RadishBase

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Alignment for radish unigene UN25128

               1      -     51
UN25128        --> GGGGGGCCTCGTCTTCTTCCTCAGATTCTCGTTAAAATCGCGCAACACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ..................................................
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> GGGGGGCCTCGTCTTCTTCCTCACATTCTCGTTAAAATCGCGCAACACCT
EV537504       --> ..............agggCCTCACATTCTCGTTAAAATCGCGCAACACCT
EX746567       --> ................ggCCTCACATTCTCGTTAAAATCGCGCAACACCT
EX772477       --> ......................gGATTCTCGTTAAAATCGCGCAACACCT
EY906335       --> ......................gGATTCTCGTTAAAATCGCGCAACACCT
FD957963       --> .......................GATTCTCGTTAAAATCGCGCAACACCT
EV538249       --> .........................ggCTCGTTAAAATCGCGCAACACCT
FD579079       --> ..................................................
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> ..................................................
EY900279       --> ..................................................
FD980349       --> ..................................................

               51     -    101
UN25128        --> TACCCATCTCCGGACGGCGAACATCTTCAAATCCTCGACGACGGCAAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ..................................................
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> TACCCATCTCCGGACGGCGAACATTTCCAAATCCTCGACGACGGCAAACC
EV537504       --> TACCCATCTCCGGACGGCGAACATCTCCAAATCCTCGACGACGGCAAACC
EX746567       --> TACCCATCTCCGGACGGCGAGCATCTTCAAATCCTCGACGACGGCAAACC
EX772477       --> TACCCATCTCCGGACGGCGAACGTCTTCAAATCCTCGACGACGGCAAACC
EY906335       --> TACCCATCTCCGGACGGCGAACATCTCCAAATCCTCGACGACGGCAAACC
FD957963       --> CACCCATCTCCGGACGGCGAACATCTTCAAATCCTCGACGACGGCAAACC
EV538249       --> TACCCATCTCCGGACGGCGAACATCTCCAAATCCTCGACGACGGCAAACC
FD579079       --> ..........gGGACGGCGAACATCTTCAAATCCTCGACGACGGCAAACC
FD949040       --> ...............................gCCTCGACTACGGTAAACC
FD966098       --> ..................................................
EX748771       --> ..................................................
EY900279       --> ..................................................
FD980349       --> ..................................................

               101    -    151
UN25128        --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV541717       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944738       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730993       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY942340       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD545237       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945277       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY902537       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961654       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD549150       --> CAATTTCTCAAAATCCGAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537504       --> CAATTTCTCAAAATCCGAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746567       --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. maritimus
EX772477       --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. landra
EY906335       --> CAATTTCTCAAAATCTGAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD957963       --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
EV538249       --> CAATTTCTCAAAATCCGAAAGGTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD579079       --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus sativus cv Rat-Tail Radish #3870
FD949040       --> CAATTTCTCAAAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus sativus cv Early Scarlet Globe
FD966098       --> ..........gAATCCAAAAGTTTCAAACTTTTGATTTTGATTTGGTGGT  Raphanus raphanistrum subsp. maritimus
EX748771       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900279       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD980349       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN25128        --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ..................................................
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
EV537504       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGGTCTCAAGACCTTA
EX746567       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
EX772477       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
EY906335       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
FD957963       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
EV538249       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
FD579079       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
FD949040       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
FD966098       --> GGAGCGATATGGACGATTACACTAGAGAGATGATGGATCTCAAGACCTTA
EX748771       --> .....................CTAGAGAGATGATGGATCTCAAGACCTTA
EY900279       --> .....................CTAGAGAGATGATGGATCTCAAGACCTTA
FD980349       --> ..................................................

               201    -    251
UN25128        --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ................................................GA
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
EV537504       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
EX746567       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCACTAAGATCCGGGCTGA
EX772477       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
EY906335       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
FD957963       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGGTCCGGGCTGA
EV538249       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
FD579079       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
FD949040       --> GTCACTCGAACCCTCGAGA-GAAGGGTGTTCTCGCTAAGATCCGGGCTGA
FD966098       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
EX748771       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
EY900279       --> GTCACTCGAACCCTCGAGAAGAAGGGTGTTCTCGCTAAGATCCGGGCTGA
FD980349       --> ..................................................

