1      -     51
UN23515        --> ACTCAAATTCAAAGATCTATTACCATAACAGAGGACGCGAAGATATAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- ..................................................
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> ACTCAAATTCAAAGATCTATTACCATAACAGAGGACGCGAAGATATAAGC
FD984488       --> ...........AAGATCTATTACCATAACAGAGGACGCGAAGATATAAGC
FD565860       --> ..............................GAGGACGCAAAGATATAAGC
FD544574       --> .................................GACGCGAAGATATAAGC
EX907941       --> .................................ggCGCAAAGATATAAGC
EY943753       --> ....................................gcaAAGATATAAGC
EW736857       --> ........................................cGATATAAGC
FD968173       --> .........................................GATATAAGC
EV532535       --> .........................................gcTATAAGC
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> ..................................................
FD982747       --> ..................................................
EV539707       --> ..................................................
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               51     -    101
UN23515        --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ...........................................aatAAAC
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- ..................................................
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD984488       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD565860       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD544574       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EX907941       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EY943753       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EW736857       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD968173       --> TCAAAATTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EV532535       --> TCAAATTTAATATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EY935576       --> ...........ATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD544567       --> ...........ATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD969811       --> ...........ATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
FD982747       --> ...........ATGGTTGTATAAAATTT-GGTTAAACCCCCGAATAAAAC
EV539707       --> ....................TAAAATTTAGGTTAAACCCCCGAATAAAAC
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               101    -    151
UN23515        --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- CC--ACAAAGCAGATATT-GAGAGACTAAAAGGGTTTATTAACCAATACA
EW716252       <-- ........................................AACCAACACA
FD972256       <-- ..................................................
EY915506       <-- ..................................................
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD984488       --> CC--ACAAAGCAGATATTTGAGAGACTACAAGGGTTTATTAACCAACACA
FD565860       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD544574       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
EX907941       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAATACA
EY943753       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
EW736857       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD968173       --> CCCCACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
EV532535       --> CC--ACAAAGCAGATATTTGAGAGACTACAAGGGTTTATTAACCAACACA
EY935576       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD544567       --> CCCCACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD969811       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
FD982747       --> CC--ACAAAGCAGATATTTGAAAGACTACAAGGGTTTATTAACCAACACA
EV539707       --> CC--ACAAAGCAGATATTTGAGAGACTAAAAGGGTTTATTAACCAACACA
EX892636       --> ...................gcGAGACTAAAAGGGTTTATTAACCAACACA
EY901778       --> ...................ggGAGACTAAAAGGGTTTATTAACCAACACA
FD953636       --> ...................ggGAGACTAAAAGGGTTTATTAACCAACACA
FD985662       --> ..................................................

               151    -    201
UN23515        --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EW716252       <-- GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD972256       <-- ..................................................
EY915506       <-- ..................................................
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD984488       --> GCTTCCATTACAAGTAAAAAAAAACAATGCTTCGAGATTTATATATCAAC
FD565860       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD544574       --> GCTTC-ATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EX907941       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EY943753       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EW736857       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD968173       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EV532535       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EY935576       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD544567       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD969811       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD982747       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EV539707       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EX892636       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
EY901778       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGATTTATATATCAAC
FD953636       --> GCTTCCATTACAAGTAAGAAAAAACAATGCTTCGAGACTTATATATCAAC
FD985662       --> ..................................................

