1      -     51
UN25501        --> GGAGTATATAGTTCACATCTCTCTTGTCACCTGAGGGCTTCAGGAGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- ..................................................
FD969750       <-- ..................................................
FD539194       <-- ..................................................
FD942360       <-- ..................................................
FD987696       --> GGAGTATATAGTTCACATCTCTCTTGTCACCTGAGGGCTTCAGAAGTTGG
FD974232       --> ..........................................GGAGTTGG
FD946185       --> ...........................................ggGTTGG
FD543330       --> ...............................................gGG
FD571518       --> ..............................................ggGG
EX753993       --> ..................................................

               51     -    101
UN25501        --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- ..............TTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
FD969750       <-- ........................TCTCTCTCTCTTTACACGAGGTGAGA
FD539194       <-- ............................TCTCTCTTTACACGAAGTGAGA
FD942360       <-- ..................................................
FD987696       --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
FD974232       --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAGGTGAGA
FD946185       --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
FD543330       --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
FD571518       --> GAAAAGACCACCATTTATTATTCCTCTCTCTCTCTTTACACGAAGTGAGA
EX753993       --> ............................................GTGAGA

               101    -    151
UN25501        --> CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- CGCAATGGAACACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. landra
FD969750       <-- CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD987696       --> CGCAATGGAACACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. landra
FD974232       --> CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> CGCAATGGAACACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus sativus cv Early Scarlet Globe
FD543330       --> CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> CGCAATGGAACACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus sativus cv Early Scarlet Globe
EX753993       --> CGCAATGGAGCACGAGCGCAAGAACAATCTGAATGGGATGGAGATGGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN25501        --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
FD969750       <-- AGGGAAAGAAGGAGAGCGGTTCGAGAAA-GGGCTTGAGTTAACGATGAGA
FD539194       <-- AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
FD942360       <-- ..................................................
FD987696       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
FD974232       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAA-GGGCTTGAGTTAACGATGAGA
FD946185       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
FD543330       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
FD571518       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA
EX753993       --> AGGGAAAGAAGGAGAGCGGTTCGAGAAAAGGGCTTGAGTTAACGATGAGA

               201    -    251
UN25501        --> GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- GTGTTGGCTTGGGTCCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. landra
FD969750       <-- GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD987696       --> GTGTTGGCTTGGGTCCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. landra
FD974232       --> GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> GTGTTGGCTTGGGTCCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus sativus cv Early Scarlet Globe
FD543330       --> GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> GTGTTGGCTTGGGTCCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus sativus cv Early Scarlet Globe
EX753993       --> GTGTTGGCTTGGGTTCTAACACTGGCGGCTGCAACAGTACTTGGTGTCGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN25501        --> AAAACAGACAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- AAAACAGACGAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTT  Raphanus raphanistrum subsp. landra
FD969750       <-- AAAACAGACAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- AAAACAGACAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD987696       --> AAAACAGACGAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTT  Raphanus raphanistrum subsp. landra
FD974232       --> AAAACAGACAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> AAAACAGACGAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
FD543330       --> AAAACAGACAAAGGTTGTGTCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> AAAACAGACGAAGGTTGTGCCTATAACGCTTATTCCAACTTTGCCTCCTC  Raphanus sativus cv Early Scarlet Globe
EX753993       --> AAAACAGACAAAGGTTGTGTCTATAGCGCTTATTCCAACTTTGCCTCCTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN25501        --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCGTTTGTGTTC  Raphanus raphanistrum subsp. landra
FD969750       <-- TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- ...................................TCTGCGATTGTGTTC  Raphanus sativus cv Early Scarlet Globe
FD987696       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCGTTTGTGTTC  Raphanus raphanistrum subsp. landra
FD974232       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCGATTGTGTTC  Raphanus sativus cv Early Scarlet Globe
FD543330       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCGTTTGTGTTC  Raphanus sativus cv Early Scarlet Globe
EX753993       --> TTGATGTGCCCGCAACAGCCAAAGCCTCTTACTTGTCTGCCTTTGTGTTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN25501        --> AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD969750       <-- AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD539194       <-- AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD942360       <-- AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD987696       --> AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD974232       --> AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD946185       --> AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD543330       --> AACATTTCGGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT
FD571518       --> AACATTTCGGCAAACGCTATAACTTGCGGTTACACAGCGATCTCAATAGT
EX753993       --> AACATTTCTGCAAACGCTATAGCTTGCGGTTACACAGCGATCTCAATAGT

               401    -    451
UN25501        --> CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- CATTTTGATGATCAGCAA-GAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD969750       <-- CATTTTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD539194       <-- CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD942360       <-- CATTTTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD987696       --> CATTCTGATGATCAGCAA-GAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD974232       --> CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD946185       --> CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD543330       --> CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATGGCGG
FD571518       --> CATTCTGATGATCAGCAAAGAAAGAAGAAGCAAAGGCTTGATAATTGCGG
EX753993       --> CATTCTGATGATCAGCAAAAAAAGAAGAGGCAAAGGCTTGATAATGGCGG