               251    -    301
UN25128        --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GCTACGAGCGAGTGTGTT-GAGGCA-CTGAAGAAGAG-ATCGAGTGAT-G
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> GCTACGAGCGAGTGTGTTTGAGGTAATTGAAGAAGAGGATCGAGTGATTG
EV537504       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
EX746567       --> GCTACGAGCGAGTGTGTTTGAGGCACTTGAAGAAGAGGATCGAGTGATTG
EX772477       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
EY906335       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
FD957963       --> GCTACG-GCGAGTGT-TTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
EV538249       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
FD579079       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
FD949040       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
FD966098       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
EX748771       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
EY900279       --> GCTACGAGCGAGTGTGTTTGAGGCAATTGAAGAAGAGGATCGAGTGATTG
FD980349       --> ..................................................

               301    -    351
UN25128        --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGCAGCTGTAATGATCGT
EV541717       <-- ..................................................
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
EV537504       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
EX746567       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGCAGCTGTAATGATCGT
EX772477       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
EY906335       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
FD957963       --> AGAACAACGAAGGGCTGCCTCCAGCTTTGCTGGGAAGCTGTAATGATCGT
EV538249       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
FD579079       --> AGAACAACGAAGGGCTGCCTCCAGCTTTGTTGGGAAGCTGTAACGATCGT
FD949040       --> AGAACAACGAAGGGCTTCCTCCAGCTTTGTTGGGAAGCTGTAATGATCGT
FD966098       --> AGAACAACGAAGGGCTGTCACCAGCTTTGTTGGGAAGCTGTAATGATCGT
EX748771       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGCAGCTGTAATGATCGT
EY900279       --> AGAACAACGAAGGGCTGCCACCAGCTTTGTTGGGCAGCTGTAATGATCGT
FD980349       --> ..................................................

               351    -    401
UN25128        --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GCAAGGCAGCTTCACGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EV541717       <-- ................................GTT-GCTGTGTGCGTTAG
FD944738       <-- ..................................................
EW730993       <-- ..................................................
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCATTAG
EV537504       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EX746567       --> GCAAGGCAGCTTCACGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EX772477       --> GCAAGGCAGCTTCATGCTCTTCCCTC........................
EY906335       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
FD957963       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EV538249       --> GCAAGGCAGCTTCATACTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
FD579079       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
FD949040       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
FD966098       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EX748771       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
EY900279       --> GCAAGGCAGCTTCATGCTCTTCCCTCAGGTAGGTT-GCTGTGTGCGTTAG
FD980349       --> .............................TAGGTTTGCTGTGTGCGTTAG

               401    -    451
UN25128        --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EV541717       <-- TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD944738       <-- ...GTGAGTACGTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EW730993       <-- ..............................ATCACACGCTCAAAGTGTAT
EY942340       <-- ..................................................
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EV537504       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EX746567       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EX772477       --> ..................................................
EY906335       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD957963       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EV538249       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD579079       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD949040       --> TTTGTGAGTACGTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD966098       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EX748771       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
EY900279       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT
FD980349       --> TTTGTGAGTACTTGGAATGGGCGCAACTCGATCACACGCTCAAAGTGTAT

               451    -    501
UN25128        --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CAACCCGAATGCAATTTGCAAAAGGATTCTTGGAAGTCTGAATTAAGCGA
EV541717       <-- CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
FD944738       <-- CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EW730993       <-- CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EY942340       <-- .................................AAGTCTGAATTAAGCGA
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EV537504       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EX746567       --> CAACCCGAATGCAATTTGCAAAAGGATTCTTGGAAGTCTGAATTAAGCGA
EX772477       --> ..................................................
EY906335       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
FD957963       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EV538249       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
FD579079       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
FD949040       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
FD966098       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA
EX748771       --> CAACCCGAATGCAATTTGCAAAAGGATTCTTGGAAGTCTGAATTAAGCGA
EY900279       --> CAACCCGAATGCAATTTGCAAAAGGATTCTTGGAAGTCTGAATTAAGCGA
FD980349       --> CAACCCGAATGCAATTTGCAAAAGGACTCTTGGAAGTCTGAATTAAGCGA

