1      -     51
UN23576        --> GACAGTTCGAGTATTTTGTTTGAGAAAGAAAGTTAGAAAATGTTGCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- ...................ggGAGAAAGAAAGTTAGAAAATGTTGCCTTT  Raphanus raphanistrum subsp. maritimus
FD984185       <-- ...................ggGAGAAAGAAAGTTAGAAAATGTTGCCTTT  Raphanus raphanistrum subsp. landra
EY910023       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899373       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898230       --> GACAGTTCGAGTATTTTGTTTGAGAAAGAAAGTTAGAAAATTTTGCCTTT  Raphanus sativus cv Early Scarlet Globe
EV528007       --> ...................ggGAGAAAGAAAGTTAGAAAATGTTGCCTTT  Raphanus raphanistrum subsp. maritimus
EX895163       --> ...................ggGAGAAAGAAAGTTAGAAAATTTTGCCTTT  Raphanus sativus cv Early Scarlet Globe
EY913859       --> ...................ggGAGAAAGAAAGTTAGAAAATTTTGCCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988269       --> ...................ggGAGAAAGAAAGTTAGAAAATGTTGCCTTT  Raphanus raphanistrum subsp. landra

               51     -    101
UN23576        --> GTTCTTTCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- GTTCTTTCGCTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAG  Raphanus raphanistrum subsp. maritimus
FD984185       <-- GTTCTTTCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAG  Raphanus raphanistrum subsp. landra
EY910023       <-- GTTCTTTCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899373       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX898230       --> GTTCTATCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAA  Raphanus sativus cv Early Scarlet Globe
EV528007       --> GTTCTTTCGCTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAG  Raphanus raphanistrum subsp. maritimus
EX895163       --> GTTCTATCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAA  Raphanus sativus cv Early Scarlet Globe
EY913859       --> GTTCTTTCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD988269       --> GTTCTTTCGTTACACAGTGTATGTGTATTTGTATATAGTCATTTATGTAG  Raphanus raphanistrum subsp. landra

               101    -    151
UN23576        --> ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCATGATGATAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- ATCAAAGCTTACCTGTTTCCCCACTTAGCACGAAGTTCCATGATGATAAG
FD984185       <-- ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCATGATGATAAG
EY910023       <-- ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCACGATGATAAG
EX899373       <-- ..................................................
EX898230       --> ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCATGATGATAAG
EV528007       --> ATCAAAGCTTACCTGTTTCCCCACTTAGCACGAAGTTCCATGATGATAAG
EX895163       --> ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCATGATGATAAG
EY913859       --> ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCACGATGATAAG
FD988269       --> ATCAAAACTTACCTGTTTCCCCACTTAGCATGAAGTTCCATGATGATAAG

               151    -    201
UN23576        --> TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
FD984185       <-- TTGCCCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
EY910023       <-- TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
EX899373       <-- ..................................................
EX898230       --> TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTC--GGCGGAGATAGT
EV528007       --> TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
EX895163       --> TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
EY913859       --> TTGCTCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT
FD988269       --> TTGCCCCTCCGGCGTGATGTTTCCACGTCGTACGTCAGGGCGGAGATAGT

               201    -    251
UN23576        --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
FD984185       <-- TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
EY910023       <-- TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
EX899373       <-- ..................................................
EX898230       --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
EV528007       --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
EX895163       --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
EY913859       --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA
FD988269       --> TCAGCCACCGGAGCCGGCAACTTTTCCCGATTTGGCGAGAGTGTTCCAAA

               251    -    301
UN23576        --> CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- CGCCATCCCCGTGGTTTGCGATATAGTTGATAAGAATAAGATCTTCTTCC
FD984185       <-- CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
EY910023       <-- CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
EX899373       <-- ..................................................
EX898230       --> CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
EV528007       --> CGCCATCCCCGTGGTTTGCGATATAGTTGATAAGAATAAGATCTTCTTCC
EX895163       --> CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
EY913859       --> CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC
FD988269       --> CGCCATCCCCGTGGTTGGCGATATAGTTGATAAGAATAAGATCTTCTTCC

               301    -    351
UN23576        --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
FD984185       <-- ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
EY910023       <-- ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
EX899373       <-- ......................CCTTTGTTTCTCCTGATGATCCCGAACC
EX898230       --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
EV528007       --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
EX895163       --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
EY913859       --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC
FD988269       --> ATCGTCCATGGTCCTTTTCTCACCTCTGTTTCTCCTGATGATCCCGAACC

