Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN24496

               1      -     51
UN24496        --> TGATAAACGAAGAAAGACTCAGGCTATGTTGACATGGAACATGACGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- TGATAAACGAAGAAAGACTCAGGCTATGTTGACATGGAACATGACGTGCA
FY440046       <-- ...............................ACATGGAACATGACGTGCA
EX892999       <-- ..................................................
EY910652       <-- ..................................................
EY909249       <-- ..................................................
FY442522       --> ...................CAGGCTATGTTGACATGGAACATGACGTGCA
EY914650       --> ..................................................

               51     -    101
UN24496        --> CGTATTCACAGTTTCTAGCTCAGAAAACTCCCACTTGTTGTGTTTCACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CGTATTCACAGTTTCTAGCTGAGAGAACTCCCACTTGTTGTGTCTCACTC
FY440046       <-- CGTATTCACAGTTTCTAGCTCAGAAAACTCCCACTTGTTGTGTTTCACTC
EX892999       <-- ........................................TGTCTCACTC
EY910652       <-- ..................................................
EY909249       <-- ..................................................
FY442522       --> CGTATTCACAGTTTCTAGCTCAGAAAACTCCCACTTGTTGTGTTTCACTC
EY914650       --> ...............................................gTC

               101    -    151
UN24496        --> TCGGCTTTCTACAATAAGACTATCGTACCATGCCCAACATGTTCGTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- TCGGCTTTCTACAATAAGACTATCGTACCATGCCCAACATGTTCGTGTGG
FY440046       <-- TCGGCTTTCTACAATAAGACTATCGTACCATGCCCAACATGTTCGTGTGG
EX892999       <-- TCGGCTTTCTACAATAAGACTATCGTACCATGCCCAACATGTTCGTGTGG
EY910652       <-- ..................................................
EY909249       <-- ..................................................
FY442522       --> TCGGCTTTCTACAATAAGACTATCGTACCATGCCCAACATGTTCGTGTGG
EY914650       --> TCGGCTTTCTACAATAAGACTATCGTACCATGCCCTACATGTTCGTGTGG

               151    -    201
UN24496        --> ATGTCAAAACGGTACATGTGTCGACAACCCGAAAATAGCTTCGGTGGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- ATGTCAAAACGGTACATGTGTCGACAACCCGAAAATAGCTTCGGTGGTAT
FY440046       <-- ATGTCAAAACGGTACATGTGTCGACAACCCGAAAATAGCTTCGGTGGTAT
EX892999       <-- ATGTCAAAACGGTACATGTGTCGACAACCCGAAAATAGCTTCGGTGGTAT
EY910652       <-- ........................CAACCCGAAAATAGCTTCGGTGGTAT
EY909249       <-- ..................................................
FY442522       --> ATGTCAAAACGGTACATGTGTCGACAACCCGAAAATAGCTTCGGTGGTAT
EY914650       --> ATGTCAAAACGGTACATGTTTCGACAACCCGAAAATAGCTTCGGTGGTAT

               201    -    251
UN24496        --> CAGCTGTCTCAGGGAAGAACAACCTCCAGCCGCTCTTGCAATGTACGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CAGCTGTCTCAGGGAAGAACAACCTCCAGCCGCTCTTGCAATGTACGCAG
FY440046       <-- CAGCTGTCTCAGGGAAGAACAACCTCCAGCCACTCTTGCAATGTACGCAG
EX892999       <-- CAGCTGTCTCAGGGAAGAACAACCTCCAGCCGTTCTTGCAATGCACGCAG
EY910652       <-- CAGCTGTCTCAGGGAAGAACAACCTCCAGCCGCTC--TCAATGTACGCAG
EY909249       <-- ...........GGGAAGAACAACCTCCAGCCGCTCTTGCAATGTACGCAG
FY442522       --> CAGCTGTCTCAGGGAAGAACAACCTCCAGCCACTCTTGCAATGTACGCAG
EY914650       --> CAGCTGTCTCAGGGAAGAACAACCTCCAGCCGCTCT--CAATGTACGCAG

               251    -    301
UN24496        --> CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
FY440046       <-- CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
EX892999       <-- CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
EY910652       <-- CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
EY909249       <-- CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
FY442522       --> CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA
EY914650       --> CATATGTGTCCCATCAGAGTTCATTGGCATGTGAAAACTAACTACAAAGA

               301    -    351
UN24496        --> GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- GTACTGGCGTGTGAAGGTCACGATCACAAACTTCAACTACAATATGAATT
FY440046       <-- GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT
EX892999       <-- GTACTGGCGTGTGAAGGTCACGATCACAAACTTCAACTACAATATGAATT
EY910652       <-- GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT
EY909249       <-- GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT
FY442522       --> GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT
EY914650       --> GTACTGGCGTGTGAAGGTCACAATCACAAACTTCAACTACAATATGAATT