               201    -    251
UN23515        --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus var. oleiformis
FD972256       <-- .aagactcagatGATGATG------ATGATG---ATGA---------GAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD569176       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX888751       <-- ..................................................  Raphanus sativus var. oleiformis
EY905318       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> CTGGAAGACTCAGCTGATG------ATGATGGTGATGA---------GAG  Raphanus sativus var. oleiformis
FD984488       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---TGATGAGAG  Raphanus raphanistrum subsp. landra
FD565860       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus var. oleiformis
FD544574       --> CTGGAAGACTCAGATGATG------ATGATG---ATGATGATGATGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA------TGAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---TGATGAGAG  Raphanus raphanistrum subsp. maritimus
EY935576       --> CTGGAAGACTCAGATGATG------ATGATG---A------------GAG  Raphanus sativus cv Early Scarlet Globe
FD544567       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---TGATGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> CTGGAAGACTCAGATGATGGTGATGATGATG---ATGA---------GAG  Raphanus raphanistrum subsp. landra
EV539707       --> CTGGAAGACTCAGATGATG------ATGA------------------GAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> CTGGAAGACTCAGATGATG------ATGATGGTGATGA---------GAG  Raphanus sativus var. oleiformis
EY901778       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> CTGGAAGACTCAGATGATG------ATGATG---ATGA---------GAG  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               251    -    301
UN23515        --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EW716252       <-- AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD972256       <-- AAACGTAGACACTCTCTAATC-TTCTTCTTGAAGGCTCCTTTGGGGATTT
EY915506       <-- ...........................................GGGATTT
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD984488       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD565860       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD544574       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EX907941       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EY943753       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EW736857       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD968173       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EV532535       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EY935576       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD544567       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD969811       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD982747       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EV539707       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EX892636       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
EY901778       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD953636       --> AAACGTAGACACTCTCTAATCCTTCTTCTTGAAGGCTCCTTTGGGGATTT
FD985662       --> ..................ATCCTTCTTCTTGAAGGGTCCTTTGGGGATTT

               301    -    351
UN23515        --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- CGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
EW716252       <-- TGCTCATGGCCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
FD972256       <-- TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EY915506       <-- -GCTCATGACCT-ACTCAA--ACTTCTCATCAAGCACAGCGTACTGCTTC
FD988619       <-- ......................CTTCTCATCAAGCACAGCGTACTGCTTC
FD569176       <-- ...................................ACAGCGTATTGCTTC
EV552607       <-- ..................................................
FD958068       <-- ..................................................
FD548377       <-- ..................................................
EV534913       <-- ..................................................
FD548370       <-- ..................................................
FD974311       <-- ..................................................
EV528586       <-- ..................................................
EX888751       <-- ..................................................
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD984488       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD565860       --> TGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
FD544574       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EX907941       --> CGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
EY943753       --> TGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
EW736857       --> TGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
FD968173       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EV532535       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EY935576       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD544567       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD969811       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD982747       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EV539707       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EX892636       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
EY901778       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC
FD953636       --> TGCTCATGACCTTACTCAACACCTTCTCATCAAGCACAGCGTATTGCTTC
FD985662       --> TGCTCATGACCTTACTCAAAACCTTCTCATCAAGCACAGCGTACTGCTTC

               351    -    401
UN23515        --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus var. oleiformis
FD972256       <-- TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- TTGATCTC-GTCATTGC-TTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. landra
FD569176       <-- TCGATCTC-TTCATCG-CTTTTCAGCAAAGTCGTCTACTTTATCATCATA  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- ..........TCATTGCCTTT-CAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- ............catcgCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- ..............attgcTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- .....................TCAGCAAAGGCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- .......................................TTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- .............................................TCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX888751       <-- ..................................................  Raphanus sativus var. oleiformis
EY905318       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus var. oleiformis
FD984488       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. landra
FD565860       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus var. oleiformis
FD544574       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGCCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. maritimus
EY935576       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Early Scarlet Globe
FD544567       --> TTGATCTCCTTCGTTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. landra
EV539707       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGGCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus var. oleiformis
EY901778       --> TTGATCTCCTTCATTGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> TTGATCTCCTTCATCGCCTTTTCAGCAAAGTCATCTACTTTATCATCATA  Raphanus raphanistrum subsp. landra

               401    -    451
UN23515        --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EW716252       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD972256       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EY915506       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD988619       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD569176       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EV552607       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD958068       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD548377       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EV534913       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD548370       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD974311       <-- CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EV528586       <-- ..........................................GATATAGA
EX888751       <-- ...........................................ATATAGA
EY905318       <-- ..................................................
FD949153       <-- ..................................................
FD941305       <-- ..................................................
FD936972       --> CTTTTCGTAAAGCACGGGAACGGCGAAGAGAA-ACCAGTTGCGATATAGA
FD984488       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD565860       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD544574       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EX907941       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EY943753       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EW736857       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD968173       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EV532535       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EY935576       --> TTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD544567       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD969811       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD982747       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACGGTTGCGATATAGA
EV539707       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EX892636       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
EY901778       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD953636       --> CTTTTCGTAAAGCACGGGAACGGTGAAGAGAAGAACAGTTGCGATATAGA
FD985662       --> CTTTTCGTAAAGCACGGGAACGGTGA........................

