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Alignment for radish unigene UN23506

               1      -     51
UN23506        --> CACTAAATGCAACTACAAACAAAACTTAACAAACCAGTTCAAGGGTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- .......................................CAAGGGTAGAA  Raphanus raphanistrum subsp. maritimus
FD550162       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- ..................................................  Raphanus sativus cv GSK3-1
FD962360       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> CACTAAATGCAACTACAAACAAAACTTAACAAACCAGTTCAAGGGTAGAA  Raphanus raphanistrum subsp. maritimus
EY896030       --> .......................................CAAGGGTAGAA  Raphanus raphanistrum subsp. maritimus
EY903693       --> ....................................gccaAAGGGTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> ...................................gtccaAAGGGTAGAG  Raphanus raphanistrum subsp. landra
FD966953       --> ...................................ggccaAAGGGTAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> ...................................agccaAAGGGTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               51     -    101
UN23506        --> TTTCTTTATTCAAAGATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- TTTCTTTATTCAAAGATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TTTCTTTATTCAAAGATGATGCAAATAATTGGTGATAAAGAAAGGTCTAC
EY896030       --> TTTCTTTATTCAAAGATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
EY903693       --> TTTCTTTATTCAAATATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
FD555185       --> TTTCTTTATTCAAAGATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
FD966953       --> TTTCTTTATTCAAAGATGATGCAGATAATTGGTGATAAAGAAAGGTCTAC
FD976110       --> TTTTTTTATTCAAAGATGATGCAGATAATTGATGATAAAGAAAGGTCTAC
FD580979       --> ..................................................

               101    -    151
UN23506        --> ATCAAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGAAAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- AT-AAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGAAAACTCA  Raphanus raphanistrum subsp. maritimus
FD550162       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- ..................................................  Raphanus sativus cv GSK3-1
FD962360       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> ATCAAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGAAAACTCA  Raphanus raphanistrum subsp. maritimus
EY896030       --> AT-AAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGAAAACTCA  Raphanus raphanistrum subsp. maritimus
EY903693       --> ATCAAAAACTACAAACCATTTATTGGGGGCAAAAGTATGAGGAAA-CTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> ATCAAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGA-GACTCA  Raphanus raphanistrum subsp. landra
FD966953       --> ATCAAA--CTACAAATCATTTATTGGGGGCAAAAGTATGAGGAAAGCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> ATCAAAAACTACAAATCATTTATTGGGGGCAAA-GTATGAGGAAAACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> ..CAAA--CAACAAATCATTTATTGGGGACAAAAGTATGAGGAAAACTCA  Raphanus sativus cv Rat-Tail Radish #3870

               151    -    201
UN23506        --> TGTTTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- TGTCTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TGTTTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
EY896030       --> TGTCTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
EY903693       --> TGTTTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
FD555185       --> TGTTTCTGTCTGACGCTCTGATCAAACTAAACTGTTTTATGCAAACTGTC
FD966953       --> TGTTTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAA-CTGTC
FD976110       --> TGTTTCTGTCTGACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC
FD580979       --> TGTTTCTGTCCAACTCTCTGATCAAACTAAAGTGTTTTATGCAAACTGTC

               201    -    251
UN23506        --> TTTTTAAATTTTGGCGGTTCATAAACTCGTCTTGGGTTTGGCTTTGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- TTTTTAAAATTTGGCGGTTCATAGACTCGTCTTGGGTTTGGCTTTGTAAG  Raphanus raphanistrum subsp. maritimus
FD550162       <-- ........aTTTGGCGGTTCATAAACTCCTCTTGGGTTGGGCTT-GCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- ...................................ggttgggaTTGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- ..........................................cTTGTAG-  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- ..................................................  Raphanus sativus cv GSK3-1
FD962360       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> TTTTTAAAATTTGGCGGTTCATAAACTCGTCTTGGGTTTGGCTTTGTAGG  Raphanus raphanistrum subsp. maritimus
EY896030       --> TTTTTAAAATTTGGCGGTTCATAGACTCGTCTTGGGTTTGGCTTTGTAAG  Raphanus raphanistrum subsp. maritimus
EY903693       --> TTTTTAAATTTTGGCGGTTCATAAAATCCTCTTGGGTTGGGATTTGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> TTTTTAAATTTTGGCGGTTCATAGACTCGTCTTGGGTTTGGCTTTGTAAG  Raphanus raphanistrum subsp. landra
FD966953       --> TTTTTAAATTTTGGAGGTTCATAAACTCCTCTTGGGTTGGGCTTTGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> TTTTTAAATTTTGGCGGTTCATAAACTCCTCTTGGGTTGGGCTTTGCAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> TTTTTAAATTTTGGCGGTTCATAAACTGGTCTTGGGTTTGGCTTCGTAGG  Raphanus sativus cv Rat-Tail Radish #3870