               351    -    401
UN24496        --> ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- ACTCGCAGTGGAATTTGGTTGTTCAGCATCCTAACTTCGACAATATCACA
FY440046       <-- ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT
EX892999       <-- ACTCGCAGTGGAATTTGGTTGTTCAGCATCCTAACTTCGACAATATCACT
EY910652       <-- ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT
EY909249       <-- ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT
FY442522       --> ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT
EY914650       --> ACTCGCAGTGGAATTTGGTTGTTCAGCATCCCAACTTCGACAATATCACT

               401    -    451
UN24496        --> CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
FY440046       <-- CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
EX892999       <-- CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
EY910652       <-- CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
EY909249       <-- CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
FY442522       --> CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA
EY914650       --> CAGCTTTTCAGCTTTAACTACAAACCTCTTAGTCCTTACGCTGGCATAAA

               451    -    501
UN24496        --> TGACACGGCCATGTTGTGGGGGATCAAGTTCTATAACGATTTTTTGAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- TGACACGGCCATGTTGTGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus sativus cv Early Scarlet Globe
FY440046       <-- TGACACGGCCATGTTGTGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus sativus cv GSK3-1
EX892999       <-- TGACACGGCCATGTTGTGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus sativus var. oleiformis
EY910652       <-- TGACACGGCCATGCTATGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909249       <-- TGACACGGCCATGCTATGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY442522       --> TGACACGGCCATGTTGTGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus sativus cv GSK3-1
EY914650       --> TGACACGGCCATGCTATGGGGGATCAAGTTCTATAACGATTTTTTGAGCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN24496        --> AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTTTCTTCCGAAAGGAC
FY440046       <-- AAGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
EX892999       <-- AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
EY910652       <-- AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
EY909249       <-- AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
FY442522       --> AAGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC
EY914650       --> AGGCCGGTCCAGTAGGCAACGTACAGTCAGAACTTCTCTTCCGAAAGGAC

               551    -    601
UN24496        --> CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
FY440046       <-- CCGTCATCGTTCACGTTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
EX892999       <-- CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
EY910652       <-- CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
EY909249       <-- CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
FY442522       --> CCGTCATCGTTCACGTTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA
EY914650       --> CCGTCATCGTTCACGCTCGAGAAAGGATGGGCGTTTCCAAGACGCATTTA

               601    -    651
UN24496        --> CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
FY440046       <-- CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
EX892999       <-- CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
EY910652       <-- CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
EY909249       <-- CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
FY442522       --> CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC
EY914650       --> CTTCAACGGAGATAACTGCGTTATGCCACCTCCAGACTCGTATCCATGGC

               651    -    701
UN24496        --> TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
FY440046       <-- TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
EX892999       <-- TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
EY910652       <-- TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
EY909249       <-- TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
FY442522       --> TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC
EY914650       --> TTCCTAACGCTGCTTCAAACCTTGCAACTTCGTCACTCATCATACTTATC

               701    -    751
UN24496        --> ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT
FY440046       <-- ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAA
EX892999       <-- ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT
EY910652       <-- ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT
EY909249       <-- ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT
FY442522       --> ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAA
EY914650       --> ATTAATTTCTTCTCTGTTTTGATTCTTATGTAAAGTGATCACGTTGAAAT

               751    -    801
UN24496        --> ATTGTGCTTTTGACCCGGTTCATACTTTTGGGATCAGACTGGATCCTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- ATTGTGCTTTTGACCCGGTTCATACTTTTGGGATCAGACTGGATCCTCAT
FY440046       <-- ATTGTGCTTTTGACCCGATTCATACTTTTGGGATCAGACTGGATCCTCAT
EX892999       <-- ATTGTGCTTTTGACCCGGTTCATACTTTTGGGATCAGACTGGATCCTCAT
EY910652       <-- ATTGTGCTTTTGACCCGGTTCATACTTTTGGGATCAGACTGGATCCTCAT
EY909249       <-- ATTGTGCTTTTGACCCGGTTCATACTTTTGGGATCAGACTGGATCCTCAT
FY442522       --> ATTGTGCTTTTGACCCGATTCATACTTTTGGGATCAGACTGGATCCTCAT
EY914650       --> ATTGTGCTTTTGA.....................................

               801    -    851
UN24496        --> TGGCTAATATATAAAAATGGCATGCGGCACTCTGTTCATG..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD943116       <-- TGGCTAATATATAAAAATGGCATGCGGCACTCTGTTCATGgc
FY440046       <-- TGGCTAAT..................................
EX892999       <-- TGGCTAATATATAAAAATGGCATGCGGCACTCTGTTCATGac
EY910652       <-- TGGCTAATATATAAAAATGGCATGTGGCACTCTGTTCATGgc
EY909249       <-- TGGCTAATATATAAAAATGGCATGCGGC..............
FY442522       --> TGGCTAATATATAAAAATGGCATGCGGC..............
EY914650       --> ..........................................