Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN25401

               1      -     51
UN25401        --> GGACTTCACAATTCCCTCACGGCATATTCTATCACCTCGCAGAAAAATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- GGACTTCACAATTCCCTCACGGCATATTCTATCACCTCGCAGAAAAATTC
FD565473       <-- ..................................................
FD566457       <-- ..................................................
EW714470       --> GGACTTCACAATTCCCTCATGGCATATTCTATCACCTCGCTGAAAAATTC
EX746809       --> GGACTTCACAATTCCCTCACGGCATATTCTATCACCTCGCAGAAAAATTC
EX765372       --> ................ggatGGCATATTCTATCACCTCGCAGAAAAATTC
FD561252       --> ..................................................
FD562589       --> ..................................................

               51     -    101
UN25401        --> AAACTCAAACAACGATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- AAACTCAAACAACGATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus raphanistrum subsp. maritimus
FD565473       <-- ....ggAAACAACAATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus sativus var. oleiformis
FD566457       <-- ..................................................  Raphanus sativus var. oleiformis
EW714470       --> AAACTCAAACAACAATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus sativus var. oleiformis
EX746809       --> AAACTCAAACAACGATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus raphanistrum subsp. maritimus
EX765372       --> AAACTCAAACAATGATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> ....ggAAACAACAATGGCGACGAGCAACGAACCAGAGTTTGCAACGGCG  Raphanus sativus var. oleiformis
FD562589       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN25401        --> GTGGCGGTTGCTACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- GTGGCGGTTGCGACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG  Raphanus raphanistrum subsp. maritimus
FD565473       <-- GTGGCGGTTGCTACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG  Raphanus sativus var. oleiformis
FD566457       <-- ..................................................  Raphanus sativus var. oleiformis
EW714470       --> GTGGCGGTTGCTACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG  Raphanus sativus var. oleiformis
EX746809       --> GTGGCGGTTGCGACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG  Raphanus raphanistrum subsp. maritimus
EX765372       --> GTGGCGGTTGCGACAAAGCAAAGAACGTTCAAGAAGTTCTTATTCAGAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> GTGGCGGTTGCTACAAAGCAAAGAACGTTCAAGAAGTTCTCATTCAGAGG  Raphanus sativus var. oleiformis
FD562589       --> ..................................................  Raphanus sativus var. oleiformis

               151    -    201
UN25401        --> ATTCAACGTCGAAGCTCTTCTCAAAATGTCCACATATGATCTCTCTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- ATTCAACGTCGAAGCTCTTCTCAAAATGTCCACATATAATCTCTCTAAGC  Raphanus raphanistrum subsp. maritimus
FD565473       <-- ATTCAACGTCGAAGCTCTTCTCAACATGTCCACATATGATCTCTCTAAGC  Raphanus sativus var. oleiformis
FD566457       <-- ....gACGTCGAAGCTCTTCTCAAAATGTCCACATATGATCTCTTTAAGC  Raphanus sativus var. oleiformis
EW714470       --> ATTCAACGTCGAAGCTCTTCTCAAAATGTCCACATATGATCTCTCTAAGC  Raphanus sativus var. oleiformis
EX746809       --> ATTCAACGTCGAAGCTCTTCTCAAAATGTCCACATATAATCTCTCTAAGC  Raphanus raphanistrum subsp. maritimus
EX765372       --> ATTCAACGTCGAAGCTCTTCTCAAAATGTCCACATATAATCTCTCTAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> ATTCAACGTCGAAGCTCTTCTCAACATGTCCACATATGATCTCTCTAAGC  Raphanus sativus var. oleiformis
FD562589       --> ....gACGTCGAAGCTCTTCTCAAAATGTCCACATATGATCTCTCTAAGC  Raphanus sativus var. oleiformis

               201    -    251
UN25401        --> TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- TGTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus raphanistrum subsp. maritimus
FD565473       <-- TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus sativus var. oleiformis
FD566457       <-- TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus sativus var. oleiformis
EW714470       --> TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus sativus var. oleiformis
EX746809       --> TGTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus raphanistrum subsp. maritimus
EX765372       --> TGTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGGTAAAGAAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus sativus var. oleiformis
FD562589       --> TTTTCAACGCTCGTGTTCGAAGGAGATTCTATAGAGGGCTAAAGAAGAAG  Raphanus sativus var. oleiformis

