1      -     51
UN25119        --> CCGTTTTTAAAAAAGTTTTTCCATTTCTAATTTTTCAAAATACATTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- .............................................TAATT
EX765375       <-- ..................................................
FD982111       <-- ..................................................
EY905776       <-- ..................................................
EY923040       <-- ..................................................
FD972989       <-- ..................................................
EX746340       <-- ..................................................
EY923126       <-- ..................................................
FD541503       <-- ..................................................
EX756998       <-- ..................................................
FD977738       --> CCGTTTTTAAAAAAGTTTTTCCATTTCTAATTTTTCAAAATACATTAATT
EX769168       --> ....................gCATTTCTAATTTTTCAAAATACATTAATT
EY902127       --> ........................TTCTAATTTTTCAAAATACATTAATT
EY918892       --> ..............ggagaagaagtgagtATTTTTCAAAATACATTAATT
EY918958       --> ..............ggagaagaagtgagtATTTTTCAAAATACATTAATT
EX760686       --> ...................................CAAAATACATTAATT
FD530639       --> ...................................CAAAATACATTAATT
FD968769       --> ..................................cCAAAATACATTAAAT
EV542954       --> ...........................................gTTAATT
FD537774       --> ..................................................

               51     -    101
UN25119        --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EX765375       <-- .AAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
FD982111       <-- ..................................................
EY905776       <-- ..................................................
EY923040       <-- ..................................................
FD972989       <-- ..................................................
EX746340       <-- ..................................................
EY923126       <-- ..................................................
FD541503       <-- ..................................................
EX756998       <-- ..................................................
FD977738       --> TAAAATATACACTAATCCTATTTAAGCGTGACAAAATCACACAACTCTCA
EX769168       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EY902127       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EY918892       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EY918958       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EX760686       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
FD530639       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
FD968769       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
EV542954       --> TAAAATATACACTAATCTTATTTAAGCGTGACAAAATCACACAACTCTCA
FD537774       --> ...................acTTAAGCGTGACAAAATCACACAACTCTCA

               101    -    151
UN25119        --> AGTAACAAGCATCAAAACCATACACAAAATATAGCTTTTGCCATCTAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- AGTAACAAGCATCAAAACCATAC---ACGCATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765375       <-- AGTAACAAGCATCAAAACCATACACAAAATATAGCTTT-GCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982111       <-- ....ACAAGCATCAAAACCATACACAAAATATAGCTTT-GCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905776       <-- .........................................CATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923040       <-- .........................................CATCTAATT  Raphanus raphanistrum subsp. landra
FD972989       <-- ..........................................ATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746340       <-- .................................................T  Raphanus raphanistrum subsp. maritimus
EY923126       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD541503       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756998       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977738       --> AGTAACAAGCATCAAAACCATACACAAAATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769168       --> AGTAACAAGCATCAAAACCATACACAAAATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902127       --> AGTAACAAGCATCAAAACCATACACAAAATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918892       --> AGTAACAAGCATCAAAACCATACACAATATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. landra
EY918958       --> AGTAACAAGCATCAAAACCATACACAATATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. landra
EX760686       --> AGTAACAAGCATCAAAACCATACACAATATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530639       --> AGTAACAAGCATCAAAACCATACACAAAATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. maritimus
FD968769       --> AGTAACAAGCATCAAAACCATACACAATATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542954       --> AGTAACAAGCATCAAAACCATACAC---GCATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537774       --> AGTAACAAGCATCAAAACCATACACAATATATAGCTTTTGCCATCTAATT  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN25119        --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765375       <-- TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982111       <-- TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905776       <-- TATATAAATCAAGCAAAGAATGTATCCAAAGTACCAAAAAA--GAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923040       <-- TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. landra
FD972989       <-- TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746340       <-- TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. maritimus
EY923126       <-- ........................................AA-GAAACGT  Raphanus raphanistrum subsp. landra
FD541503       <-- ........................................AA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756998       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977738       --> TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769168       --> TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902127       --> TATATAAATCAAGCAAAGAATGTATCCAAAGTACCAAAAAA--GAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918892       --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. landra
EY918958       --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. landra
EX760686       --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAA--GAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530639       --> TATATAAATCAGCCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. maritimus
FD968769       --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542954       --> TATATAAATCAACCAAAGAATGTATCCAAAGTACCAAAAAAAAGAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537774       --> TATATAAATCAAGCAAAGAATGTATCCAAAGTACCAAAAAAA-GAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN25119        --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EX765375       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
FD982111       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY905776       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY923040       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
FD972989       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EX746340       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY923126       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
FD541503       <-- GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EX756998       <-- ..................................................
FD977738       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EX769168       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY902127       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY918892       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EY918958       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EX760686       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCGATCCTTG
FD530639       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
FD968769       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
EV542954       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG
FD537774       --> GGAACTGAAATCAAAGCTTGAGTTGGAATGGGTAAGAAGGCCAATCCTTG

