1      -     51
UN24202        --> GGTCTGGGTGGAAGCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> GGTCTGGGTGGAAGCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAAC
FY441834       --> ...CTGGGTGGA-GCTTGTCGTTGGTGATGTCTTCCGTGCTCCGTCCAAT
FD543213       --> ..................................................
FD535647       --> ..................................................

               51     -    101
UN24202        --> CCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTTCAGATTCTTGGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> CCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTTCAGATTCTTGGCAT
FY441834       --> CCTTCGCTTCTGTGTGTCATGGTTGGTGACGGTGTTCAGATTCTTGGCAT
FD543213       --> ..................................................
FD535647       --> ..................................................

               101    -    151
UN24202        --> GGCTGTTGTGACTATCTTGTTCGCTGCTCTTGGGTTCATGTCACCGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> GGCTGTTGTGACTATCTTGTTCGCAGCTCTTGGGTTCATGTCACCGGCTT
FY441834       --> GGCTGTTGTGACTATCTTGTTCGCTGCTCTTGGGTTCATGTCACCGGCTT
FD543213       --> .........................GCTCTTGGGTTCATGTCACCGGCTT
FD535647       --> ..................................................

               151    -    201
UN24202        --> CGCGTGGAACACTTATCACCGGTATGCTCTTCTTCTACATGATCCTTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> CACGTGGAACACTTATCACGGGTATGCTCTTCTTCTACATGATCCTTGGC
FY441834       --> CGCGTGGAACACTTATCACCGGTATGCTCTTCTTCTACATGATCCTTGGC
FD543213       --> CGCGTGGAACACTTATCACCGGTATGCTCTTCTTCTACATGATCCTTGGC
FD535647       --> ..................................................

               201    -    251
UN24202        --> ATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> ATCGCAGCTGGTTATGTTGCGGTTCGTCTCTGGAGGACGATTGGATGTGG
FY441834       --> ATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGG
FD543213       --> ATTGCAGCTGGTTATGTTGCTGTTCGTCTCTGGAGGACGATTGGATGTGG
FD535647       --> ......................................GATTGGATGTGG

               251    -    301
UN24202        --> TGAACACCGTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> TGAACACCGTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCC
FY441834       --> TGAACACCGTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCC
FD543213       --> TGAACACCGTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCC
FD535647       --> TGAACACCGTGGATGGATGTCTGTTGCATGGAAAGCTGCTTGCTTTTTCC

               301    -    351
UN24202        --> CGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTCTGGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- ..................................................
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> CGGGCATTGCGTTTCTCATCCTCACAACGCTCAACTTCCTTCTGTGGGGT
FY441834       --> CGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTCTGGGGT
FD543213       --> CGGGTATTGCGTTTCTTATCCTCACAACGCTCAACTTCCTTCTCTGGGGT
FD535647       --> CGGGTATTGCGTTTCTGATCCTCACAACGCTCAACTTCCTTCTCTGGGGT

               351    -    401
UN24202        --> AGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- .........................TCTCTCTGTTTGTCATCCTCATCCT
FD539091       <-- ..................................................
EV572686       <-- ..................................................
FD967938       <-- ..................................................
FD971935       --> AGCCACAGTACTGGAGCTATCCCTTTCTCTCTGTTTGTCATCCTCATCCT
FY441834       --> AGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCT
FD543213       --> AGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCT
FD535647       --> AGCCACAGTACTGGAGCTATTCCTTTCTCTCTGTTTGTCATCCTCATCCT

               401    -    451
UN24202        --> CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
FD539091       <-- .....GGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
EV572686       <-- ............CATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
FD967938       <-- ..................................................
FD971935       --> CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
FY441834       --> CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
FD543213       --> CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG
FD535647       --> CCTGTGGTTCTGCATCTCGGTTCCTCTCACCCTCATCGGTGGTTACTTTG

               451    -    501
UN24202        --> GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
FD539091       <-- GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
EV572686       <-- GAGCCAGGGCTCCTCACATTGAGTTCCCTGTCCGAACCAACCAGATTCCC
FD967938       <-- ..................................................
FD971935       --> GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
FY441834       --> GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
FD543213       --> GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC
FD535647       --> GAGCCAGGGCTCCTCACATTGAGTTCCCGGTCCGAACCAACCAGATTCCC