               251    -    301
UN25401        --> CCTCTGATTCTGATCAAGAAGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- CCTCTGATTCTGATCAAGACGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
FD565473       <-- CCTCTGATTCTGATCAAGAAGCTACGCGAGGCGAAGAAAGAAGCAAAAGA
FD566457       <-- CCTCTGATTCTGATCAAGAAGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
EW714470       --> CCTCTGATTCTGATCAAGAAGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
EX746809       --> CCTCTGATTCTGATCAAGACGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
EX765372       --> CCTCTGATTCTGATCAAGAAGCTACGCAAGGCGAAGAAAGAAGCAAAAGA
FD561252       --> CCTCTGATTCTGATCAAGAAGCTACGCGAGGCGAAGAAAGAAGCAAAAGA
FD562589       --> CCTCTGATTCTGATCAAGAAGCTACGCAAGGCGAAGAAAGAAGCAAAAGA

               301    -    351
UN25401        --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
FD565473       <-- TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
FD566457       <-- TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATTTGAGGAACATGA
EW714470       --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
EX746809       --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
EX765372       --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
FD561252       --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA
FD562589       --> TGGGGACAAGAAGAAGCCTGAAGTGGTGAAAACGCATCTGAGGAACATGA

               351    -    401
UN25401        --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTATG
FD565473       <-- TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTAAG
FD566457       <-- TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTTCATAACGGTAAG
EW714470       --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTAAG
EX746809       --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTATG
EX765372       --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTAAG
FD561252       --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTGCATAACGGTAAG
FD562589       --> TCATTGTCCCTGAGATGATTGGAAGTGTTGTCGGAGTTCATAACGGTAAG

               401    -    451
UN25401        --> AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- AAGTTTAACGAGGTTGTGATTAAACCGGAGATGATTGGTCATTATCTTGC  Raphanus raphanistrum subsp. maritimus
FD565473       <-- AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCTTGC  Raphanus sativus var. oleiformis
FD566457       <-- AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCTTGC  Raphanus sativus var. oleiformis
EW714470       --> AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCCTGC  Raphanus sativus var. oleiformis
EX746809       --> AAGTTTAACGAGGTTGTGATTAAACCGGAGATGATTGGTCATTATCTTGC  Raphanus raphanistrum subsp. maritimus
EX765372       --> AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCATTATCTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCTTGC  Raphanus sativus var. oleiformis
FD562589       --> AAGTTTAACGAGGTCGTGATTAAACCTGAGATGATTGGTCACTATCTTGC  Raphanus sativus var. oleiformis

               451    -    501
UN25401        --> GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- GGAGTTTTCGATGACTTGCAAGAAAGTTAATCACTATAGACCACGTATAT  Raphanus raphanistrum subsp. maritimus
FD565473       <-- GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT  Raphanus sativus var. oleiformis
FD566457       <-- GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT  Raphanus sativus var. oleiformis
EW714470       --> GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT  Raphanus sativus var. oleiformis
EX746809       --> GGAGTTTTCGATGACTTGCAAGAAAGTTAATCACTATAGACCACGTATAT  Raphanus raphanistrum subsp. maritimus
EX765372       --> GGAGTTTTCGATGACTTGCAAGAAAGTTAATCACTATAGACCACGTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD561252       --> GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT  Raphanus sativus var. oleiformis
FD562589       --> GGAGTTTTCGATGACTTGCAAGAAAGTTGATCACTATAGACCACGTATAT  Raphanus sativus var. oleiformis

               501    -    551
UN25401        --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
FD565473       <-- GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
FD566457       <-- GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
EW714470       --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTCTTCCTCTGAGGTGA
EX746809       --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
EX765372       --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTTCTCTGAGGTGA
FD561252       --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA
FD562589       --> GTGGTTGTGGTTGTTACCGTAATTCCACCAGGTTTATTCCTCTGAGGTGA

               551    -    601
UN25401        --> TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
FD565473       <-- TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
FD566457       <-- TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
EW714470       --> TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
EX746809       --> TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
EX765372       --> TTGAAGGAAAATCTCTTTTATATTCTGTTATATTGTGCTCAAATTATTTT
FD561252       --> TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT
FD562589       --> TTGAAGGAAAATCTCTTTTATTTTCTGTTATATTGTGCTCAAATTATTTT

               601    -    651
UN25401        --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751133       <-- CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCCCCTTCTA
FD565473       <-- CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
FD566457       <-- CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
EW714470       --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
EX746809       --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
EX765372       --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
FD561252       --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA
FD562589       --> CTTGCTATGTTTTGTGTTTTCTCTACTTTAGAATGTTCTTTCACCTTCTA

               651    -    701
UN25401        --> ATAAAACTAAAAATTGC
                   ~~~~~~~~~~~~~~~~~
EX751133       <-- ATAAAACTAAAAATTGC
FD565473       <-- ATAAAACTAAAAATTGC
FD566457       <-- ATAAAACTAAAAATTGC
EW714470       --> ATAAAACT.........
EX746809       --> ATAAAACT.........
EX765372       --> ATAAAACTAAAAA....
FD561252       --> ATAAAACTAAAAATTGC
FD562589       --> ATAAAACTAAAAATTGC