1      -     51
UN24377        --> GGGAGCCCATTTGATCTCAATTACATCGGGCGCGCGACGGAGGAGATCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- ..................................................
FD975862       <-- ..................................................
FD959122       <-- ..................................................
FD535163       --> GGGAGCCCATTTGATCTCAATTACATCGGGCGCGCGACGGAGGAGATCAG
EY929390       --> ................ggAATTACATCGGGCGCGCGACGGAGGAGATCAG
FD979891       --> ................ggAATTACATCGGGCGCGCGACGGAGGAGATCAG
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ................................................gg
FD988073       --> ..................................................

               51     -    101
UN24377        --> AGAGCGACGACGTGGGG-AGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- gGAGCGACGACGGGGGGGAGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
EY925837       <-- ..................................................
FD975862       <-- ..................................................
FD959122       <-- ..................................................
FD535163       --> AGAGCGACGACGTGGGG-AGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
EY929390       --> AGAGCGACGACGTGGGG-AGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
FD979891       --> AGAGCGACGACGTGGGG-AGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
EV552599       --> gGAGCGACGACGGGGGGGAGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
FD962613       --> gGAGCGACGACGTGGGG-AGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
FD540538       --> acAGCGACGACGGGGGGGAGAGAGAAAATGCCGGTGAGAGTTGTGGAGAG
FD988073       --> ..................................................

               101    -    151
UN24377        --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
EY925837       <-- ..................................................
FD975862       <-- ..................................................
FD959122       <-- ..................................................
FD535163       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
EY929390       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
FD979891       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
EV552599       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
FD962613       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCCGGGAATCGATCACCAC
FD540538       --> CAACGCGCCTGCTCAGGTTTCAGGGAGTGATCCTGGGAATCGATCACCAC
FD988073       --> ..................................................

               151    -    201
UN24377        --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCATTTTCTGGTACGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCGTTTTTTGGTACGCAG
EY925837       <-- ..............................................GCAG
FD975862       <-- ..................................................
FD959122       <-- ..................................................
FD535163       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCATTTTCTGGTACGCAG
EY929390       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCGTTTTCTGGTACGCAG
FD979891       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCATTTTCTGGTACGCAG
EV552599       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCGTTTTCTGGTACGCAG
FD962613       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCATTTTCTGGTACGCAG
FD540538       --> TTCCGCCTAGCTCACTTCTTGCCGCCGGCCAGGCATTTTCTGGTACGCAG
FD988073       --> ..................................................

               201    -    251
UN24377        --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
EY925837       <-- AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
FD975862       <-- ..................................................
FD959122       <-- ..................................................
FD535163       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
EY929390       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
FD979891       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
EV552599       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
FD962613       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
FD540538       --> AATGTCTCTAATCAACAGAAGGAGGAAGCTTGGAGAGTCAACGTCCAGAT
FD988073       --> .............................ggaGAGAGTCAACGTCCAGAT

               251    -    301
UN24377        --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
EY925837       <-- ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
FD975862       <-- ......................GGCTATCTTTGTGGCACTATGGAAGCTC
FD959122       <-- ..................................................
FD535163       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
EY929390       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
FD979891       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
EV552599       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
FD962613       --> ACAGGGTGTTGACCTTGAACATTGCTATCTTTGTGGCACTATGGAAGCTC
FD540538       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC
FD988073       --> ACAGGGTGTTGACCTTGAACATGGCTATCTTTGTGGCACTATGGAAGCTC

               301    -    351
UN24377        --> TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTTTGGGAAGGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY925837       <-- TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTCTGGGAAGGGGAA  Raphanus sativus var. oleiformis
FD975862       <-- TAAACGTTCCCATGGCAGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD959122       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD535163       --> TAAACGTTCCCATGGCAGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. maritimus
EY929390       --> TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTCTGGGAAGGGGAA  Raphanus sativus var. oleiformis
FD979891       --> TAAACGTTCCCATGGCAGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV552599       --> TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962613       --> TAAACGTTCCCATGGCAGACACTCCTGTCATAACATTTTGGGAAGGAGGG  Raphanus raphanistrum subsp. maritimus
FD540538       --> TAAATGTTCCCATGGCTGACACTCCTGTCATAACATTCTGGGAAGGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD988073       --> TAAACGTTCCCATGGCTGACACTCCTGTCATAACATTTTGGGAAGGAGAG  Raphanus raphanistrum subsp. landra