               501    -    551
UN25128        --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EV541717       <-- CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD944738       <-- CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EW730993       <-- CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EY942340       <-- CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD545237       <-- ..................................................
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EV537504       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EX746567       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EX772477       --> ..................................................
EY906335       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD957963       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EV538249       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD579079       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD949040       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD966098       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EX748771       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
EY900279       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC
FD980349       --> CTTTAGCAGCAACCATGGTTATGAGCTCAACAGAAATGGAGATAGCGCAC

               551    -    601
UN25128        --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EV541717       <-- CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD944738       <-- CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EW730993       <-- CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EY942340       <-- CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD545237       <-- ......TTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EY945277       <-- ..................................................
EY902537       <-- ..................................................
FD961654       <-- ..................................................
FD549150       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCA.....
EV537504       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EX746567       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EX772477       --> ..................................................
EY906335       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD957963       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGTATGACA
EV538249       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD579079       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD949040       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD966098       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA
EX748771       --> CTCTCCTTCTCGATGTTCTCGAAGGATTCTTGAAGTTCGAGAGCATGACA
EY900279       --> CTCTCCTTCTCGATGTTCTCGAAGGATTCTTGAAGTTCGAGAGCATGACA
FD980349       --> CTCTCCTTCTCGATGTTCTTGAAGGATTCTTGAAGTTCGAGAGCATGACA

               601    -    651
UN25128        --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. maritimus
EV541717       <-- CAGATTACTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944738       <-- CGGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCGTCAAGCCT  Raphanus sativus cv Early Scarlet Globe
EW730993       <-- CGGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTTTTCGTCAAGCCT  Raphanus sativus cv Early Scarlet Globe
EY942340       <-- CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus sativus cv Rat-Tail Radish #3870
FD545237       <-- CAGATTACTAATTCAAGGAGAGACCCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945277       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY902537       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961654       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD549150       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537504       --> CAGATTACTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746567       --> CAGATTAGTAATTCAAGGAGAGACTCTGAA-CTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. maritimus
EX772477       --> ..................................................  Raphanus raphanistrum subsp. landra
EY906335       --> CAGATTACTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD957963       --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus sativus cv Rat-Tail Radish #3870
EV538249       --> CAGATTACTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD579079       --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus sativus cv Rat-Tail Radish #3870
FD949040       --> CGGATTAGTAATT.....................................  Raphanus sativus cv Early Scarlet Globe
FD966098       --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. maritimus
EX748771       --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGGGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. maritimus
EY900279       --> CAGATTAGTAATTCAAGGAGAGACTCTGAAACTGGGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. maritimus
FD980349       --> CAGATTACTAATTCAAGGAGAGACTCTGAAACTGAGTCTTCATCAAGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN25128        --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus raphanistrum subsp. maritimus
EV541717       <-- TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944738       <-- TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus sativus cv Early Scarlet Globe
EW730993       <-- TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus sativus cv Early Scarlet Globe
EY942340       <-- TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus sativus cv Rat-Tail Radish #3870
FD545237       <-- TGACTCTAAGAATCCTCCTCGCAGATCATCTGCATCTGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945277       <-- .....................................GACAACTTGCCTC  Raphanus sativus cv Rat-Tail Radish #3870
EY902537       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961654       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD549150       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537504       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746567       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus raphanistrum subsp. maritimus
EX772477       --> ..................................................  Raphanus raphanistrum subsp. landra
EY906335       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCCGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD957963       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus sativus cv Rat-Tail Radish #3870
EV538249       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD579079       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus sativus cv Rat-Tail Radish #3870
FD949040       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD966098       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus raphanistrum subsp. maritimus
EX748771       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus raphanistrum subsp. maritimus
EY900279       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAACTTGCCTC  Raphanus raphanistrum subsp. maritimus
FD980349       --> TGACTCTAGGAATCCTCCTCGCAGATCATCTGCATCTGACAATTTGCCTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN25128        --> CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EV541717       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
FD944738       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EW730993       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EY942340       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
FD545237       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EY945277       <-- CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EY902537       <-- .....AGAAGGACGGGTTCTGGATCCCAAGGAGCAGAT-GAAGAGGTGGG
FD961654       <-- ......GAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
FD549150       --> ..................................................
EV537504       --> CTCTAAGAAAGACGGGTTCTGGATCC........................
EX746567       --> CTCTAAGAAAGACGGGTTCTGGATCCCAAG-AGCAGATAGAAGAG-TGGG
EX772477       --> ..................................................
EY906335       --> CTCTA.............................................
FD957963       --> CTCTAAGAAG-ACGGCATCTGGATC.........................
EV538249       --> CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAA........
FD579079       --> CTCTAAGAACGACGGCATCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
FD949040       --> ..................................................
FD966098       --> CTCTAAGAAAGACGGGTTC...............................
EX748771       --> CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
EY900279       --> CTCTAAGAAGGACGGGTTCTGGATCCCAAGGAGCAGATAGAAGAGGTGGG
FD980349       --> CTCTAAGAAGGACGGGTTCTGGATCCCAAG-AGCAGA.............

