1      -     51
UN25540        --> GTAAGAAGAGAGATACATTTGCTTCTACCACAGGTCCAAGGGCTTGTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- ....................GCTTCTACCACAGGTCCAAGGGCTTGTGGT
EV551826       <-- ...............................................GGT
FD532948       <-- ..................................................
FD958832       --> GTAAGAAGAGAGATACATTTGCTTCTACCACAGGTCCAAGGGCTTGTGGT
EW721314       --> ....................GCTTCTACCACAGGTCCAAGGGCTTGTGGT
EV546858       --> ...............................................GGT
FD529273       --> ..................................................

               51     -    101
UN25540        --> CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
EV551826       <-- CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
FD532948       <-- ......................................CCAAGAACAACA
FD958832       --> CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
EW721314       --> CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
EV546858       --> CAAGAAAATAACATTTCAACTGAAAACGAAAACACATTCCAAGAACAACA
FD529273       --> ......................................CCAAGAACAACA

               101    -    151
UN25540        --> GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
EV551826       <-- GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
FD532948       <-- GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
FD958832       --> GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
EW721314       --> GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
EV546858       --> GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA
FD529273       --> GTTCAACTCAATTACAACTCAAAGTTTGCAGAAATACAAATAAACAACCA

               151    -    201
UN25540        --> TTCTTTCTCTACTCTACCACCTGCGGAGGCGGCGGCGACTGCTGAGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- TTCTTTCTCTACTCTACCACCTGCGGAGGCGGCGGCGACTGCTGAGACTC  Raphanus sativus var. oleiformis
EV551826       <-- TTCTTTCTCTACTCTACCACCTGCGGAGGCGGCGGCGACTGCTGAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532948       <-- TTCTTTCTCTACTCTACCACCTGCGGTGTCGGCGGCGGCTGCTGAAACTC  Raphanus raphanistrum subsp. maritimus
FD958832       --> TTCTTTCTCTACTCTACCACCTGCGGTGTCGGCGGCGGCTGCTGAGACTC  Raphanus raphanistrum subsp. maritimus
EW721314       --> TTCTTTCTCTACTCTACCACCTGCGGAGGCGGCGGCGACTGCTGAGACTC  Raphanus sativus var. oleiformis
EV546858       --> TTCTTTCTCTACTCTACCACCTGCGGAGGCGGCGGCGACTGCTGAGACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529273       --> TTCTTTCTCTACTCTACCACCTGCGGTGTCGGCGGCGGCTGCTGAAACTC  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN25540        --> CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
EV551826       <-- CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
FD532948       <-- CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
FD958832       --> CATCGGAATCTCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
EW721314       --> CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
EV546858       --> CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG
FD529273       --> CATCGGAATCCCAAGATCATTCCTCTTGAGAACAGGAAGGGCGACGAAAG

               251    -    301
UN25540        --> ACTTGGTCTTGCTGATGGGCCTGCTCTTCTCAAGCCTCACAACGTCACCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- ACTTGGTCTTGCTGATGGGCCTGCTCTTCTCAAGCCTCACAACGTCACCC  Raphanus sativus var. oleiformis
EV551826       <-- ACTTGGTCTTGCTGATGGGCCTGCTCTTCTCAAGCCTCACAACGTCACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532948       <-- ACTTGGTCTTACTAATGGGCCTGCTCTTTTCAAGCCTCACAACGTCACCC  Raphanus raphanistrum subsp. maritimus
FD958832       --> ACTTGGTCTTACTAATGGGCCTGCTCTTTTCAAGCCTCACAACGTCACCC  Raphanus raphanistrum subsp. maritimus
EW721314       --> ACTTGGTCTTGCTGATGGGCCTGCTCTTCTCAAGCCTCACAACGTCACCC  Raphanus sativus var. oleiformis
EV546858       --> ACTTGGTCTTGCTGATGGGCCTGCTCTTCTCAAGCCTCACAACGTCACCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529273       --> ACTTGGTCTTACTAATGGGCCTGCTCTTTTCAAGCCTCACAACGTCACCC  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN25540        --> ACCTTGAACACGTTATCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- ACCTTGAACACGTTATCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus sativus var. oleiformis
EV551826       <-- ACCTTGAACACGTTATCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532948       <-- ACCTTGAACACGTTGTCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus raphanistrum subsp. maritimus
FD958832       --> ACCTTGAACACGTTGTCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus raphanistrum subsp. maritimus
EW721314       --> ACCTTGAACACGTTATCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus sativus var. oleiformis
EV546858       --> ACCTTGAACACGTTATCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529273       --> ACCTTGAACACGTTGTCAGGGTCATGCGCCTGATACTTCTTCTTCATCCT  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN25540        --> CACGCGCCTTTTGTACTTGGGGTGCGGAGCCAGCCTCACCACCTCCACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- CACGCGCCTTTTGTACTTGGGGTGCGGAGCCAGCCTCACCACCTCCACCG  Raphanus sativus var. oleiformis
EV551826       <-- CACGCGCCTTTTGTACTTGGGGTGCGGAGCCAGCCTCACCACCTCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD532948       <-- CACGCGCCTCTTGTACTTGGGGTGTGGAGCCAGCCTCACCACTTCCACCG  Raphanus raphanistrum subsp. maritimus
FD958832       --> CACGCGCCTCTTGTACTTGGGGTGTGGAGCCAGCCTCACCACTTCCACCG  Raphanus raphanistrum subsp. maritimus
EW721314       --> CACGCGCCTTTTGTACTTGGGGTGCGGAGCCAGCCTCACCACCTCCACCG  Raphanus sativus var. oleiformis
EV546858       --> CACGCGCCTTTTGTACTTGGGGTGCGGAGCCAGCCTCACCACCTCCACCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD529273       --> CACGCGCCTCTTGTACTTGGGGTGTGGAGCCAGCCTCACCACTTCCACCG  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN25540        --> CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
EV551826       <-- CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
FD532948       <-- CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
FD958832       --> CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
EW721314       --> CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
EV546858       --> CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC
FD529273       --> CCACCGTCTTGTCGTTCGTTGCGCACACCACGCGTCCTTGCATCGTCTTC

               451    -    501
UN25540        --> ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
EV551826       <-- ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
FD532948       <-- ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
FD958832       --> ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
EW721314       --> ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
EV546858       --> ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA
FD529273       --> ATGGCTCTTATCGCCGGGACTAGGCCAGGCTTCCTGGTGTTCGGGAAGGA

               501    -    551
UN25540        --> AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG
EV551826       <-- AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG
FD532948       <-- AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG
FD958832       --> AACGGGTTTGGAGAGAGAA...............................
EW721314       --> AACGGGTTTGGAGAGAGAAGAAAGTGGAGTGGAGCCATGGGTGAATGGGG
EV546858       --> AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG
FD529273       --> AACGGGTTTGGAGAGAGAAGAGAGTGGAGTGGAGCCATGGGTGAATGGGG

               551    -    601
UN25540        --> AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW717298       <-- AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT
EV551826       <-- AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT
FD532948       <-- AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT
FD958832       --> ..................................................
EW721314       --> AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGC............
EV546858       --> AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT
FD529273       --> AGGAGGAGATCTTCAGAGACTGCAGAGATGAGGCTAGCGACGCCATTGAT

               601    -    651
UN25540        --> TTCC...
                   ~~~~~~~
EW717298       <-- TTgggcc
EV551826       <-- TTCC...
FD532948       <-- TTCC...
FD958832       --> .......
EW721314       --> .......
EV546858       --> TTCC...
FD529273       --> TTCC...