               351    -    401
UN24377        --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
EY925837       <-- ATCGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD975862       <-- ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD959122       <-- ..................................................
FD535163       --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
EY929390       --> ATCGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD979891       --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
EV552599       --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD962613       --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD540538       --> ATCGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC
FD988073       --> ATTGTTGATGGAAAGAACTACACTTTCTACACCGGAAAATGGGAAGCCAC

               401    -    451
UN24377        --> GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
EY925837       <-- GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD975862       <-- GAGGGTAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD959122       <-- ..................................................
FD535163       --> GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
EY929390       --> GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD979891       --> GAGGGTAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
EV552599       --> GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD962613       --> GAGAGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD540538       --> GAGGGAAGACGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC
FD988073       --> GAGGGAAGATGATATGAGACATTGGTCAAAGTTCCCATCTTTTGCACCTC

               451    -    501
UN24377        --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
EY925837       <-- TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
FD975862       <-- TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
FD959122       <-- ..................................................
FD535163       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
EY929390       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
FD979891       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
EV552599       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGAACTTACCAAT
FD962613       --> TTCAGGGTCAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
FD540538       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT
FD988073       --> TTCAGGGACAAGTTGAATCTGACGGTGGGAGGCAATTGGATCTTACCAAT

               501    -    551
UN24377        --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
EY925837       <-- TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
FD975862       <-- TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
FD959122       <-- ..................................................
FD535163       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
EY929390       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
FD979891       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
EV552599       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
FD962613       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG
FD540538       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAACGTTGG
FD988073       --> TACCCTTACATATTTATGAGATGGAAAGAGCAGTACTTTGTAAATGTTGG

               551    -    601
UN24377        --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
EY925837       <-- CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
FD975862       <-- CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
FD959122       <-- ..................................................
FD535163       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
EY929390       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
FD979891       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
EV552599       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
FD962613       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT
FD540538       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTTTGCTTCTCCT
FD988073       --> CACAGATTGTGGACTAACAATAGCTGGATTCTACTACGTATGCTTCTCCT

               601    -    651
UN24377        --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
EY925837       <-- GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
FD975862       <-- GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
FD959122       <-- ..................................................
FD535163       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
EY929390       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
FD979891       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
EV552599       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
FD962613       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG
FD540538       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCC
FD988073       --> GCAGCGACGGATCCATCAGCGGTTTCTACTATGATCCTAACAGCAGTCCG

               651    -    701
UN24377        --> TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
EY925837       <-- TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
FD975862       <-- TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
FD959122       <-- ..................................................
FD535163       --> TTTCAGAAGCTGGAGCTGAAA-CAGTTAACGAAG-AAGATCTGGTTTCAG
EY929390       --> TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAAGAAGATCTGGTTTCAG
FD979891       --> TTTCAGAAGCTGGAGCTGAAA-CAGTTAA.....................
EV552599       --> TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
FD962613       --> TTTCAGAAGCTGGAGCTGAAA-CAGTTAAC....................
FD540538       --> TTTCAGAAGCTGGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG
FD988073       --> TTTCAGAAGCTAGAGCTGAAAACAGTTAACGAAGGAAGATCTGGTTTCAG

               701    -    751
UN24377        --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAGAAAAAAAAA-G
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- CTTCTCTTCTTACGAGTTGCAATGATCATAGCC.................
EY925837       <-- CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAGAAAAAAAA--G
FD975862       <-- CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAGAAAAAAAAA-G
FD959122       <-- ..TCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAGAAAAAAAAA-G
FD535163       --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAA-GAAAAA......
EY929390       --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAA-GAAAAAAA---G
FD979891       --> ..................................................
EV552599       --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCC.................
FD962613       --> ..................................................
FD540538       --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAAAAA........
FD988073       --> CTTCTCTTCTTACGAGTTGCAATGATCATAGCCAAAAAGAAAAAAAAAAG