               451    -    501
UN23515        --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- TAAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus var. oleiformis
FD972256       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACAC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. landra
FD569176       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- TCAAGGTCATGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCCCACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. maritimus
EX888751       <-- TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus var. oleiformis
EY905318       <-- ....................GAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus var. oleiformis
FD984488       --> TCAAGGGCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. landra
FD565860       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus var. oleiformis
FD544574       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. maritimus
EY935576       --> TCGAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Early Scarlet Globe
FD544567       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. landra
EV539707       --> TCAAGGTCATGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus var. oleiformis
EY901778       --> TCAAGGTCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> TCAAGGGCAAGAAGTTGCATGAGCTACCAACTTTGGACAAAACCC-ACAA  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               501    -    551
UN23515        --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus var. oleiformis
FD972256       <-- ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAACGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- GCCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- ACCCGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. landra
FD569176       <-- GCCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- GCCAGCAACAACCA----TAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- GCCAGCAACAACCATAAGGAACTTCCTGAGATCTCTCCCTAATGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAACGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- ACCCGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. maritimus
EX888751       <-- GCCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus sativus var. oleiformis
EY905318       <-- ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> GCCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus sativus var. oleiformis
FD984488       --> ACCCGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. landra
FD565860       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus var. oleiformis
FD544574       --> GCCAGCAACAACCATAAGGAACTTCCTGAGATCTCTCCCTAATGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> GCCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAACGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> ACCCGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. maritimus
EY935576       --> GCCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAACGCGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ACCCGCAACAACCATAAGGAAATTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. landra
EV539707       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> GCCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus sativus var. oleiformis
EY901778       --> ACCAGCAACAACCATGAGGAACTTCTTGAGATCTCTCCCTAATGCAATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> ACCAGCAACAACCATAAGGAACTTCTTGAGATCTCTCCCTAATGCGATGT  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN23515        --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGGAGCA  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus var. oleiformis
FD972256       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- TCCTAAGAAGAGTAAAACCACGATTGATCTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. landra
FD569176       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- TCCTAAGAAGAGTAAAACCACGATTGATCTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- TCCTAAGAAGAGTAAAACCACGATTGATCTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. maritimus
EX888751       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus var. oleiformis
EY905318       <-- TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ...........................TTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus var. oleiformis
FD984488       --> TCCTAAaaa.........................................  Raphanus raphanistrum subsp. landra
FD565860       --> TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus var. oleiformis
FD544574       --> TCCTAAGAAGAGTAAAACCACGATTGATCTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGGAGCA  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> TCCTAAGAAGAGAATAACCACGATTGATCTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> TCCTAAGAAGAGAAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGCCCAGAAGCA  Raphanus raphanistrum subsp. maritimus
EY935576       --> TCCTAAGAAGAGTAAAACCACGATTAATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Early Scarlet Globe
FD544567       --> TCCTAAGAA.........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGCCCAGAA...  Raphanus raphanistrum subsp. landra
EV539707       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus var. oleiformis
EY901778       --> TCCTAAGAAGAGTAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> TCCTAAAAAGAAAAAAACCACGATTGATTTCAATCCTTAGTCCAGAAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               601    -    651
UN23515        --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGc.....................  Raphanus sativus var. oleiformis
FD972256       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. landra
FD569176       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- AGCTGGAGAACAACTTCCTCGGGGGATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. maritimus
EX888751       <-- AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus var. oleiformis
EY905318       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus var. oleiformis
FD984488       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565860       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus var. oleiformis
FD544574       --> AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> AGCTGGAGAACc......................................  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. maritimus
EY935576       --> AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACT................  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ..................................................  Raphanus raphanistrum subsp. landra
EV539707       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus var. oleiformis
EY901778       --> AGCTGGAGAACAACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> AGCTGGAGAACGACTTCCTCGGGG-ATGTGAACTTCAGGGATATGAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               651    -    701
UN23515        --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- ..................................................  Raphanus sativus var. oleiformis
FD972256       <-- GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. landra
FD569176       <-- GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. maritimus
EX888751       <-- GTTTCTTGTGAATGAAGGTGGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus sativus var. oleiformis
EY905318       <-- GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..................................................  Raphanus sativus var. oleiformis
FD936972       --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus sativus var. oleiformis
FD984488       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565860       --> GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus var. oleiformis
FD544574       --> GTTTCTTGTGAAT.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACTGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus raphanistrum subsp. maritimus
EY935576       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ..................................................  Raphanus raphanistrum subsp. landra
EV539707       --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> GTTTCTTGTGAATGAAGGTGGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus sativus var. oleiformis
EY901778       --> GTTTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAACACAGCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> GTGTCTTGTGAATGAAGGTAGTAGCACTAGACCACAAGAACAAAACAGCG  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               701    -    751
UN23515        --> AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- AGAGCGACAATAGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EW716252       <-- ..................................................
