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
EY897230       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCGGGGAC
HS106925       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
FD962803       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCGGGGAC
FD972907       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
FY437811       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
EY941361       --> GTTATCCCCGGAATCAAAGTGGACAAGGGTGTTGTTGATCTAGCAGGGAC
FD570408       --> ...................gGGACAAGGGTGTTGTTGATCTAGCAGGGAC
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               401    -    451
UN23480        --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
EX773824       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
EY897230       --> CAACGGTGAGACCACTACTCAGGGTCTTGACTCGCTTGGTGCACGTTGCC
HS106925       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
FD962803       --> CAACGGTGAGACCACTACTCAGGGTCTTGACTCGCTTGGTGCACGTTGCC
FD972907       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
FY437811       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
EY941361       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
FD570408       --> CAATGGTGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGTTGCC
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               451    -    501
UN23480        --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD952660       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> AGGAGTATTACAAGGCAGGAGCTCGATTTGCCAAATGGCGTGCAGTCCTC  Raphanus raphanistrum subsp. landra
EX773824       --> AGGAGTATTACAAGGCAGGAGCTCGATTTGCCAAATGGCGTGCAGTCCTC  Raphanus raphanistrum subsp. landra
EY897230       --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC  Raphanus raphanistrum subsp. maritimus
HS106925       --> AGGAGTATTACAAGGCAGGAGCTCGATTTGCCAAATGGCGTGCAGTCCTC  Raphanus sativus var. niger
FD962803       --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC  Raphanus raphanistrum subsp. maritimus
FD972907       --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> AGGAGTATTACAAGGCAGGAGCTCGATTTGCCAAATGGCGTGCAGTCCTC  Raphanus sativus cv GSK3-1
EY941361       --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC  Raphanus sativus cv Early Scarlet Globe
FD570408       --> AGGAGTATTACAAGGCAGGAGCTCGGTTTGCCAAATGGCGTGCAGTCCTC  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ..................................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN23480        --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..GATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> AAGATTGGGGCCAC....................................
EX773824       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
EY897230       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
HS106925       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
FD962803       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
FD972907       --> AAGATTGGAGCCACCGAGCCGAGCGAGCTCTCCATCCAAGAGAACGCCAA
FY437811       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
EY941361       --> AAGATTGGGGCCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
FD570408       --> AAGATTGGG-CCACCGAGCCGAGCGAGCTCTCGATCCAAGAGAACGCCAA
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               551    -    601
UN23480        --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> ..................................................
EX773824       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTGGTTCCAA
EY897230       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
HS106925       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTGGTTCCAA
FD962803       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
FD972907       --> AGGGCTA...........................................
FY437811       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTGGTTCCAA
EY941361       --> AGGGCTAGCTCGCCATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
FD570408       --> AGGGCTAGCTCGCTATGCCATCATCTGCCAGGAGAACGGACTAGTCCCAA
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               601    -    651
UN23480        --> TCGTCGAGCCAGAGGTTCTGACTGACGGGAGCCACGACATCAAGAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- TCGTCGAGCCAGAGGTTCTGACTGACGGGAGCCATGACATCAAGAAATGT  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD952660       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> TCGTCGAGCCAGAGGTTCTAACTGACGGGAGCCACGACATCAAGAAATGT  Raphanus raphanistrum subsp. landra
EY897230       --> TCGTCGAGCCAGAG-TTCTGACTGACGGGAGCCATGACATCAAGAAATGT  Raphanus raphanistrum subsp. maritimus
HS106925       --> TCGTCGAGCCAGAGGTTCTAACTGACGGGAGCCACGACATCAAGAAATGT  Raphanus sativus var. niger
FD962803       --> TCGTCGAGCCAGAGGTTCTGACTGACGGGAGCCATGACATCAAGAAATGT  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> TCGTCGAGCCAGAGGTTCTAACTGACGGGAGCCACGACATCAAGAAATGT  Raphanus sativus cv GSK3-1
EY941361       --> TCGTCGAGCCAGAGGTTCTGACTGATGAGAGCCACGACATCAAGAAATGT  Raphanus sativus cv Early Scarlet Globe
FD570408       --> TCGTCGAGCCAGAGGTTCTGACTGATGGGAGCCACGACATCAAGAAATGT  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN23480        --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAGGCCTTGAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAGGCCTTGAATGA  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ...........................GCCGTGTACAAAGCCTTGAACGA  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ............................CCGTGTACAAAGCCTTGAACGA  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD952660       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAG-CCTTGAACGA  Raphanus raphanistrum subsp. landra
EY897230       --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAG-CCTTGAATGA  Raphanus raphanistrum subsp. maritimus
HS106925       --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAGGCCTTGAACGA  Raphanus sativus var. niger
FD962803       --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTG.................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> GCGGCTGTGACTGAGACAGTTCTTTCTGCCGTGTACAAGGCCTTGAACGA  Raphanus sativus cv GSK3-1
EY941361       --> GCAGCTGTGACTGAGACAGTTCTCTCTGCCGTGTACAAAGCCTTGAACGA  Raphanus sativus cv Early Scarlet Globe
FD570408       --> GCAGCTGTGACTGAGACAGTTCTCTCTGCCGTGTACAAAGCCTTGAACGA  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ..................................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN23480        --> CCACCACGTCCTCCTCGAAGGCACTCTGCTGAAACCTAACATGGTCACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- CCACCACGTCCTCCTCGAAGGCACTCTGCTGAAACCTAACATGGTCACTC
FD574415       <-- CCACCACGTCCTCCTCGAAGGCACTCTGCTTAAACCTAACATGGTCACTC
EY936960       <-- CCACCACGTCCTCCTCGAAGGCACTCTGCCTAAACCTAACATGGTCACTC
FD975300       <-- ..........................................GGTCACTC
EV546497       <-- ..............................................gCTC
EY893609       <-- ..................................................
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> ..................................................
EX773824       --> CCACCACGTCCTCCTCGAAG-CACTCTGCTGAAAC-TAACATGGTCACTC
EY897230       --> CCACCACGTCCTCCTC..................................
HS106925       --> CCACCACGTCCTCCTCGAAGGCACTCTGCTGAAACCTAACATGGTCACTC
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> CCACCACGTCCTCCTCGAAGGCACTCTGCTGAAACCTAACATGGTCACTC
EY941361       --> CCACCACGTCCTCCTCGAAGGCACTCTGCCTAAACCTAACATGGTCACTC
FD570408       --> CCACCACGTCCTCCTCGAAGGCACTCTGCTTAAACCTAACATGGTCACTC
FD956864       --> ..........................................GGTCACTC
FD979215       --> ..........................................GGTCACTC
EV551398       --> ..............................................gCTC
FD558197       --> ..................................................