               751    -    801
UN25128        --> AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
EV541717       <-- AGTAATTACAGAAAAGATGGAATCAACTGGAGACACGGTAATCAAGATGC
FD944738       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
EW730993       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGCCACGGTAATCAAGATGC
EY942340       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
FD545237       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
EY945277       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
EY902537       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
FD961654       <-- AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> AGTA-TTACAGAAA-GATGAAATCA-CTGGAGA.................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
EY900279       --> AGTAATTACAGAAAAGATGAAATCAACTGGAGACACGGTAATCAAGATGC
FD980349       --> ..................................................

               801    -    851
UN25128        --> GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EV541717       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD944738       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EW730993       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EY942340       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD545237       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EY945277       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EY902537       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD961654       <-- GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> ..................................................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
EY900279       --> GCATGAAGAGGTGATGAGAGCTTCAGCGGCACTTGAGAATCTTCAGCTTG
FD980349       --> ..................................................

               851    -    901
UN25128        --> ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
EV541717       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
FD944738       <-- ATAGGAAAACTCGGAACATGACATCCTCGTGGAGGAATGTGAGGGATGG-
EW730993       <-- ATAGGAAAACTCGGAACATGACATCCTCGTGGAGGAATGTGAGGGATGG-
EY942340       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
FD545237       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
EY945277       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
EY902537       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
FD961654       <-- ATAGGAAAACTCGGAACATGACATCCTCTTGGAGGAATGTGAGGGATGGA
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> ..................................................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> ..................................................
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> ATAGGAAA-CTCGGAACATGACATC.........................
EY900279       --> ATAGGAAA-CTCGGA-CATGACATCCTCTTGGAGGA-TGTGAGGGATGGA
FD980349       --> ..................................................

               901    -    951
UN25128        --> GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAATTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAACTAAAAA
EV541717       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTGGCTAATTAAAAA
FD944738       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTACTAATTAAAAA
EW730993       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTACTAATTAAAAA
EY942340       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAACTAAAAA
FD545237       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAATTAAAAA
EY945277       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAATTAAAAA
EY902537       <-- GCAAATGAAGATGAAGGGAGGGATTGGGTTAGGAGGTTGCTAATTAAAAA
FD961654       <-- GCAAATGAAGATGAAGGGAGGGATTGAGTTAGGAGGTTGCTAACTAAAAA
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> ..................................................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> ..................................................
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> ..................................................
EY900279       --> GCAAtgagatg.......................................
FD980349       --> ..................................................