               501    -    551
UN24202        --> AGGGAAATCCCAGCTCAGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- AGGGAAATCCCAGCTCAGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGC  Raphanus raphanistrum subsp. maritimus
FD539091       <-- AGGGAAATCCCAGCTCAGAAATACCCGTCATGGCTTCTAGTTCTTGGCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572686       <-- AGGGAAATCCCAGCTCAGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGC  Raphanus raphanistrum subsp. landra
FD967938       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971935       --> AGGGAGATCCCAGCTCAGAAATACCCGTCATGGCTTCTAGTTCTTGGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441834       --> AGGGAAATCCCAGCTCAGAAGTACCCGTCGTGGCTTCTAGTTCTTGGCGC  Raphanus sativus cv GSK3-1
FD543213       --> AGGGAAATCCCAGCTCAGAAATACCCGTCATGGCTTCTAGTTCTTGGCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535647       --> AGGGAAATCCCAGCTCAGAAATACCCGTCGTGGCTTCTAGTTCTTGGCGC  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN24202        --> TGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- TGGAACACTTCCTTTCGGAACCCTCTTCATCGAGCTGTTCTTCATCATGT
FD539091       <-- TGGTACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGT
EV572686       <-- TGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGT
FD967938       <-- ..................................................
FD971935       --> TGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGT
FY441834       --> TGGAACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTTATCATGT
FD543213       --> TGGTACACTTCCTTTCGGGACCCTCTTCATCGAGCTGTTCTTCATCATGT
FD535647       --> TGGAACACTTCCTTTCGGAACCCTCTTCATCGAGCTGTTCTTCATCATGT

               601    -    651
UN24202        --> CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT
FD539091       <-- CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT
EV572686       <-- CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTTTTCGTT
FD967938       <-- ...........................ACGTCTTCGGCTTCCTGTTCGTT
FD971935       --> CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT
FY441834       --> CCAGCATCTGGATGGGCCGTGTCTACTATGTCTTCGGCTTCCTGTTCGTT
FD543213       --> CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT
FD535647       --> CCAGCATCTGGATGGGCCGTGTCTACTACGTCTTCGGCTTCCTGTTCGTT

               651    -    701
UN24202        --> GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCTCTAGTGCTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCCCTAGTGCTGAC  Raphanus raphanistrum subsp. maritimus
FD539091       <-- GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCTCTAGTGCTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV572686       <-- GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCTTTAGTGCTGAC  Raphanus raphanistrum subsp. landra
FD967938       <-- GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCCCTAGTGCTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971935       --> GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCCCTAGTGCTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441834       --> GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCTCTAGTGCTAAC  Raphanus sativus cv GSK3-1
FD543213       --> GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCTCTAGTGCTAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535647       --> GTCATGATCCTTCTCGTTGTGGTGTGTGCTGAGGTCTCCCTAGTGCTGAC  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN24202        --> GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT
FD539091       <-- GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT
EV572686       <-- GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCCTTCT
FD967938       <-- GTACATGCACCTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCCTTCT
FD971935       --> GTACATGCACctg.....................................
FY441834       --> GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT
FD543213       --> GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT
FD535647       --> GTACATGCACTTGTGTGTGGAAGACTATAAATGGTGGTGGAAATCTTTCT

               751    -    801
UN24202        --> TTGCGTCAGGATCCGTTGCTATCTACATATTCATCTACTCCATAAACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- TTGCGTCAGGATCCGTTGCTATCTACATATTCATCTACTCCATAAACTAT
FD539091       <-- TTGCGTCAGGATCCGTTGCTATCTACATATTCATCTACTCCATAAACTAT
EV572686       <-- TTGCGTCAGGATCCGTTGCTATCTACATGTTCATCTACTCCATAAACTAT
FD967938       <-- TTGCGTCAGGATTCGTTGCTATCTACATATTCATCTACTCCATAAACTAT
FD971935       --> ..................................................
FY441834       --> TTGCGTCAGGATCCGTTGCTATCTACATATTCATCTACTCCATAAACTAT
FD543213       --> TTGCG.............................................
FD535647       --> TTGCGTCAGGATCCGTTGCTATCTACATATTCATCTACTCCATAAACTAT

               801    -    851
UN24202        --> CTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CTCGTCTTCGACCTCAAGAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
FD539091       <-- CTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
EV572686       <-- CTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
FD967938       <-- CTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
FD971935       --> ..................................................
FY441834       --> CTCGTCTTCGACCTCAAAAACTTGAGTGGACCCGTTTCAGCGACTCTTTA
FD543213       --> ..................................................
FD535647       --> CTCGTCTTCGACCTCAAGAACTTGAGTGGACCCGTTTCAGCGACTCTTTA