               251    -    301
UN23506        --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
FD550162       <-- CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
EY907863       <-- CAATGCGTCTG-TCACAGTGCGCAT-GTCACGAAT-CCTCTGCAGAAGAC
FD972843       <-- CAATGCGTCTG-TCACAGTGCGCAT-GT-ACGAA-TCCTCTGCAGA-GAC
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAAAAAAC
EY896030       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
EY903693       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
FD555185       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
FD966953       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
FD976110       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAGAAGAC
FD580979       --> CAATGCGTCTGGTCACAGTGCGCATTGTCACGAATTCCTCTGCAAAAAAC

               301    -    351
UN23506        --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. maritimus
FD550162       <-- GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGT-GCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- GGATGTATCCCAACCGTGCTGTCAAAT-GTGCTTTGGT-GCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- ..................................................  Raphanus sativus cv GSK3-1
FD962360       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. maritimus
EY896030       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. maritimus
EY903693       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. landra
FD966953       --> GGATGTATCCCAACCGTGCTGTCAAACTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> GGATGTATCCCAACCGTGCTGTCAAATTGTGCTTTGGTTGCTCCACACTT  Raphanus sativus cv Rat-Tail Radish #3870

               351    -    401
UN23506        --> AAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- AAGCGCAATTGCAATACCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. maritimus
FD550162       <-- GAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- AAGCGCAATTGCAATCCC-TGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- GAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- ..................................................  Raphanus sativus cv GSK3-1
FD962360       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> AAGCGCAATTGCAATACCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. maritimus
EY896030       --> AAGCGCAATTGCAATACCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. maritimus
EY903693       --> AAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> GAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. landra
FD966953       --> AAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> GAGCGCAATTGCAATCCCCTGCATGATCTCAGCTGCATCTGGACCGCACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> GAGCGCAATTGCAATCCCCTGCATGATCTCACCTGCATCTGGACCGCACA  Raphanus sativus cv Rat-Tail Radish #3870

               401    -    451
UN23506        --> TGGACGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- TGGACGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FD550162       <-- TGGACGCTCCAATAACCTTATCAGTCTGCTTATCAACTATTAGCTTCATC
EY907863       <-- TGGACGCTCCAATAACTTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FD972843       <-- TGGACGCTCCAATTACTTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FY453143       <-- ...............................................ATC
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TGGACGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
EY896030       --> TGGACGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
EY903693       --> TGGACGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FD555185       --> TGGATGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FD966953       --> TGGATGCTCCAATAACCTTATCAGTCTGCTCATCAACTATTAGCTTCATC
FD976110       --> TGGACGCTCCAATAACCTTATCAGTCTGCTTATCAACTATTAGCTTCATC
FD580979       --> TGGACCCTCCAATAACCTTATCAGTCTGCTCACCAACTATTAGCTTCATC

               451    -    501
UN23506        --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD550162       <-- AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
EY907863       <-- AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD972843       <-- AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FY453143       <-- AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
EY896030       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
EY903693       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD555185       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD966953       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATTGGATTAAAGCC
FD976110       --> AATGACCTTTCCTGGCGTCCAGAAATGGTGTTCTTCATAGGATTAAAGCC
FD580979       --> AATGACCTTTCCTGGCGTCCAAAAATGGTGTTCTTCATAGGATTAAAGCC