               451    -    501
UN25501        --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
FD969750       <-- TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCAGA
FD539194       <-- TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
FD942360       <-- TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCCCCGGA
FD987696       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
FD974232       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCAGA
FD946185       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
FD543330       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
FD571518       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA
EX753993       --> TGTTGGTAGGTGATCTAGTGATGATGGCTTTGCTATTTTCCGGCACCGGA

               501    -    551
UN25501        --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT  Raphanus raphanistrum subsp. landra
FD969750       <-- GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAGCATGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAGCATGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT  Raphanus sativus cv Early Scarlet Globe
FD987696       --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT  Raphanus raphanistrum subsp. landra
FD974232       --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAGCATGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT  Raphanus sativus cv Early Scarlet Globe
FD543330       --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAGCATGTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> GCTGCTGGAGCAATAGGGTTGATGGGTGTACAAGGGAACAAACATGTGAT  Raphanus sativus cv Early Scarlet Globe
EX753993       --> GCTGCTGGAGCAATAtg.................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN25501        --> GTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- GTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. landra
FD969750       <-- GTGGAAGAAAGTGTGTAATGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539194       <-- GTGGAAGAAAGTGTGTAATGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD942360       <-- GTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus sativus cv Early Scarlet Globe
FD987696       --> GTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. landra
FD974232       --> GTGGAAGAAAGTGTGTAATGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946185       --> GTGGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus sativus cv Early Scarlet Globe
FD543330       --> GTGGAAGAAAGTGTGTAATGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571518       --> GTTGAAGAAAGTGTGTAACGTTTTTGGAAAATTCTGTCACCAAACTGCTG  Raphanus sativus cv Early Scarlet Globe
EX753993       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN25501        --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD969750       <-- CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD539194       <-- CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD942360       <-- CTTCGGTTGCCATCACTTTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD987696       --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD974232       --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD946185       --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD543330       --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
FD571518       --> CTTCGGTTGCCATCACTCTTCTTGCTGCAATCGTGTTTATGGTTCTTGTT
EX753993       --> ..................................................

               651    -    701
UN25501        --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD969750       <-- GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD539194       <-- GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD942360       <-- GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATTTTCCTTAATG
FD987696       --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD974232       --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD946185       --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD543330       --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
FD571518       --> GTTCTTGATGCTATGAAGCTTCCTTAATGCAATTGATATCTTCCTTAATG
EX753993       --> ..................................................

               701    -    751
UN25501        --> CAATTGATATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- CAATTGATATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
FD969750       <-- CAATTGGTATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
FD539194       <-- CAATTGATATGTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
FD942360       <-- CAATTGATATTTTTGTTTtt..............................
FD987696       --> CAATTGATATTTCTGTTTCTTCTTACAGCTCTT.................
FD974232       --> CAATTGGTATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
FD946185       --> CAATTGATATTTCTGTTTCTTCTTACAACTCTTCTGCTTCTTGTCGTGTT
FD543330       --> CAATTGATATGTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGTCGTGTT
FD571518       --> CAATTGATATTTCTGTTTCTTCTTACAGCTCTTCTGCTTCTTGCCGTGTT
EX753993       --> ..................................................

               751    -    801
UN25501        --> GTGTAAAGTCATTATCAACAATCATGTAATTGTCTATTTGCTTTTAGTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD983693       <-- GTGTAAAGTCATTATCAACAATCATGTAATTGTTTATTTGCTTTTAGTGC
FD969750       <-- GTGTAAAGTCATTATCAACAATCATGTAATTGTCTATTTGCTTTTAATGC
FD539194       <-- GTGTAAAGTCATTATCAACAATCATGTAATTGTCTATTTGCTTTTAATGC
FD942360       <-- ..................................................
FD987696       --> ..................................................
FD974232       --> GTGTAAAGTCATTATCAACAATCA..........................
FD946185       --> GTGTAAAGTCATTATCAACAATCATG........................
FD543330       --> GTGTAAAGTCATTATCAACAATCATGTAATTGTCTATTTG..........
FD571518       --> GTGTAAAGTCATTATCAACA-TCATGTAATTGTTTATTTGCTTTTAGTGC
EX753993       --> ..................................................

               801    -    851
UN25501        --> TTTTCAC.
                   ~~~~~~~~
FD983693       <-- TTTTCACt
FD969750       <-- TTTTCACg
FD539194       <-- g.......
FD942360       <-- ........
FD987696       --> ........
FD974232       --> ........
FD946185       --> ........
FD543330       --> ........
FD571518       --> TTTTC...
EX753993       --> ........