               251    -    301
UN25119        --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EX765375       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD982111       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY905776       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY923040       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD972989       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EX746340       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY923126       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD541503       <-- AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EX756998       <-- ..................................................
FD977738       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EX769168       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY902127       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY918892       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EY918958       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EX760686       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD530639       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD968769       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
EV542954       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC
FD537774       --> AGATCTTCTTCTTGCCTCTGGAACTTACCTCCGTCATCTACAACGCTCTC

               301    -    351
UN25119        --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EX765375       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD982111       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY905776       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY923040       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD972989       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EX746340       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY923126       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD541503       <-- ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EX756998       <-- ..................................................
FD977738       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EX769168       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY902127       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY918892       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EY918958       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EX760686       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD530639       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD968769       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
EV542954       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC
FD537774       --> ATCCAAATAGTCACTATACTTCAACAAGAACGCTAACACAAGAACAACCC

               351    -    401
UN25119        --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EX765375       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD982111       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY905776       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY923040       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD972989       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EX746340       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY923126       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD541503       <-- ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EX756998       <-- ..................................................
FD977738       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EX769168       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY902127       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY918892       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EY918958       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EX760686       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD530639       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD968769       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
EV542954       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC
FD537774       --> ACTCTAAGCAGAACATTACTACACACAAACCACCTGCCAGTTTAAGAATC

               401    -    451
UN25119        --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EX765375       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD982111       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY905776       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY923040       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD972989       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EX746340       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY923126       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD541503       <-- ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EX756998       <-- ..................................................
FD977738       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EX769168       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY902127       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY918892       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EY918958       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EX760686       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD530639       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD968769       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
EV542954       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC
FD537774       --> ACCGCTCCGTCTTCTACAAGAACATACGATTTAAGAACCCTAAGGAAATC

               451    -    501
UN25119        --> CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAATATGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- CCCTGTTCTCGTGAATGTCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765375       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982111       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905776       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923040       <-- CCCTGTTCTCGTGAATATAAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. landra
FD972989       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746340       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. maritimus
EY923126       <-- CCCTGTTCTCGTGAATATAAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. landra
FD541503       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756998       <-- CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977738       --> CCCTGTTCTCGTGAATATCAAAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769168       --> CCCTGTTCTCGTGAATATCAAAACAGA.......................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902127       --> CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918892       --> CCCTGTTCTCGTGAATATAAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. landra
EY918958       --> CCCTGTTCTCGTGAATATAAGAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. landra
EX760686       --> CCCTGTTCTCGTGAATATCAAAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530639       --> CCCTGTTCTCGTGAATATCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. maritimus
FD968769       --> CCCTGTTCTCGTGAATATCAAAACAGAAACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542954       --> CCCTGTTCTCGTGAATGTCAGAACAGAGACTGCCCCTTGGAAAATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537774       --> CCCTGTTCTCGTGAATATCAAAACAGAGACTGCCCCTTGGAATATGGCAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN25119        --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EX765375       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
FD982111       <-- CGAGGACTGTGGCCACCATGTGTACACCGTACAATCTGTCGCTTGTGGTT
EY905776       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EY923040       <-- CGAGGACTGTGGCCACCATGTATGCACCGTACAATCTGTCGCTTGTGGTT
FD972989       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EX746340       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EY923126       <-- CGAGGACTGTGGCCACCATGTATGCACCGTACAATCTGTCGCTTGTGGTT
FD541503       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EX756998       <-- CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
FD977738       --> CGAGGACTGTGGCCACCATGTGTACACCGTACAATCTGTCGCTTGTGGTT
EX769168       --> ..................................................
EY902127       --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EY918892       --> CGAGGACTGTGGCCACCATGTATGCACCGTACAATCTGTCGCTTGTGGTT
EY918958       --> CGAGGACTGTGGCCACCATGTATGCACCGTACAATCTGTCGCTTGTGGTT
EX760686       --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
FD530639       --> CGAGGACTGTGGCCACCATGTGTACACCGTACAATCTGTCGCTTGTGGTT
FD968769       --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
EV542954       --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT
FD537774       --> CGAGGACTGTGGCCACCATGTGTGCACCGTACAATCTGTCGCTTGTGGTT

               551    -    601
UN25119        --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EX765375       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD982111       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EY905776       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCCGTGGCGAT
EY923040       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD972989       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EX746340       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EY923126       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD541503       <-- GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EX756998       <-- ACAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD977738       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EX769168       --> ..................................................
EY902127       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCCGTGGCGAT
EY918892       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EY918958       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EX760686       --> ACAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD530639       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD968769       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
EV542954       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT
FD537774       --> GCAGCGGTTGAAGAGGCGAAAACGGAGCAGCCGGTGACAGCAGTGGCGAT