               501    -    551
UN23506        --> TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- TGAGGTGAAAACCAGAATATCcccc.........................
FD550162       <-- TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
EY907863       <-- TGAGGTGAAAACCAGAATATCCCCAGTCGCTTTTTCTACTGCCTCTTCTT
FD972843       <-- TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
FY453143       <-- TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
FD962360       <-- ..............................TTTTTCTACTGCCTCTTCTT
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TGAGGTGAAAACCAAAATATCCCCAGTCGCTTTTTCTACTGCCTCTTCTT
EY896030       --> TGAGGTGAAAACCAGAATATCcccc.........................
EY903693       --> TGAGGTGAAAACCAGAATATCCCCAGTCGCTTTTTCTACTGCCTCTTCTT
FD555185       --> TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
FD966953       --> TGAGGTGAAAA.......................................
FD976110       --> TGAGGTGAAAACCAGAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT
FD580979       --> TGAGGTGAAAACCAAAATATCTCCAGTCGCTTTTTCTACTGCCTCTTCTT

               551    -    601
UN23506        --> CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD550162       <-- CACTGAGACCCACCACAGCTAGTGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907863       <-- CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD972843       <-- CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY453143       <-- CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus sativus cv GSK3-1
FD962360       <-- CACTGAGACCCACTACAGCTAGTGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. maritimus
FD576493       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD980173       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446747       <-- ..................................................  Raphanus sativus cv GSK3-1
FD959584       --> CACTGAGACCCACTACAGCTAGTGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. maritimus
EY896030       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY903693       --> CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555185       --> CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus raphanistrum subsp. landra
FD966953       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976110       --> CACTGAGACCCACCACAGCTAGTGGAGGTATGCAAAACA...........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580979       --> CACTGAGACCCACCACAGCTAATGGAGGTATGCAAAACACAGCACAGGCT  Raphanus sativus cv Rat-Tail Radish #3870

               601    -    651
UN23506        --> ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
EY907863       <-- ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
FD972843       <-- ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
FY453143       <-- ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
FD962360       <-- ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
EY896030       --> ..................................................
EY903693       --> ACATTGCTGTAGTCTGCTTT..............................
FD555185       --> ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ACATTGCTGTAGTCTGCTTTAGTAGGTTTCTCACCAAAAACAGTGTTCGC

               651    -    701
UN23506        --> AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
EY907863       <-- AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
FD972843       <-- TAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
FY453143       <-- AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
FD962360       <-- AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> AAAGCAGGTGGCCTCCATTAATGCAACAGGTGTAAGGTTAATC.......
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> AAAGCAGGTGGCCTCCATTAACGCAACAGGTGTAAGGTTAATCCGGTTTG

               701    -    751
UN23506        --> TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
EY907863       <-- TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
FD972843       <-- TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
FY453143       <-- TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
FD962360       <-- TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> TAGCATCTCCCACAGCCCATATGCTAGGTATATTAGTGCGTGAGTACTCA

               751    -    801
UN23506        --> TCAACCTTCACAGCTCCAGCCTGATCAAGTTCAACACCAACAGCTTCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- TCAACCTTCACAGCCCCAGCCTGATCAAGTTCAACACCAACAGCTTCTAA
EY907863       <-- TCAACCTTCACAGCTCCAGCCTGATCAAGTCCAACACCAACAGCTTCTAA
FD972843       <-- TCAACCTTCACAGCTCCAGCCTGATCAAGTTCAACACCAACAGCTTCTAA
FY453143       <-- TCAACCTTCACAGCCCCAGCCTGATCAAGTTCAACACCAACAGCTTCTAA
FD962360       <-- TCAACCTTCACAGCTCCAGCCTGATCAAGTTCAACACCAACAGCTTCTAA
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> TCAACCTTCACAG.....................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> TCAACCTTCACAGCCCCAGCCTGATCAAGT....................