               751    -    801
UN23480        --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- CCGGCTCAGACAGTGCCAAGGTTGCACCCGAAGTGATAGCAGAGTACACA  Raphanus raphanistrum subsp. maritimus
FD574415       <-- CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- CCGGCTCAGACAGCGCCAAGGTTGCACCCGAAGTGATAGCA--GTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ........GACAGTGCCAAGGTTGCACCCGAAGTGATAGCAGAGTACACA  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD952660       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> CCGGCTCAGACAGCGCCA--GTTGCACCGGA-GTGATAGCAGAGTACACA  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv GSK3-1
EY941361       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv Early Scarlet Globe
FD570408       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv Early Scarlet Globe
FD956864       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> CCGGCTCAGACAGCGCCAAGGTTGCACCGGAAGTGATAGCAGAGTACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> CCGGCTCAGACAGCGCCAAGGTTGCACCCGAAGTGATAGCAG--TACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ..................................................  Raphanus raphanistrum subsp. landra

               801    -    851
UN23480        --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD574415       <-- GTGACTGCTTTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EY936960       <-- GTGACTGCTTTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD975300       <-- GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EV546497       <-- GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EY893609       <-- GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD554144       <-- ...gCTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD952660       <-- ......GCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EV567688       --> ..................................................
EX773824       --> GTGACTGCTCTCgcg...................................
EY897230       --> ..................................................
HS106925       --> GTGACTGCTCTCCGCCGCAC..............................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EY941361       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD570408       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD956864       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD979215       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
EV551398       --> GTGACTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT
FD558197       --> ...gCTGCTCTCCGCCGCACGGTCCCACCAGCGGTTCCTGGAATCGTGTT

               851    -    901
UN23480        --> CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCTAAATCTGAA-CGCA
FD574415       <-- CCTATCAGGAGGACAAAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
EY936960       <-- CCTATCAGGAGGACAAAGCGAAGAGGAAGCAACGCAAAATTTGAA-CGCA
FD975300       <-- CCTCTCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
EV546497       <-- CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
EY893609       <-- CCTATCAGGAAGACAGAGCGAAGAGGAAGCAACGCTAAATCTGAA-CGCA
FD554144       <-- CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
FD952660       <-- CCTCTCAGGAGGACATGGCGAAGAGGAAGCAACGCAAAATTTGAA-CGCA
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> CCTCTCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAAACGC-
EY941361       --> CCTA..............................................
FD570408       --> CCTATCAGGAGGACAAAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
FD956864       --> CCTCTCAGGAGGACATGGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
FD979215       --> CCTCTCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
EV551398       --> CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA
FD558197       --> CCTATCAGGAGGACAGAGCGAAGAGGAAGCAACGCAAAATCTGAA-CGCA