               601    -    651
UN25119        --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765375       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAG--GGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982111       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905776       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923040       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. landra
FD972989       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746340       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. maritimus
EY923126       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. landra
FD541503       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756998       <-- GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977738       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769168       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902127       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAAGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918892       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. landra
EY918958       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. landra
EX760686       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530639       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGAGAAGGGAAGA  Raphanus raphanistrum subsp. maritimus
FD968769       --> GGTGAGAGTGTGGAGGAAGA..............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542954       --> GGTGAGAGTGTGGAGGAAGA..............................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537774       --> GGTGAGAGTGTGGAGGAAGATGAGAGAGAGGCCGGAGAGGGAAGGGAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN25119        --> GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765375       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD982111       <-- GACGGAGGGAGATTGTGTGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY905776       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY923040       <-- GACGGAGCGAGATTGTGAGGAAGATGCAACTTGAAGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. landra
FD972989       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746340       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. maritimus
EY923126       <-- GACGGAGCGAGATTGTGAGGAAGATGCAACTTGAAGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. landra
FD541503       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX756998       <-- GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD977738       --> GACGGAGGGAGATTGTGTGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX769168       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902127       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY918892       --> GACGGAGCGAGATTGTGAGGAAGATGCAACTTGAAGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. landra
EY918958       --> GACGGAGCGAGATTGTGAGGAAGATGCAACTTGAAGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. landra
EX760686       --> GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530639       --> GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. maritimus
FD968769       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542954       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537774       --> GACGGAGGGAGATTGTGAGGAAGATGCAACTTGAGGCGGAGCCTAAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN25119        --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EX765375       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD982111       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EY905776       <-- GTGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EY923040       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD972989       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EX746340       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EY923126       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD541503       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EX756998       <-- ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD977738       --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EX769168       --> ..................................................
EY902127       --> ..................................................
EY918892       --> ATGTAGTTGCAGAGTAG-AAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EY918958       --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
EX760686       --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD530639       --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA
FD968769       --> ..................................................
EV542954       --> ..................................................
FD537774       --> ATGTAGTTGCAGAGTAGGAAGATGTTGTGTGTGTTTCCTTTAGATCTTGA

               751    -    801
UN25119        --> GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EX765375       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
FD982111       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EY905776       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EY923040       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
FD972989       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EX746340       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EY923126       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
FD541503       <-- GATTCCCATTTCTCTGGTTAAGTAAGGGTTTATACAATTTTTGGCTAGGG
EX756998       <-- GATTCCCATTTCTCTGGTT----AAGGGTTTATACAAATTTTGGCTAGGG
FD977738       --> GATTCCC...........................................
EX769168       --> ..................................................
EY902127       --> ..................................................
EY918892       --> GAT-CCCATTTCTC....................................
EY918958       --> GATTCCCATTTCTCTGGTTAA.............................
EX760686       --> GATTCCCATTTCTCTGGTTAAG----GGTTTATACAAATTTTGGCTAGGG
FD530639       --> GATTCCCATTTCTCTGGTTAAGTAAGG.......................
FD968769       --> ..................................................
EV542954       --> ..................................................
FD537774       --> GATTCCCATTTCTCTGGTTAAG............................

               801    -    851
UN25119        --> AAGAGATACTCAGTTTTTTTTTT---ATGTAAGATGTTCTGTTCGTCC..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539075       <-- AAGAGATACTCAGTTTTTTTTTTTTTATGTAAGATGTTCTGTTCGTCCct
EX765375       <-- AAGAGATACTCAGTTTTTTTTT----ATGTAAGATGTTCTGTTCGTCC..
FD982111       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGctcc.............
EY905776       <-- AAGAGATACTCAGTTTTTTTTTT--TATGTAAGATGTTCTGTTCGTCC..
EY923040       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGAAGTTCTGTTCGTCC..
FD972989       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGATGTTCTGTTCGTCC..
EX746340       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGATGTTCTcc........
EY923126       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGAAGTTCTGTTCGTCC..
FD541503       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGATGTTCTcc........
EX756998       <-- AAGAGATACTCAGTTTTTTTTTT---ATGTAAGACGTTCTGTTCGTCC..
FD977738       --> ..................................................
EX769168       --> ..................................................
EY902127       --> ..................................................
EY918892       --> ..................................................
EY918958       --> ..................................................
EX760686       --> AAGAGATACTCAGTTTTTTTTTT---ATGTAAG.................
FD530639       --> ..................................................
FD968769       --> ..................................................
EV542954       --> ..................................................
FD537774       --> ..................................................