               801    -    851
UN23506        --> GTTCAATCGCTTGGTGTTAGGATTCCTGCCAGTAGCAAATAGTACAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- GTTCAATCGCTTGGTGTTAGGATTCCTGCCAGTAGCAAATAGTACAACAT
EY907863       <-- GTTCAATCGCTTGGTGTTAGGATTCCTGCCAGTAGCAAATAGTACAACAT
FD972843       <-- GTTCAATCGCTTGGTGTTAGGACTCCTGCCAGTAGCAAATAGTACAACAT
FY453143       <-- GTTCAATCGCTTGGTGTTAGGATTCCTGCCAGTAGCAAATAGTACAACAT
FD962360       <-- GTTCAATCGCTTGGTGTTAGGATTCCTACCAGTAGCAAATAGTACAACAT
FD576493       <-- GTTCAATCGCTTGGTGTTAGGATTCCCGCCAGTAGCAAATAGTACAACAT
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               851    -    901
UN23506        --> CCGCCATGAATTCTTCTCCGTGAGACGAGATTACTTTGATCCCCTCGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- CCGCCATGAATTCTTCTCCGTGAGACGAGATTACTTTGATCCCCTCGTCT
EY907863       <-- CCGCCATGAATTCTTCCCCGTGAGACGAGATTACTTTAATCCCCTCGTCT
FD972843       <-- CCGCCATGAATTCTTCTCCGTGAGACGAGATTACTTTGATCCCCTCGTCT
FY453143       <-- CCGCCATGAATTCTTCCCCGTGAGACGAGATTACTTTTATCCCGTCGTCT
FD962360       <-- CCGCCATGAATTCTTCTCCGTGAGACGAGATTACTTTGATCCCCTCGTCT
FD576493       <-- CCGCCATGAATTCTTCCCCGTGAGACGAGATTACTTTTATCCCGTCGTCT
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               901    -    951
UN23506        --> GTTTTTGTCAACTGAGTCAAACTTGTTTGGGGATGCAGATTAACACCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- GTTTTTGTCAACTGAGTAAAACTTGTTTGGGGATGCAGc...........
EY907863       <-- GTTTTTGTCAACTGAGTCAAACTTGTTTGGGGGTGCAGATTAACACCCCT
FD972843       <-- GTTTTTATCAACTGAGTCAAACTTGTTTGCGGATGCAGATTAACACCCCT
FY453143       <-- GTTTTTATCAGCTGAGTCAAACTTGTTTGGGGATGCAGATTAACACCCCT
FD962360       <-- GTTTTTGTCAACTGAGTCAAACTTGTTTGCGGATGCAGATTAACACCCCT
FD576493       <-- GTTTTTATCAGCTGAGTCAAACTTGTTTGGGGATGCAGATTAACACCCCT
FD980173       <-- ..................................................
FY446747       <-- ..................................................
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               951    -   1001
UN23506        --> TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
FD972843       <-- TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
FY453143       <-- TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
FD962360       <-- TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAATGCCCC
FD576493       <-- TCCTTCAAGATTTCTAGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
FD980173       <-- .tCTTCAAGATTTCTCGCCACTAGTGCTCTCATTTCATCATCAAAGCCCC
FY446747       <-- ..................................................
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1001   -   1051
UN23506        --> TT-AGTGGAAGTTCCTTCCTGAAGAATAAATCCACTGTACCACCCATTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- TT-AGTGGAAGTTCCTTCCTGAAGAATAAATCCACTGTACCACCCATTCC
FD972843       <-- TT-AGTGGAAGTTCCTTCCTGAAGAATAAATCCACTGTACCACCCATTCC
FY453143       <-- TT-AGTGGAAGTTCCTTCCTGAAGAATAAATCCACTGTACCACCCATTCC
FD962360       <-- TT-AGTGGAAGTTCCTTCCTGAAGAATAGATCCACTGTACCACCCATTCC
FD576493       <-- TT-AGTGGAAGTTCCTTCCTGAAGAATAAATCCACTGTACCACCCATTCC
FD980173       <-- TTTAGTGGAAGTTCCTTCCTGAAGAACAAATCCACTGTACCGCCCATTCC
FY446747       <-- ..................................................
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1051   -   1101
UN23506        --> ACGCCATATTGATGCAAACTCCACAGCAATGTACCCTCCTCCAAGCACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ACGCCAc...........................................
FD972843       <-- ACGCCcc...........................................
FY453143       <-- ACGCCATATTGATGCAAACTCCACAGCAATGTACCCTCCTCCAAGCACTA
FD962360       <-- ACGCCATATTGATGCAAACc..............................
FD576493       <-- ACGCCATATTGATGCAAACTCCACAGCAATGTACCCTCCTCCAAGCACTA
FD980173       <-- ACGCCATATTGATGCAAACTCCACAGCAATGTACCCTCCTCCAAGCACTA
