1      -     51
UN25008        --> CTGAGCCGAGCTCGTGAATTGTAACTCATTTTGACACCATCGTAACTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ...............................................ATA
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> CTGAGCCGAGCTCGTGAATTGTAACTCATTTTAACACCATCGTAACTATA
EY928537       --> ..........CTCGTAAATTATAACTCATTTTGACACCATCGTAACTATA
FD552447       --> .........................................tttttTATA
EW728200       --> ...............................................ATA
EY928370       --> ...............................................ATA

               51     -    101
UN25008        --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- CAACAAACACATTTATTCATTCGTATTTGGTAACCACAAATACATCAATA
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAATA
EY928537       --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAGTA
FD552447       --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAATA
EW728200       --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAATA
EY928370       --> CAACAAACACATTTATTCATTTGTATTTGGTAACCACAAATACATCAGTA

               101    -    151
UN25008        --> TATATATATAACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- TATATATATAACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus sativus cv Early Scarlet Globe
EV567704       <-- ................................................GG  Raphanus raphanistrum subsp. landra
FD556084       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW723182       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD967490       --> TATATATATAACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY928537       --> TATATATA--ACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus sativus var. oleiformis
FD552447       --> TATATATA--ACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus raphanistrum subsp. landra
EW728200       --> TATATATATAACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus sativus cv Early Scarlet Globe
EY928370       --> TATATATA--ACTGATACAGCAAAAGGTTATCGGTTCCGAACCCCGTCGG  Raphanus sativus var. oleiformis

               151    -    201
UN25008        --> GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
EV567704       <-- GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
EY928537       --> GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
FD552447       --> GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
EW728200       --> GGGTAAGTACCCCGTAAGACACCGCAGAAGAAGCTTGAGTTTCTTGATCC
EY928370       --> GGGTAAGTACCCCGTAAGACACCGCAAAAGAAGCTTGAGTTTCTTGATCC

               201    -    251
UN25008        --> AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
EV567704       <-- AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
EY928537       --> AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
FD552447       --> AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT
EW728200       --> AGTTTAACACGGTTTGGATTCTTACCGCAAGGGATCTGAAACATAGTCTT
EY928370       --> AGTTTAACACGGTTTGGATTCTTACCACAAGGGATCTGAAACATAGTCTT

               251    -    301
UN25008        --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
EV567704       <-- GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
EY928537       --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
FD552447       --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
EW728200       --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG
EY928370       --> GAGATCAGGACAAGTCTGCCTCCGCATGAAGAACTCAGCACATTCCGGTG

               301    -    351
UN25008        --> CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- CAGTTTTCTGGTTAGGAA................................
EV567704       <-- CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA
EY928537       --> CAGTTTTCTGGTTAGGAAGATCAAGTATAAAATTCATACGAACGTCAAGA
FD552447       --> CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA
EW728200       --> CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA
EY928370       --> CAGTTTTCTGGTTAGGAAGATCAAGTATACAATTCATACGAACGTCAAGA

               351    -    401
UN25008        --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ATATGATTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
FD556084       <-- ..................................................
EW723182       <-- ..................................................
FD967490       --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
EY928537       --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
FD552447       --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
EW728200       --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA
EY928370       --> ATATGGTTCTTGATGAGTTCTCTACATTTTGGACCGGCCTGAGTGAAGTA

               401    -    451
UN25008        --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
FD556084       <-- ...............AAAGTTTT-GAGACTAGGAAGCTCGCATACAATCT
EW723182       <-- ..................................................
FD967490       --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
EY928537       --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
FD552447       --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
EW728200       --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT
EY928370       --> ATTATAGGAGAGAGAAAAGTTTTTGAGACTAGGAAGCTCGCATACAATCT

               451    -    501
UN25008        --> CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
FD556084       <-- CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
EW723182       <-- ..................................................
FD967490       --> CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
EY928537       --> CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATA
FD552447       --> CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
EW728200       --> CTGGTATGGTTCCATAGAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC
EY928370       --> CTGGTATGGTTCCATAAAATTTGTTTCTGGCTAAGTTGAGTTGTTCCATC

               501    -    551
UN25008        --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
FD556084       <-- TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
EW723182       <-- ................AAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
FD967490       --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
EY928537       --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
FD552447       --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
EW728200       --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA
EY928370       --> TTGGCTAAGCAACCGAAAGAGTATGGTATTGGACCGGTTAGCTGGTTAAA

               551    -    601
UN25008        --> CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
FD556084       <-- CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
EW723182       <-- CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
FD967490       --> CCCGACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
EY928537       --> CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
FD552447       --> CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
EW728200       --> CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA
EY928370       --> CCCAACATCGAAAACGGTGGCTCGGTTTAGCTTTCCAATTTGGTATGGTA

               601    -    651
UN25008        --> AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
FD556084       <-- AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
EW723182       <-- AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
FD967490       --> AGCACCCTGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
EY928537       --> AGCACCCGGTTAGAGTGTTATTCAAGAAA-GGACTTCTTGTAGGTTCTTG
FD552447       --> AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
EW728200       --> AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG
EY928370       --> AGCACCCGGTTAGAGTGTTATTCAAGAAAAGGACTTCTTGTAGGTTCTTG

               651    -    701
UN25008        --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
FD556084       <-- ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
EW723182       <-- ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
FD967490       --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
EY928537       --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
FD552447       --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
EW728200       --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA
EY928370       --> ATGTTGCCTATGCTGGCGGGAATTTTACCCGTGAACCTGTTGTTGGCGAA

               701    -    751
UN25008        --> TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
FD556084       <-- AGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
EW723182       <-- TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
FD967490       --> TGTGAGATAAAGAGCAGTGATGGA..........................
EY928537       --> TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
FD552447       --> AGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
EW728200       --> TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCTGAA
EY928370       --> TGTGAGATAAAGAGCAGTGATGGAGCCAAGATTGGATGGAAGTGTCT...