               851    -    901
UN24202        --> TCTGGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- TCTGGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA
FD539091       <-- TCTTGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA
EV572686       <-- TCTGGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA
FD967938       <-- TCTGGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA
FD971935       --> ..................................................
FY441834       --> TCTGGGCTACTCCCTGTTCATGGTCCTGGCTATCATGCT...........
FD543213       --> ..................................................
FD535647       --> TCTGGGCTACTCTCTGTTCATGGTCCTGGCTATCATGCTCGCCACAGGTA

               901    -    951
UN24202        --> CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG
FD539091       <-- CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG
EV572686       <-- CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG
FD967938       <-- CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> CTGTCGGTTTCCTCTCTTCCTTCTGGTTCGTGCACTACTTGTTCTCTTCG

               951    -   1001
UN24202        --> GTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATC
FD539091       <-- GTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGATC
EV572686       <-- GTGAAACTTGACTGAGGATCGGAGCCGGCGGATTACGGTTCAGAATGTTC
FD967938       <-- GTGAAACTTGACTGAGGATCGGAGCCGGAGGATTACGGTTCAGAATGGTC
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> -TGAAACTTGACTGAG-ATCGGAGCCGagga...................

               1001   -   1051
UN24202        --> GTTTAAAGTTTTGAAGAAGAGAGTAATGTCGTTTAAGCAAA-GTCCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GTTTAAAGTTTTGAAGAAGAGAGTAATGTCGTTTAAGCAAA-GTCCATCT
FD539091       <-- GTTTAAAGTTTTGAAGAAGAGAGTAATGTCGTTTAAGCAAAAGTCCATCT
EV572686       <-- GTTTAAAGTTTTGAAGAAGAGAGTAATGTCGTTTAAGCAAA-GTCCATCT
FD967938       <-- GTTTAAAGTTTTGAAGAAGAGAGTAATGTCGTTTAAGCAAA-GTCCATCT
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> ..................................................

               1051   -   1101
UN24202        --> CATTGCTCCAAGTGTAAGGGTTCAATATTTTTTT-CTTTTTAATGTCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CATTGCTCCAAGTGTAAGGGTTCAATATTTTTTT-CTTTTTAATGTCAGT
FD539091       <-- CATTGCTCCAAGTGTAAGGGTTCAATATTTTTTT-CTTTTTAATGTCAGT
EV572686       <-- CATTGCTCCAAGTGTAAGGGTTCAATATTTTTTTTCTTTTTAATGTCAGT
FD967938       <-- CATTGCTCCAAGTGTAAGGGTTCAATATTTTTTT-CTTTTTAATGTCAGT
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> ..................................................

               1101   -   1151
UN24202        --> CTCAAGGATTTGTTCATGTTTCTTGTTTT-CATCTTGTTACATCATTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- CTCAAGGATTTGTTCATGTTTCTTGTTTT-CATCTTGTTACATCATTATG
FD539091       <-- CCCAAGGATTTGTTCATGTTTCTTGTTTT-CATCTTGTTACATCATTATG
EV572686       <-- CTCAAGGATTTGTTCATGTTTCTTGTTTT-CATCTTGTTACATCATTATG
FD967938       <-- CTCAAGGATTTGTTCATGTTTCTTGTTTTTCATCTTGTTACATCATTATG
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> ..................................................

               1151   -   1201
UN24202        --> GGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATATTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD531265       <-- GGAATGCATCTGAACTTAG...............................
FD539091       <-- GGAATGCATCTGAACTTAGGAAATGTTTATTTTTAGTTCTATATTAAAAA
EV572686       <-- GGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATATTAAAAA
FD967938       <-- GGAATGCATCTGAACTTAGAAAATGTTTATTTTTAGTTCTATA.......
FD971935       --> ..................................................
FY441834       --> ..................................................
FD543213       --> ..................................................
FD535647       --> ..................................................

               1201   -   1251
UN24202        --> TGGATTTTG
                   ~~~~~~~~~
FD531265       <-- .........
FD539091       <-- TGGATTTTG
EV572686       <-- TGGATTTTG
FD967938       <-- .........
FD971935       --> .........
FY441834       --> .........
FD543213       --> .........
FD535647       --> .........