FY446747       <-- ....................................TCCTCCAAGCACTA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1101   -   1151
UN23506        --> CAGCACGCTTAGGAAACTCTTCCAAGCTTAAAGCTTCATCAGATGTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- CAGCACGCTTAGGAAACTCTTCCAAGCTTAAAGCTTCATCAGATGTAATT
FD962360       <-- ..................................................
FD576493       <-- CAGCACGCTTAGGAAACTCTTCCAAGCT-AAAGCTTCATCAGATGTAATT
FD980173       <-- CAGCACGCTTGGGAAACTCTTCCAAGCTTAAAGCTTCATCAGATGTAATT
FY446747       <-- CAGCACGCTTAGGAAACTCTTCCAAGCTTAAAGCTTCATCAGATGTAATT
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1151   -   1201
UN23506        --> GCCAGCTCATGTCCAGGAATATTGGGCTTTTGTGCCCGACTGCCAGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- GCCAGCTCATGTCCAGGAATATTGGGCTTTTGTGCCCGACTGCCAGTGGC
FD962360       <-- ..................................................
FD576493       <-- GCCTGCTCATGTCCAGGAATATTGGGCTTTTGTGCCCGACTGCCAGTGGC
FD980173       <-- GCCAGCTCATGTCCAGGAATATTGGGCTTTTGTGCCCGACTGCCAGTGGC
FY446747       <-- GCCAGCTCATGTCCAGGAATATTGGGCTTTTGTGCCCGACTGCCAGTGGC
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1201   -   1251
UN23506        --> AATCAAAATGTGCTTGGCGGTGTAACTAATTTTGGTACCATCGATCTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- AATCAAAATGTGCTTGGCGGTGTAACTAATTTTGGTACCATCGATCTGTC
FD962360       <-- ..................................................
FD576493       <-- AATCAAAATGTGCTTGGCGGTGTAACTAATTTTGGTACCATCGATCTGTC
FD980173       <-- AATCAAAATTTGCTTGGCGGTGTAACTAATTTTGGTACCATCGATCTGTC
FY446747       <-- AATCAAAATGTGCTTGGCGGTGTAACTAATTTTGGTACCATCGATCTGTC
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1251   -   1301
UN23506        --> TCACCTCAACTTCGTTGGGACCAACGATTCTTCCTTCACCTTCATACAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- TCACCTCAACTTCGTTGGGACCAACGATTCTTCCTTCACCTTCATAC...
FD962360       <-- ..................................................
FD576493       <-- TCACCTCAACTTCGTTGGGACCAACGATTCTTCCTTCACCTTCATACAAC
FD980173       <-- TCACCTCAACTTCGTTGGGACCAACGATTCTTCCTTCACCTTCATACAAC
FY446747       <-- TCACCTCAACTTCGTTGGGACCAACGATTCTTCCTTCACCTTCATACAAC
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1301   -   1351
UN23506        --> TTCACAGCAGCATTCGACAACAACCGCTTGTAAATATTGTTCAGCCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- TTCACAGCAGCATTCGACAACAACCGCTTGTAAATATTGTTCAGCCTCAA
FD980173       <-- TTCACAGCAGCATTCGACAACAACCGCTTGTAAATATTGTTCAGTCTCAA
FY446747       <-- TTCACAGCAGCATTCGACAACAACCGCTTGTAAATATTGTTCAGCCTCAA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1351   -   1401
UN23506        --> TATCTCATCAGTCTTCTTTTGCAGAAGCTTCTTCCAGGTGAAGTCCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- TATCTCATCAGTCTTCTTTTGCAGAAGCTTCTTCCAGGTGAAGTCCACAT
FD980173       <-- TATCTCATCAGTCTTCTTTTGCAGAAGCTTCTTCCATGTGAAGTCCACAT
FY446747       <-- TATCTCATCAGTCTTCTTTTGCAGAAGCTTCTTCCAGGTGAAGTCCACAT
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1401   -   1451
UN23506        --> TCTCATTGATTTCCCACCCATAGTTTTTAGCATCCTCAAGTTCGCCACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- TCTCATTGATTTCCCACCCATAGTGTTTAGCATCCTCAAGTTCGCCACCA
FD980173       <-- TCTCATTGATTTCCCACCCATAGTTTTTAGCATCCTCAAGTTCGCCACCA
FY446747       <-- TCTCATTGATTTCCCACCCATAGTTTTTAGCATCCTCAAGTTCACCACCA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1451   -   1501
UN23506        --> TAAGTAGCACCATAGACGAGAATCTTTTTGGGAACACAGCCACGAATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- TAAGTAGCACCATAGACGAGAATCTTTTTGGGAACACAGCCACGAATAAC
FD980173       <-- TAAGTAGCACCATAGACGAGAATCTTTTTGGGAACACAGCCACGAATAAC
FY446747       <-- TAAGTAGCACCATAGACAAGAATCTTTTTGGGAACACAGCCACGAATAAC
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1501   -   1551