               751    -    801
UN25008        --> CAAGATTGTTGTTGTTGATGAACAAGACGTCAAGATCAAGATTAAAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- CAAGATTGTTGTTGTTGATGAACAAGACGTCAAGATCAAGATTAAAGACC
FD556084       <-- CAAGATTGTTGTTGTTGATGAACAAGACGTCAAGATCAAGATTAAAGACC
EW723182       <-- CAAGATTGTTGTTGTTGATGAACAAGACGTCAAGATCAAGATTAAAGACC
FD967490       --> ..................................................
EY928537       --> CAAGATTGTTGTTGTTGATGAACA-GACGTCAAGATCA-GATTAAAGACC
FD552447       --> CAAG..............................................
EW728200       --> CAAGATTGTTGTTGTTGATGAACAAGACGTCAAGATCAAGATTAAAGACC
EY928370       --> ..................................................

               801    -    851
UN25008        --> TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGT
FD556084       <-- TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGA
EW723182       <-- TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGT
FD967490       --> ..................................................
EY928537       --> TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAA....
FD552447       --> ..................................................
EW728200       --> TGAGGAGGAACACAGCCTGAGAAAGTATTGAACCTGAGATCAAGAAACGT
EY928370       --> ..................................................

               851    -    901
UN25008        --> GAGATTTTTGGCTTTCAAGACAGAAGCTGGGAAGTCTCCGGTGAGTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- GAGATCTTTGGCTTTCAAGACAGAAGCTGGGAAGTCTCCGGTGAGTTTGT
FD556084       <-- GAGATCTTTGGCTTTCAAGACAGAAGCTGGGAAGTCTCCGGTGAGTTTGT
EW723182       <-- GAGATTTTTGGCTTTCAAGACAGAAGCTGGGAAGTCTCCGGTGAGTTTGT
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> GAGATTTTTGGCTTTCAAGACAGAAGCTGGGAAGTC..............
EY928370       --> ..................................................

               901    -    951
UN25008        --> TGTTGCTTAGGTCGAGCTCGTATAAGTATTTTAAGCTGCTGACTTCAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- TGTc..............................................
FD556084       <-- TGTTGCTTAGGTCGAGCTCGTATAAGTATTTTAAGCTGCTGACTTCAGGC
EW723182       <-- TGTTGCTTAGGTCGAGCTCGTATAAGTATTTTAAGCTGCTGACTTCAGGC
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               951    -   1001
UN25008        --> ACAGAGCCTAAGAAGTTGTTGGAGTTTGCGTGAAAGATCGTGACTGTGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- ACAGAGCCTAAGAAGTTGTTGGAGTTCGCGTGAAAGATCGTGACTGTGTC
EW723182       <-- ACAGAGCCTAAGAAGTTGTTGGAGTTTGCGTGAAAGATCGTGACTGTGTC
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1001   -   1051
UN25008        --> TAGCTTGTCGAGGAAGTTATGTAACACGAGTTTATCGCCAGCAAAGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- TAGCTTGTCGAGGAAGTTATGTAACACGAGTTTATCGCCACCAAACATAT
EW723182       <-- TAGCTTGTCGAGGAAGTCATGTAACACGAGTTTATCGCCAGCAAAGTTAT
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1051   -   1101
UN25008        --> AACCGTTAAACTGGATGCTCGCGAGTGCCTTATTAGATGTATTCGGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- AACCGTTAAACTGGATGCTCGCc...........................
EW723182       <-- AACCGTTAAACTGAATGCTCGCGAGTGCCTTATTAGATGTATTCGGGAAT
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1101   -   1151
UN25008        --> ATTGCGCATTCAAGTCCGAGGTATTTGTACTTGTTGCAAATGTCGGTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- ATTGCGCATTCAAGTCCGAGGTATTTGTACTTGTTGCAAATGTCGGTGCC
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1151   -   1201
UN25008        --> ATTCCAAGTATCAAGAATACGCTTTGGATCCTCTGTCACTAGTTTCTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- ATTCCAAGTATCAAGAATACGCTTTGGATCCTCTGTCACTAGTTTCTGAA
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1201   -   1251
UN25008        --> AAGCTTTGAGGACTGGGTACACTTTCTCTAGTAGTGGGCTCTCAAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- AAGCTTTGAGGACTGGGTACACTTTCTCTAGTAGTGGGCTCTCAAAGCCA
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................

               1251   -   1301
UN25008        --> AAACGCGGCAACGGTGGCTGCCCCGGCGGCTTAGGCGGAGATTTACGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW724667       <-- ..................................................
EV567704       <-- ..................................................
FD556084       <-- ..................................................
EW723182       <-- AAACGCGGCAACGGTGGCTGCCCCGGCGGCTTAGGCGGAGATTTACGTTC
FD967490       --> ..................................................
EY928537       --> ..................................................
FD552447       --> ..................................................
EW728200       --> ..................................................
EY928370       --> ..................................................