FD972256       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EY915506       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD988619       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD569176       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EV552607       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD958068       <-- AGAGCGACAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD548377       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EV534913       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD548370       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGCTGTACTGAAG
FD974311       <-- AGAGCAAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTATTGAAG
EV528586       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EX888751       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EY905318       <-- AGAGCAAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTATTGAAG
FD949153       <-- AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD941305       <-- ..................................................
FD936972       --> AGAGCGAGAATCGAGATGTGGC............................
FD984488       --> ..................................................
FD565860       --> AGAGCGACAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD544574       --> ..................................................
EX907941       --> AGAGCGACAATAGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EY943753       --> ..................................................
EW736857       --> AGAGCGACAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
FD968173       --> AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EV532535       --> AGAGCGAGAATCGAGATGTGGCCGAAGAGAG...................
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> AGAGCAAGAATCGAGATGTGGCC...........................
FD982747       --> ..................................................
EV539707       --> AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EX892636       --> AGAGCGAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTACTGAAG
EY901778       --> AGAGCAAGAATCGAGATGTGGCCGAAGAGAGTGAGGAGGTTGTATTGAAG
FD953636       --> AGAGCGACAATCGAGATGTGGCCGAAGA......................
FD985662       --> ..................................................

               751    -    801
UN23515        --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- ..................................................  Raphanus sativus var. oleiformis
FD972256       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- CAGCTCGAATAGGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. landra
FD569176       <-- CAACTCGAATAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- CAGCTCGAATAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- CAGCTCGAATAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- ATACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. maritimus
EX888751       <-- CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus var. oleiformis
EY905318       <-- ATACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- CAACTCGAATAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ..........................................TCCTCCTG  Raphanus sativus var. oleiformis
FD936972       --> ..................................................  Raphanus sativus var. oleiformis
FD984488       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565860       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus var. oleiformis
FD544574       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCAAACACTCCTCCTG  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY935576       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ..................................................  Raphanus raphanistrum subsp. landra
EV539707       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> CAACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus sativus var. oleiformis
EY901778       --> ATACTCGAACAAGATCCAGGAGAGAGTTGCAGCACCCAACACTCCTCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               801    -    851
UN23515        --> ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ATACCTTCTTGTTCCTCCATAGGAATc.......................  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- ..................................................  Raphanus sativus var. oleiformis
FD972256       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. landra
FD569176       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- ATACCTTCTTGTTTCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. maritimus
EX888751       <-- ATACCTTCTTGTTTCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus var. oleiformis
EY905318       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- ATACCTTCTTGTTTCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus var. oleiformis
FD936972       --> ..................................................  Raphanus sativus var. oleiformis
FD984488       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565860       --> ..................................................  Raphanus sativus var. oleiformis
FD544574       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> ATACCTTCTT........................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> ATACCTTCTTGTTCCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> ATACCTTCT.........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY935576       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ..................................................  Raphanus raphanistrum subsp. landra
EV539707       --> ATACCTTCTTGTTTCTCCATAGGAATATGTCGGCAGGTTTGCCGCCACCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> ATACCTTCTTGTTTCTC.................................  Raphanus sativus var. oleiformis
EY901778       --> ATACCTTCTTGTTCCTCCA...............................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               851    -    901
UN23515        --> AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW716252       <-- ..................................................  Raphanus sativus var. oleiformis
FD972256       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCC.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY915506       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988619       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGTAGATCTTCGT  Raphanus raphanistrum subsp. landra
FD569176       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus sativus cv Early Scarlet Globe