UN23506        --> ACACGTTCCACCAACACCACCAATCTCCTCAGAGCTAATAGGGTGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ACACGTTCCACCAACACCc...............................
FD980173       <-- ACACGTTCCACCAACACCACCAATCTCCTCAGAGCTAATAGGGTGAAAGG
FY446747       <-- ACACGTTCCACCAACACCACCAATCTCCTCAGAGCTAATAGGGTGAAAGG
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1551   -   1601
UN23506        --> GAAGCTCACAGATACCAACCTTAGCGCCATGATTAGCGGAAAACCTAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- GAAGCTCACAGATACCAACCTTAGCGCCATGATTAGCGGAAAACCTAGCT
FY446747       <-- GAAGCTCACAGATACCAACCTTAGCGCCATGATTAGCGGAAAACCTAGCT
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1601   -   1651
UN23506        --> GCACGAACCCCGCCGCTCCCTGCGCCTATTACAAACAAATCAAAATCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- GCACGc............................................
FY446747       <-- GCACGAACCCCGCCGCTCCCTGCGCCTATTACAAACAAATCAAAATCATA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1651   -   1701
UN23506        --> GTGAGTCTCCTCCGCCCCCACCGCCTTGTCAACCTCTCCATCATCAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- GTGAGTCTCCTCCGCCCCCACCGCCTTGTCAACCTCTCCATCATCAAGCA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1701   -   1751
UN23506        --> TCTTCCTCCCCATGATCGTGCAGAATCACAAATCCAAACTGAAAAAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- ..................................................
FD550162       <-- ..................................................
EY907863       <-- ..................................................
FD972843       <-- ..................................................
FY453143       <-- ..................................................
FD962360       <-- ..................................................
FD576493       <-- ..................................................
FD980173       <-- ..................................................
FY446747       <-- TCTTCCTCCCCATGATCGTGCAGAATCACAAATCCAAACTGAAAAAAATA
FD959584       --> ..................................................
EY896030       --> ..................................................
EY903693       --> ..................................................
FD555185       --> ..................................................
FD966953       --> ..................................................
FD976110       --> ..................................................
FD580979       --> ..................................................

               1751   -   1801
UN23506        --> AAAACACAAACGATGATCAATCAATCACACCTATGGAACGAAAGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY900504       <-- .................................................
FD550162       <-- .................................................
EY907863       <-- .................................................
FD972843       <-- .................................................
FY453143       <-- .................................................
FD962360       <-- .................................................
FD576493       <-- .................................................
FD980173       <-- .................................................
FY446747       <-- AAAACACAAACGATGATCAATCAATCACACCTATGGAACGAAAGAAAGC
FD959584       --> .................................................
EY896030       --> .................................................
EY903693       --> .................................................
FD555185       --> .................................................
FD966953       --> .................................................
FD976110       --> .................................................
FD580979       --> .................................................