               901    -    951
UN23480        --> ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ATGAACAAGCTCGATTTGCTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ATGAACAAGCTCGATTTGCTGAAGCCATGGACGCTCACTTTTTCCTTTGG  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ATGAACAAGCTCGAATTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ATGAACAAGCTCGATTTGCTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. landra
FD952660       <-- ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> ..................................................  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> ATGAACAAGCTCG.....................................  Raphanus sativus cv GSK3-1
EY941361       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570408       --> ATGAACAAGCTCGATTTGCTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ATGAACAAGCTCGATTTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ATGAACAAGCTCGAATTGTTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ATGAACAAGCTCGATTTGCTGAAGCCATGGACGCTCACTTTCTCCTTTGG  Raphanus raphanistrum subsp. landra

               951    -   1001
UN23480        --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGCGGTAAGAAATAGA  Raphanus raphanistrum subsp. maritimus
FD574415       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGCGGTAAGAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGCGGTAAGAAAGAGA  Raphanus raphanistrum subsp. maritimus
FD554144       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus raphanistrum subsp. landra
FD952660       <-- CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> ..................................................  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> ..................................................  Raphanus sativus cv GSK3-1
EY941361       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570408       --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus sativus cv Early Scarlet Globe
FD956864       --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGCGGTAAGAGAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> CCGAGCCCTCCAGCAAAGCACTCTCAAGGCTTGGGGAGGTAAGAAAGAGA  Raphanus raphanistrum subsp. landra

               1001   -   1051
UN23480        --> ACGTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ACGTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus raphanistrum subsp. maritimus
FD574415       <-- ACGTAGACAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCG  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- ACGTAGACAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCG  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- ACGTATCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- ACTTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- ACGTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAATTCT  Raphanus raphanistrum subsp. maritimus
FD554144       <-- ACGTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus raphanistrum subsp. landra
FD952660       <-- ACGTATCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> ..................................................  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> ..................................................  Raphanus sativus cv GSK3-1
EY941361       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570408       --> ACGTAGACAAAGCT....................................  Raphanus sativus cv Early Scarlet Globe
FD956864       --> ACGTATCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> ACGTATCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> ACTTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> ACGTAGCCAAAGCTCAGGCCACGTTCTTGGTCAGGTGCAAGGCTAACTCT  Raphanus raphanistrum subsp. landra

               1051   -   1101
UN23480        --> GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
FD574415       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
EY936960       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTTTGCTGC
FD975300       <-- GACGCCACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
EV546497       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
EY893609       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
FD554144       <-- GACGCTACACTTGGGAAATGCATCCCCGGGGCTTCTGGTGACTCTGCTGC
FD952660       <-- GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
FD979215       --> GACGCCACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
EV551398       --> GACGCTACACTTGGGAAATACATCCCCGGGGCTTCTGGTGACTCTGCTGC
FD558197       --> GACGCTACACTTGGGAAATGCATCCCCGGGGCTTCTGGTGACTCTGCTGC

               1101   -   1151
UN23480        --> CTCGGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTTCGTTT  Raphanus raphanistrum subsp. maritimus
FD574415       <-- CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTTTGCGTTT  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- CTCGGAGAGCTTGTTTGTGAAAGGATACGGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- CTCGGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. maritimus
FD554144       <-- CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. landra
FD952660       <-- CTCGGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> ..................................................  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> ..................................................  Raphanus sativus cv GSK3-1
EY941361       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570408       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956864       --> CTCGGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> CTCGGAGAGCTTGTTTGTGAAAGGATACGGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> CTCGGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> CTCCGAGAGCTTGTTTGTGAAAGGATACAGTTACTAGGGCGTCTGCGTTT  Raphanus raphanistrum subsp. landra