EV552607       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD958068       <-- GAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD548377       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV534913       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548370       <-- AAGGCCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGTAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD974311       <-- AAGACCTTGTGGACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528586       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGTAGATCTTCGT  Raphanus raphanistrum subsp. maritimus
EX888751       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGTAGATCTTCGT  Raphanus sativus var. oleiformis
EY905318       <-- AAGACCTTGTGGACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD949153       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus sativus cv Early Scarlet Globe
FD941305       <-- AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGTAGATCTTCGT  Raphanus sativus var. oleiformis
FD936972       --> ..................................................  Raphanus sativus var. oleiformis
FD984488       --> ..................................................  Raphanus raphanistrum subsp. landra
FD565860       --> ..................................................  Raphanus sativus var. oleiformis
FD544574       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX907941       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943753       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EW736857       --> AAGACCTTGTGAACAGGCTTTTCTCTTCCGAAGAGGCGGAAGATCTTCGT  Raphanus sativus cv Rat-Tail Radish #3870
FD968173       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV532535       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY935576       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544567       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD969811       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD982747       --> ..................................................  Raphanus raphanistrum subsp. landra
EV539707       --> AA................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892636       --> ..................................................  Raphanus sativus var. oleiformis
EY901778       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD953636       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD985662       --> ..................................................  Raphanus raphanistrum subsp. landra

               901    -    951
UN23515        --> CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- CATGATAGAGGATTCTTTCTTCTCGTCGTCTGAATCTGAAGAAGAAGAGT
FD988619       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGA-TCTGAAGAAGAAGAGG
FD569176       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
EV552607       <-- CTTGATAGAGGATTCTTTCTTCTCGTCGTCTGAATCTGAAGAAGAAGAGT
FD958068       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD548377       <-- CTTGATAGAGGATTCTTTCTTCTCGTCGTCTGAATCTGAAGAAGAAGAGT
EV534913       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD548370       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD974311       <-- CTTGATAGAGGATTCTTTCTTCTCGTCGTCTGAATCTGAAGAAGAAGAGT
EV528586       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
EX888751       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
EY905318       <-- CTTGATAGAGGATTCTTTCTTCTCGTCGTCTGAATCTGAAGAAGAAGAGT
FD949153       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD941305       <-- CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD936972       --> ..................................................
FD984488       --> ..................................................
FD565860       --> ..................................................
FD544574       --> ..................................................
EX907941       --> ..................................................
EY943753       --> ..................................................
EW736857       --> CTTGATAGAGGATTCTTTCTTCTCGTCATCTGAATCTGAAGAAGAAGAGG
FD968173       --> ..................................................
EV532535       --> ..................................................
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> ..................................................
FD982747       --> ..................................................
EV539707       --> ..................................................
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               951    -   1001
UN23515        --> AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- TATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD988619       <-- AATCGTGACCATGGATCTTCTCAGCTc.......................
FD569176       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
EV552607       <-- TATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD958068       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD548377       <-- TATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
EV534913       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD548370       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD974311       <-- TATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
EV528586       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
EX888751       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
EY905318       <-- TATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD949153       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD941305       <-- AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD936972       --> ..................................................
FD984488       --> ..................................................
FD565860       --> ..................................................
FD544574       --> ..................................................
EX907941       --> ..................................................
EY943753       --> ..................................................
EW736857       --> AATCGTGACCATGGATCTTCTCAGCTATCTTCTCCATGATTGATTCCTCG
FD968173       --> ..................................................
EV532535       --> ..................................................
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> ..................................................
FD982747       --> ..................................................
EV539707       --> ..................................................
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               1001   -   1051
UN23515        --> TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- TGTTTGTGCTCTTCAGCCATCGTTACTTTACTTCCTTGAATCCTCCGCAA
FD988619       <-- ..................................................
FD569176       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGC..