               751    -    801
UN24377        --> CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCCGGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCCGGTAA
FD975862       <-- CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCCGGTAA
FD959122       <-- CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCCGGTAA
FD535163       --> ..................................................
EY929390       --> CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCC.....
FD979891       --> ..................................................
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ..................................................
FD988073       --> CAGCAGACAGTGCTCCCTCGTGGGCACATGGGAGGCACGTGATCCGGTAA

               801    -    851
UN24377        --> CACTGTGATAGTAGCACGTAGCAGACCGGACCAGTAAAAACTAAAATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- CACTGTGATAGTAGCACGTAGCAGACTGGACCAGTAAAAACTAAAATACT
FD975862       <-- CACTGTGATAGTAGCACGTAGCAGACCGGACCAGTAAAAACTAAAATACT
FD959122       <-- CACTGTGATAGTAGCACGTAGCAGACCGGACCAGTAAAAACTAAAATACT
FD535163       --> ..................................................
EY929390       --> ..................................................
FD979891       --> ..................................................
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ..................................................
FD988073       --> CACTGTGATAGTAGCACGTAGCAGACCGGACCAGTAAAAACTAAAATACT

               851    -    901
UN24377        --> ATTTTGTCATCATGGTACGAGACTACTAGCTAAACATTTCAAGACATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- ATTTTGTCATCATGGTATGAGACTACTAGCTAAACATTTCAAGACATTAC
FD975862       <-- ATTTTGTCATCATTGTACGAGACTACTATCTAAACATTTCAAGACATTAC
FD959122       <-- ATTTTGTCATCATGGTACGAGACTACTAGCTAAACATTTCAAGACATTAC
FD535163       --> ..................................................
EY929390       --> ..................................................
FD979891       --> ..................................................
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ..................................................
FD988073       --> ATTTTGTCATCATGGTACGAGACTACTAGCTAAACATTTCAAGACATTAC

               901    -    951
UN24377        --> CACATTTTCCAAAATAATGATATTATCCAAAAGTAAGATTTTTATTCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- CACATTTTCCAAAATAATGATATTATCCAAA...................
FD975862       <-- CACATTTTCCAAAATAATGATATTATCCAAAAGTAAGATTTTTATTCTTA
FD959122       <-- CACATTTTCCAAAATAATGATATTATCCAAAAGTAAGATTTTTATTCTTA
FD535163       --> ..................................................
EY929390       --> ..................................................
FD979891       --> ..................................................
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ..................................................
FD988073       --> CACATTTTCCAAA-TAATGACATTATCCAAAAGTAAGATT..........

               951    -   1001
UN24377        --> GAATGTTACAGAAGAAAAAAGCAAGTTGTGGATGTTGGACAAAGAAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................................................
EY925837       <-- ..................................................
FD975862       <-- GAATGTTACAGAAGAAAAAAGCAAGTTGTGGATGTTGGACAAAGAAAGCA
FD959122       <-- GAATGTTACAGAgt....................................
FD535163       --> ..................................................
EY929390       --> ..................................................
FD979891       --> ..................................................
EV552599       --> ..................................................
FD962613       --> ..................................................
FD540538       --> ..................................................
FD988073       --> ..................................................

               1001   -   1051
UN24377        --> ATTAAAGCAAGTTGTTGT
                   ~~~~~~~~~~~~~~~~~~
EV547485       <-- ..................
EY925837       <-- ..................
FD975862       <-- ATTAAAGCAAGTTGTTGT
FD959122       <-- ..................
FD535163       --> ..................
EY929390       --> ..................
FD979891       --> ..................
EV552599       --> ..................
FD962613       --> ..................
FD540538       --> ..................
FD988073       --> ..................