               1151   -   1201
UN23480        --> GATACGGTTTGGGTATATCTTATAATATATATGAATGTTTTGTTGGCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GATACGGTTTGGGTATATCTTATAATATATATGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. maritimus
FD574415       <-- GATACGGTTTGGGTATATCTTATAATATA--TGAATGTTTTGTTGGCGTT  Raphanus sativus cv Early Scarlet Globe
EY936960       <-- GATACGGTTTGGGTATATCTTATAATATA--TGAATGTTTTGTTGGCGTT  Raphanus sativus cv Early Scarlet Globe
FD975300       <-- GATACGGTTTGGGTATATCTTATAATATA--TGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV546497       <-- GATACGGTTTGGGTATATCTTATAATATATATGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY893609       <-- GATACGGTTTGGGTATATCTTATAATATATATGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. maritimus
FD554144       <-- GATACGGTTTGGGTATATCTTATAATATA--TGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. landra
FD952660       <-- GATACGGTTTGGGTATATCTTATAATATA--TGAATGTTTTGTTGACGTT  Raphanus sativus cv Rat-Tail Radish #3870
EV567688       --> ..................................................  Raphanus raphanistrum subsp. landra
EX773824       --> ..................................................  Raphanus raphanistrum subsp. landra
EY897230       --> ..................................................  Raphanus raphanistrum subsp. maritimus
HS106925       --> ..................................................  Raphanus sativus var. niger
FD962803       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD972907       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY437811       --> ..................................................  Raphanus sativus cv GSK3-1
EY941361       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD570408       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD956864       --> GATACGGTTTGGGTATATCTTATAATATAT--GAATGTTTTGTTGACGTT  Raphanus sativus cv Rat-Tail Radish #3870
FD979215       --> GATACGGTTTGGGTATATCTTATAATATAT--GAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV551398       --> GATACGGTTTGGGTATATCTTATAATATATATGAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD558197       --> GATACGGTTTGGGTATATCTTATAATATAT--GAATGTTTTGTTGGCGTT  Raphanus raphanistrum subsp. landra

               1201   -   1251
UN23480        --> GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
FD574415       <-- GTAACTGTCTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
EY936960       <-- GTAACTGTTTTAAA....................................
FD975300       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
EV546497       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
EY893609       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
FD554144       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
FD952660       <-- GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
FD979215       --> GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
EV551398       --> GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC
FD558197       --> GTAACTGTTTTAAATGTCTGCTCGATTTGGTTTTGCCGTTTGACCAAACC

               1251   -   1301
UN23480        --> GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCc..................
FD574415       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTatccc.........
EY936960       <-- ..................................................
FD975300       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
EV546497       <-- GTATAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
EY893609       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
FD554144       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
FD952660       <-- GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTg.................
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTg.................
FD979215       --> GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
EV551398       --> GTATAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT
FD558197       --> GTGTAGTGTGTCTTAAGCTATGTCTATTCTCTATTTCTCTCCCTCTTTGT

               1301   -   1351
UN23480        --> CAACGGCTATTGTGATGGATTTTTTTAATGTTATTTTTGGCGCCAACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- CAACGGCTATTGTGATGGATTTTTTTAATGTTATTTTTGGCGCC......
EV546497       <-- CA--AGCTATTGTGCTGGATTTTTATAATGTTATTTTTGGCGC.......
EY893609       <-- CA--AGCTATTGTGATGGATTTTTT-AATGTTATTTTTGGCGCCAACACA
FD554144       <-- CAACGGCTATTGTGATGGATTTTTTTAATGTTATTTTTGGCGCC......
FD952660       <-- ..................................................
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> CAACGGCTATTGTGATGGATTTTTTTAATGTTATTTTTGGCGCC......
EV551398       --> CAA--GCTATTGTGCTGGATTTTTATAATGTTATTTTTGGCGC.......
FD558197       --> CAACGGCTATTGTGATGGATTTTTTTAATGTTATTTTTGGCGCC......

               1351   -   1401
UN23480        --> TAACTGTTTGGTTCAAAAGTTCGGTAATATTTTAACAGTGGGTCCCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD959273       <-- ..................................................
FD574415       <-- ..................................................
EY936960       <-- ..................................................
FD975300       <-- ..................................................
EV546497       <-- ..................................................
EY893609       <-- TAACTGTTTGGTTCAAAAGTTCGGTAATATTTTAACAGTGGGTCCCACAC
FD554144       <-- ..................................................
FD952660       <-- ..................................................
EV567688       --> ..................................................
EX773824       --> ..................................................
EY897230       --> ..................................................
HS106925       --> ..................................................
FD962803       --> ..................................................
FD972907       --> ..................................................
FY437811       --> ..................................................
EY941361       --> ..................................................
FD570408       --> ..................................................
FD956864       --> ..................................................
FD979215       --> ..................................................
EV551398       --> ..................................................
FD558197       --> ..................................................

               1401   -   1451
UN23480        --> TGGAGCC
                   ~~~~~~~
FD959273       <-- .......
FD574415       <-- .......
EY936960       <-- .......
FD975300       <-- .......
EV546497       <-- .......
EY893609       <-- TGGAGCC
FD554144       <-- .......
FD952660       <-- .......
EV567688       --> .......
EX773824       --> .......
EY897230       --> .......
HS106925       --> .......
FD962803       --> .......
FD972907       --> .......
FY437811       --> .......
EY941361       --> .......
FD570408       --> .......
FD956864       --> .......
FD979215       --> .......
EV551398       --> .......
FD558197       --> .......