1      -     51
UN23505        --> GGACTTAAAAACTGCAAAACCCTCCGCCGCTTGCATCTCTCCCCCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- ...............................TGCATCTCTCCCCCTCCTC
EX758473       <-- ..................................................
EX773140       --> GGACTTAAAAACTGCAAAACCCTCCGCCGCTTGCATCTCTCCCCCTCCTC
FD966087       --> GGACTTAAAAACTGCAAAACCCTCCGCCGCTTGCATCTCTCCCCCTCCTC
EX754068       --> ............................................ggCCTC
FD548939       --> ..................................................

               51     -    101
UN23505        --> TCACTCTTACTTATCTTCTTCTTCTTATACCCAACGTAGGAAGAAGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- TCACTCTTACTTATCT-CTTCTTCTTATACCCAACGTAGGAAGAAGAACC  Raphanus raphanistrum subsp. landra
EX758473       <-- ..........TTATCTTCTGCTTCTTATACCCAACCTAGGAAGAAGAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773140       --> TCACTCTTACTTATCT-CTTCTTCTTATACCCAACGTAGGAAGAAGAACC  Raphanus raphanistrum subsp. landra
FD966087       --> TCACTCTTACTTATCT-CTTCTTCTTATACCCAACGTAGGAAGAAGAACC  Raphanus raphanistrum subsp. maritimus
EX754068       --> TCACTCTTACTTATCTTCTGCTTCTTATACCCAACCTAGGAAGAAGAACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548939       --> .......aggatcTCTTCTTCTTCTTATACCCAACGTGGGAAGAAGAACC  Raphanus raphanistrum subsp. raphanistrum (NY)

               101    -    151
UN23505        --> CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA
EX758473       <-- CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA
EX773140       --> CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA
FD966087       --> CTAAAAATCGAATAACAAGATGAATAGGGAGAAGTTGATGAAGATGGCTA
EX754068       --> CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA
FD548939       --> CTAAAAATCGAATAACAAGATGAATAGAGAGAAGTTGATGAAGATGGCTA

               151    -    201
UN23505        --> ACACTGTCCGCACTGGCGGTAAAGGAACTGTAAGAAGGAAGAAGAAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- ACACTGTCCGCACTGGCGGTAAAGGAACTGTAAGAAGGAAGAAGAAGGCT
EX758473       <-- ACACTGTCCGCACTGGCGGTAAAGGAACAGTAAGAAGGAAGAAGAAGGCT
EX773140       --> ACACTGTCCGCACTGGCGGTAAAGGAACTGTAAGAAGGAAGAAGAAGGCT
FD966087       --> ACACTGTCCGCACTGGCGGTAAAGGGACTGTAAGAAGGAAGAAGAAGGCT
EX754068       --> ACACTGTCCGCACTGGCGGTAAAGGAACAGTAAGAAGGAAGAAGAAGGCT
FD548939       --> ACACTGTCCGCACTGGCGGTAAAGGGACTGTAAGAAGGAAGAAGAAGGCT

               201    -    251
UN23505        --> GTTCACAAGACAAACACGACGGACGACAAGAAGCTACAGAGCACTCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- GTTCACAAGACAAACACGACCGACGACAAGAAGCTACAGAGCACTCTCAA  Raphanus raphanistrum subsp. landra
EX758473       <-- GTTCACAAGACAAACACGACGGACGACAAGAAGCTACAGAGCACTCTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773140       --> GTTCACAAGACAAACACGACCGACGACAAGAAGCTACAGAGCACTCTCAA  Raphanus raphanistrum subsp. landra
FD966087       --> GTTCACAAGACGAACACGACCGACGACAAGAAGCTACAGAGCACCCTCAA  Raphanus raphanistrum subsp. maritimus
EX754068       --> GTTCACAAGACAAACACGACGGACGACAAGAAGCTACAGAGCACTCTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548939       --> GTTCACAAGACAAACACGACGGACGACAAGAAGCTACAGAGCACTCTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN23505        --> GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
EX758473       <-- GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
EX773140       --> GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
FD966087       --> GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
EX754068       --> GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA
FD548939       --> GAGAGTTGGAGTCAACTCCATTCCCGGTATCGAAGAAGTTAACATCTTTA

               301    -    351
UN23505        --> AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCTTCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCTTCGGTT  Raphanus raphanistrum subsp. landra
EX758473       <-- AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCATCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773140       --> AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCTTCGGTT  Raphanus raphanistrum subsp. landra
FD966087       --> AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCTTCGGTT  Raphanus raphanistrum subsp. maritimus
EX754068       --> AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCATCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548939       --> AGGATGATTCTGTGATTCAGTTCCTTAACCCTAAAGTTCAAGCTTCCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN23505        --> GCTGCTAACACATGGGCTGTGAGCGGTACACCACAGACCAAAAAGTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- GCTGCTAACACATGGGCCGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. landra
EX758473       <-- GCTGCTAACACATGGGCTGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX773140       --> GCTGCTAACACATGGGCCGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. landra
FD966087       --> GCTGCTAACACATGGGCCGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. maritimus
EX754068       --> GCTGCTAACACATGGGCTGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548939       --> GCTGCTAACACATGGGCTGTGAGCGGTACACCACAGACCAAAAAGTTGCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN23505        --> AGACATACTTCCACAGATTATCAGCCAACTTGGAACTGATAACTTGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- AGACATACTTCCACAGATTATCAGCCAACTTGGAACTGATAACTTGGACA
EX758473       <-- AGACATACTTCCTCAGATTATCAG---CCTTGGAACTGATAACTTGGACA
EX773140       --> AGACATACTTCCACAGATTATCAGCCAACTTGGAACTGATAACTTGGACA
FD966087       --> AGACATACTTCCACAGATTATCAGCCAACTTGGAACTGATAACTTGGACA
EX754068       --> AGACATACTTCCTCAGATTATCAGCC---TTGGAACTGATAACTTGGACA
FD548939       --> AGACATACTTCCACAGATTATCAGCCAACTTGGAACTGATAACTTGGACA