               351    -    401
UN23576        --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
FD984185       <-- TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
EY910023       <-- TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
EX899373       <-- TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTTTTATTTATTTATA
EX898230       --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
EV528007       --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
EX895163       --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
EY913859       --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA
FD988269       --> TCCACTACATATTCCTCCTCTTTTGTCCATTTTATTCTTATTTATTTATA

               401    -    451
UN23576        --> ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAGGAG
FD984185       <-- ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAGAGAGACAAGTAAGAG
EY910023       <-- ACTCTTATAGCTAGAGGGAGGGGAATTTAAAAGAAAGAGACAAGTAAGAG
EX899373       <-- ACTTTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAAGAA
EX898230       --> ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAAGAG
EV528007       --> ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAGGAG
EX895163       --> ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAAAGAGACAAGTAAGAA
EY913859       --> ACTCTTATAGCTAGAGGGAGGGGAATTTAAAAGAAAGAGACAAGTAAGAG
FD988269       --> ACTCTTATAGCTAGAGGGAGAGGAATTTAAAAGAGAGAGACAAGTAAGAG

               451    -    501
UN23576        --> AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
FD984185       <-- AGAAGGTTGTGATGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
EY910023       <-- AGAAGGTTGTGGTGAGTTGATATTGAAGGTCGTGGAAGGTGAGCAACTGC
EX899373       <-- AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
EX898230       --> AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
EV528007       --> AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
EX895163       --> AGAAGGTTGTGGTGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC
EY913859       --> AGAAGGTTGTGGTGAGTTGATATTGAAGGTCGTGGAAGGTGAGCAACTGC
FD988269       --> AGAAGGTTGTGATGAGTTGATATTGAAGGTTGTGGAAGGTGAGCAACTGC

               501    -    551
UN23576        --> TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
FD984185       <-- TTTTATAGAGACT.....................................
EY910023       <-- TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
EX899373       <-- TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
EX898230       --> TTTTATAGAGACTAAATTCACCGCG.........................
EV528007       --> TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
EX895163       --> TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
EY913859       --> TTTTATAGAGACTAAATTCACCGCGTGATTAGCAAAGCTTAATCCAAATT
FD988269       --> TTTTATAGAGACT.....................................

               551    -    601
UN23576        --> CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
FD984185       <-- ..................................................
EY910023       <-- CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
EX899373       <-- TTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
EX898230       --> ..................................................
EV528007       --> CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
EX895163       --> CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
EY913859       --> CTTAATTAATCCTGTATGGTCATTAGCTTAAAGTTTTAATTAATCATGTA
FD988269       --> ..................................................

               601    -    651
UN23576        --> ATAAACTTTCGTAATTGTTAGGATCTGTACTATACTAATAACACATGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- ATAAACTTTCGTAATTGTTAGGATCTGTACTATACTAATAACACATGCGA
FD984185       <-- ..................................................
EY910023       <-- ATAAACTTTCGTAATTGTTAGGATCTATACTATACTAATAACACATGTGA
EX899373       <-- ATAAACTTTCGTAATTGTTAGGATCTGTACTATACT..............
EX898230       --> ..................................................
EV528007       --> ATAAACTTTCGTAATTGTTAGGATCTGTACTATACTAATAACACATGCGA
EX895163       --> ATAAACTTTCGTAATTGTTAGGATCTGTACTATACT..............
EY913859       --> ATAAACTTTCGTAATTGTTAGGATCTATACTATACTAATAACACATGTGA
FD988269       --> ..................................................

               651    -    701
UN23576        --> CTATGTATAACACCTTTCACGACCTAACCATATACAATAACATAGTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV532105       <-- CTATGTATAACAaaag..................................
FD984185       <-- ..................................................
EY910023       <-- CTATGTATAACACCTTTCACGACCTAACCATATACAATAACATAGTTTCT
EX899373       <-- ..................................................
EX898230       --> ..................................................
EV528007       --> CTATGTATAACAaaag..................................
EX895163       --> ..................................................
EY913859       --> CTATGTATAACACCTTTCACGACCTAACCATATACAATAACATAGTTTCT
FD988269       --> ..................................................

               701    -    751
UN23576        --> TCATCC
                   ~~~~~~
EV532105       <-- ......
FD984185       <-- ......
EY910023       <-- TCATCC
EX899373       <-- ......
EX898230       --> ......
EV528007       --> ......
EX895163       --> ......
EY913859       --> TCATCC
FD988269       --> ......