EV552607       <-- TGTTTGTGCTCTTCAGCCATCGTTACTTTACTTCCTTGAATCCTCCGCAA
FD958068       <-- TGTTTGTGCTCTTCCGTCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
FD548377       <-- TGTTTGTGCTCTTCAGCCATCGTTACTTTACTTCCTTGAATCCTCCGCAA
EV534913       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACC-------
FD548370       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGC..
FD974311       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
EV528586       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGC..
EX888751       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
EY905318       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
FD949153       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGC..
FD941305       <-- TGTTTGTGCTCTTCCGCCATCGTTACTTTACTTCCTTGAAACCTCCGCAA
FD936972       --> ..................................................
FD984488       --> ..................................................
FD565860       --> ..................................................
FD544574       --> ..................................................
EX907941       --> ..................................................
EY943753       --> ..................................................
EW736857       --> TGTTTGTGCTCTTCCG..................................
FD968173       --> ..................................................
EV532535       --> ..................................................
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> ..................................................
FD982747       --> ..................................................
EV539707       --> ..................................................
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               1051   -   1101
UN23515        --> AAAA------CCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ..................................................
EW716252       <-- ..................................................
FD972256       <-- ..................................................
EY915506       <-- AAAA------CCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATGAA
FD988619       <-- ..................................................
FD569176       <-- ..................................................
EV552607       <-- AAAA------CCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATGAA
FD958068       <-- A----------AAAAAACCCTAAAACTCTC-TGTTTCAGACGTGAATGAA
FD548377       <-- AAAA------CCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATcc.
EV534913       <-- ---T------CCGCAAAACCACTCTCTCGCTTGGTTCAGACGTGAATGAA
FD548370       <-- ..................................................
FD974311       <-- AAAA--AAAACCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATc..
EV528586       <-- ..................................................
EX888751       <-- AAAA------CCCTAAAACCACTTTCTCGCTTGGTTCAGACGTGAATGAA
EY905318       <-- AAAAAAAAAACCCTAAAACCACTCTCTCGCTTGGTTCAGACGTGAATcc.
FD949153       <-- ..................................................
FD941305       <-- AAAA------CCCTAAAACCACTTTCTCGCTTGGTTCAGACGTGAATGAA
FD936972       --> ..................................................
FD984488       --> ..................................................
FD565860       --> ..................................................
FD544574       --> ..................................................
EX907941       --> ..................................................
EY943753       --> ..................................................
EW736857       --> ..................................................
FD968173       --> ..................................................
EV532535       --> ..................................................
EY935576       --> ..................................................
FD544567       --> ..................................................
FD969811       --> ..................................................
FD982747       --> ..................................................
EV539707       --> ..................................................
EX892636       --> ..................................................
EY901778       --> ..................................................
FD953636       --> ..................................................
FD985662       --> ..................................................

               1101   -   1151
UN23515        --> TGAGAGAGAAACGGAGATCC
                   ~~~~~~~~~~~~~~~~~~~~
EX903974       <-- ....................
EW716252       <-- ....................
FD972256       <-- ....................
EY915506       <-- TGAGAGAGAAACGGAGATCC
FD988619       <-- ....................
FD569176       <-- ....................
EV552607       <-- TGAGAGAGAAACGGAGATCC
FD958068       <-- TGAGTGAGAAACGGA.....
FD548377       <-- ....................
EV534913       <-- TGAGTGAGAAACGGAGATCC
FD548370       <-- ....................
FD974311       <-- ....................
EV528586       <-- ....................
EX888751       <-- TGAGAGAGAAACGGAGATC.
EY905318       <-- ....................
FD949153       <-- ....................
FD941305       <-- TGAGAGAGAAACGGAGATCC
FD936972       --> ....................
FD984488       --> ....................
FD565860       --> ....................
FD544574       --> ....................
EX907941       --> ....................
EY943753       --> ....................
EW736857       --> ....................
FD968173       --> ....................
EV532535       --> ....................
EY935576       --> ....................
FD544567       --> ....................
FD969811       --> ....................
FD982747       --> ....................
EV539707       --> ....................
EX892636       --> ....................
EY901778       --> ....................
FD953636       --> ....................
FD985662       --> ....................