               451    -    501
UN23505        --> ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
EX758473       <-- ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
EX773140       --> ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
FD966087       --> ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
EX754068       --> ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA
FD548939       --> ACCTAAAGAAGCTAGCAGAGCAGTTCCAGAAACAGGCACCAGGTGGAGGA

               501    -    551
UN23505        --> GCTGATGTTCCAGCGACTATCCAAGAAGAGGACGACGATGATGATGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- GCTGATGTTCCAGCGACTATCCAAGAAGAGGACGACGATGATGATGATGT
EX758473       <-- GCTGATGTTCCAGCGACTATCCAAGAAGAGGACAACGATGATGATGATGT
EX773140       --> GCTGATGTTCCAGCGACTATCCAAGAAGAGGACGACGATGATGATGATGT
FD966087       --> GCTGATGTTCCAGCGACTATCCAAGAAGAGGACGACGATGATGATGATGT
EX754068       --> GCTGATGTTCCAGCGACTATCCAAGAAGAGGACAACGATGATGATGATGT
FD548939       --> GCTGATGTTCCAGCGACTATCCAAGAAGAGGACGACGATGATGATGAT..

               551    -    601
UN23505        --> CCCAGAACTTGTAGCGGGAGAGACTTTCGAGACTCCTGCTGCTAAAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- CCCAGAACTTGTAGCGGGAGAGACTTTCGAGACTCCTGCTGCTAAAGCTA
EX758473       <-- CCCAGAACTTGTAGCGGGAGAGACTTTCGAGACTCCTGCTGCTAAAGCTA
EX773140       --> CCCAGAACTTGTAGCGGGAGAGACTTTCGAGACTCCTGCTGCTAAAGCTA
FD966087       --> CCCAGAACTTGTAGCGGGAGAGAC..........................
EX754068       --> CCCAGAACTTGTAGCGGGAGAGACTTTCGAGACTCCTGCTGCTAAAGCTA
FD548939       --> ..................................................

               601    -    651
UN23505        --> CTGCCTCCTAAGTGAAGGAGGCTCACCAGCAAAACCCCTCACCATAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- CTGCCTCCTAAGTGAAGAAGGCTCACCAGCAAAACCCCTCACCATAAAAA
EX758473       <-- CTGCCTCCTAAGTGAAGGAGGCTCACCAGCAAAACCCCTCACCATAAAAA
EX773140       --> CTGCCTCCTAAGTGAAGAAAGCTCACCAGCAAAACCCCTCACCATAAAAA
FD966087       --> ..................................................
EX754068       --> CTGCCTCCTAAGTGAAGGAGGCTCACCAGCAAAACCCCTCACCATAAAAA
FD548939       --> ..................................................

               651    -    701
UN23505        --> AAAATGTTTGGTGCTCGACCTTTTTTGAGCACCGTTCAGATTCTTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- AAAATGTTTGGTGCTCGACCTTTTTTGAGCACCGTTCAGATTCTTGTTTT
EX758473       <-- AAAATGTTTGGTGCTCGACCTTTTTTGAGCCCCGTTCAGATTCTTGTTTT
EX773140       --> AAA-TGTTTGGTGCTCGACCTTTTT-GAGCACCGTTCAGATTCTTGTTTT
FD966087       --> ..................................................
EX754068       --> AAAATGTTTGGTGCTCGACCTTTTTTGAGCACCGTTCAGATTCTTGTTTT
FD548939       --> ..................................................

               701    -    751
UN23505        --> CTCTAGTCGTTACGAACAGAAA--GACTTGGTTTTGTTATCACTTGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- CTCTAGTCGTTACGAACAGAAA--GACTTGGTTTTGTTATCACTTGATGC
EX758473       <-- CTCTAGTCGTTACGAACAGAAAAAGACTTGGTTTTGTTATCACTTGATGC
EX773140       --> CTCTAGTCGT-ACG-ACAGAAA--GACTTGGTTT-G-TATCACTTGATGC
FD966087       --> ..................................................
EX754068       --> CTCTAGTCGTTACGAACAGAAA-AGACTTGGTTTTGT-ATCACTTGATGC
FD548939       --> ..................................................

               751    -    801
UN23505        --> GTTTT-GTCTTAACAGCAACTTTCCTTTTATTAAGTGGTTAGATCGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776984       <-- GTTTTTGTCTTAACAGCAACTTTCCTTTTATTAAGTGGTTAGATCGCTTC
EX758473       <-- GTTTT-GTCTGAAC....................................
EX773140       --> GTTTT-GTCTTA-CAGCA-CTTTCCT........................
FD966087       --> ..................................................
EX754068       --> GTTTgtctgacagca...................................
FD548939       --> ..................................................

               801    -    851
UN23505        --> CTGCTTACGATCTGTTC
                   ~~~~~~~~~~~~~~~~~
EX776984       <-- CTGCTTACGATCTGTTC
EX758473       <-- .................
EX773140       --> .................
FD966087       --> .................
EX754068       --> .................
FD548939       --> .................