               951    -   1001
UN25128        --> A-TGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- AATGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus raphanistrum subsp. maritimus
EV541717       <-- A-TGCAGCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944738       <-- A-TGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus sativus cv Early Scarlet Globe
EW730993       <-- A-TGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus sativus cv Early Scarlet Globe
EY942340       <-- Aa................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD545237       <-- A-TGCAGCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945277       <-- A-TGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus sativus cv Rat-Tail Radish #3870
EY902537       <-- A-TGCAGCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961654       <-- AACGCATCTTCTGAGAATTGAGTGTTGGTTTGTGTACGTGTGATATGTAT  Raphanus raphanistrum subsp. maritimus
FD549150       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537504       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746567       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX772477       --> ..................................................  Raphanus raphanistrum subsp. landra
EY906335       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD957963       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV538249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD579079       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949040       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD966098       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748771       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900279       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD980349       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN25128        --> GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT  Raphanus raphanistrum subsp. maritimus
EV541717       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD944738       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT  Raphanus sativus cv Early Scarlet Globe
EW730993       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT  Raphanus sativus cv Early Scarlet Globe
EY942340       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD545237       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY945277       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY902537       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961654       <-- GTATGCTCTTTATTTGCAAACTGTGTGTTTCGCGGGAACCCCTTCTGTTT  Raphanus raphanistrum subsp. maritimus
FD549150       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV537504       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX746567       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX772477       --> ..................................................  Raphanus raphanistrum subsp. landra
EY906335       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD957963       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV538249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD579079       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD949040       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD966098       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX748771       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900279       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD980349       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1051   -   1101
UN25128        --> CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
EV541717       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
FD944738       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
EW730993       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
EY942340       <-- ..................................................
FD545237       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
EY945277       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
EY902537       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
FD961654       <-- CTTTTAAGGTTATTCATGAGATCATATTGAACTGTTTAATGTTTATTTCT
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> ..................................................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> ..................................................
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> ..................................................
EY900279       --> ..................................................
FD980349       --> ..................................................

               1101   -   1151
UN25128        --> GAATTTTTTACACATAGAGACACTTTTCCACATTCCAATGAGTTGATTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX750939       <-- GAAATTTTTACACAT...................................
EV541717       <-- GAATTTTTTACGCATAGAAACACTTTTCCACATTCCAATGAGTTGATTAC
FD944738       <-- GAATTTTTTACAC.....................................
EW730993       <-- GAATTTTTTACAC.....................................
EY942340       <-- ..................................................
FD545237       <-- GAATTTTTTACGCATAGAGACACTTTTCCAC...................
EY945277       <-- GAATTTTTTACAC--AGAGACACTTTTCCACATTCCAATGAGTTGATTAC
EY902537       <-- GAATTTTTTACgc.....................................
FD961654       <-- GAATTTTTTACAC.....................................
FD549150       --> ..................................................
EV537504       --> ..................................................
EX746567       --> ..................................................
EX772477       --> ..................................................
EY906335       --> ..................................................
FD957963       --> ..................................................
EV538249       --> ..................................................
FD579079       --> ..................................................
FD949040       --> ..................................................
FD966098       --> ..................................................
EX748771       --> ..................................................
EY900279       --> ..................................................
FD980349       --> ..................................................

               1151   -   1201
UN25128        --> TTTCTAGGAC
                   ~~~~~~~~~~
EX750939       <-- ..........
EV541717       <-- TTTCTAGGAt
FD944738       <-- ..........
EW730993       <-- ..........
EY942340       <-- ..........
FD545237       <-- ..........
EY945277       <-- TTTCTAGGAC
EY902537       <-- ..........
FD961654       <-- ..........
FD549150       --> ..........
EV537504       --> ..........
EX746567       --> ..........
EX772477       --> ..........
EY906335       --> ..........
FD957963       --> ..........
EV538249       --> ..........
FD579079       --> ..........
FD949040       --> ..........
FD966098       --> ..........
EX748771       --> ..........
EY900279       --> ..........
FD980349       --> ..........