-19    -     31
UN25626        --> ....................ACAATCCTCAAAGGGGAA-TGATGAATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- ....................ACAATCCTCAAAAGGGAAATGATGAATACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- ......cggtgttttttattACAATCCTCAAAAGGGAAATGATGAATACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- gatttcagtgtttttttattACAATCCTCAAAGGGGAA-TGATGAATACA  Raphanus raphanistrum subsp. landra
EV567271       <-- gatttcagtgtttttttattACAATCCTCAAAGGGGAA-TGATGAATACA  Raphanus raphanistrum subsp. landra
EV541655       --> ......cggtgttttttattACAATCCTCAAAAGGGAAATGATGAATACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> gatttcagtgtttttttattACAATCCTCAAAGGGGAA-TGATGAATACA  Raphanus raphanistrum subsp. landra
EV572245       --> gatttcagtgtttttttattACAATCCTCAAAGGGGAA-TGATGAATACA  Raphanus raphanistrum subsp. landra

               31     -     81
UN25626        --> ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV537426       <-- ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV566545       <-- ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV567271       <-- ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV541655       --> ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV571653       --> ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA
EV572245       --> ACCACAACAAACAACAACAAAAGATGGTAGAGAACAAATTACAAACAAAA

               81     -    131
UN25626        --> CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV537426       <-- CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV566545       <-- CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV567271       <-- CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV541655       --> CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV571653       --> CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC
EV572245       --> CAAAAAACAAGCAACACATTCATATGAGAGATTTGAGTCACTGAGATCCC

               131    -    181
UN25626        --> CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- CATCCAGTAACACAACACGCGTGAATGAGAGAAAGGAAAACAGAGGAGGA
EV537426       <-- CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
EV566545       <-- CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
EV567271       <-- CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
EV541655       --> CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
EV571653       --> CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA
EV572245       --> CATCCAGTAACACAACACGCGTGAATGAGAGAAAGAAAAACAGAGGAGGA

               181    -    231
UN25626        --> GTATAAACACTCATAAATGACTTTTTTTTT--A-TTATTACAGGAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- GTATAAACACTCATAAATGACTTTTTTTTTTAA-TTATTACAGGAATCTC
EV537426       <-- GTATAAACACTCATAAATGACTTTTTTTTT--AATTATTACAGGAATCTC
EV566545       <-- GTATAAACACTCATAAATGACTTTTTTTTT--A-TTATTACAGGAATCTC
EV567271       <-- GTATAAACACTCATAAATGACTTTTTTTTT--A-TTATTACAGGAATCTC
EV541655       --> GTATAAACACTCATAAATGACTTTTTTTTT--AATTATTACAGGAATCTC
EV571653       --> GTATAAACACTCATAAATGACTTTTTTTTT--A-TTATTACAGGAATCTC
EV572245       --> GTATAAACACTCATAAATGACTTTTTTTTT--A-TTATTACAGGAATCTC

               231    -    281
UN25626        --> TCTCTCAGTTCTTGACAGTCGTGACATGTTTGAGGAGCATCTCCACAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- TCTCTCAGTTCTTGACAGTGGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- TCTCTCAGTTCTTGACAGTGGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- TCTCTCAGTTCTTGACAGTCGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. landra
EV567271       <-- TCTCTCAGTTCTTGACAGTCGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. landra
EV541655       --> TCTCTCAGTTCTTGACAGTGGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> TCTCTCAGTTCTTGACAGTCGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. landra
EV572245       --> TCTCTCAGTTCTTGACAGTCGTGACATGTTTGAGGAGCATCTCCACAACA  Raphanus raphanistrum subsp. landra

               281    -    331
UN25626        --> TCGTTCGAAATCCTGGCTGCTTCCTTCTTCAGCTGTTCGATTTTCTCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- TCGTTCGAAATCCTGGCTGCTTCGCTTTTGAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- TCGTTCGAAATCCTGGCTGCTTCGCTTTTGAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- TCGTTCGAAATCCTGGCTGCTTCCTTCTTCAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. landra
EV567271       <-- TCGTTCGAAATCCTGGCTGCTTCCTTCTTCAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. landra
EV541655       --> TCGTTCGAAATCCTGGCTGCTTCGCTTTTGAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> TCGTTCGAAATCCTGGCTGCTTCCTTCTTCAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. landra
EV572245       --> TCGTTCGAAATCCTGGCTGCTTCCTTCTTCAGCTGTTCGATTTTCTCATC  Raphanus raphanistrum subsp. landra

               331    -    381
UN25626        --> TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV537426       <-- TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV566545       <-- TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV567271       <-- TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV541655       --> TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV571653       --> TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT
EV572245       --> TGTCTCTTGCTCCAGCCGCTTCACATTCGCACCCGAGTCTCCACTTGTCT

               381    -    431
UN25626        --> CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV537426       <-- CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV566545       <-- CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV567271       <-- CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV541655       --> CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV571653       --> CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT
EV572245       --> CCTCAAGTTTCCTCTGGAAGTCTTGCTCTGTTTTCGCTTTGTATTCAGCT

               431    -    481
UN25626        --> ATCTCTTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- ATCTCCTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- ATCTCCTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- ATCTCTTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. landra
EV567271       <-- ATCTCTTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. landra
EV541655       --> ATCTCCTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> ATCTCTTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. landra
EV572245       --> ATCTCTTTCTCAGCCTCTTCCTTTGCTTGCTTCAGCCTTCCCATCTTTGC  Raphanus raphanistrum subsp. landra

               481    -    531
UN25626        --> GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- GGTCATTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV537426       <-- GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV566545       <-- GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV567271       <-- GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV541655       --> GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV571653       --> GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA
EV572245       --> GGTCCTTGCAGCATTGACGATGTGTTGAGCTTCTTGTTCAGCAGCAAGCA

               531    -    581
UN25626        --> ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCATTTCTCTCTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- ACTGCTGGATCCCACCTTGACCTCTGCTAGACTC----CATCTCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- ACTGCTGGATCCCACCTTGACCTCTGCTAGACTC----CATCTCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCATTTCTCTCTCTTTT  Raphanus raphanistrum subsp. landra
EV567271       <-- ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCATTTCTCTCTCTTTT  Raphanus raphanistrum subsp. landra
EV541655       --> ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCAT----CTCTCTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCATTTCTCTCTCTTTT  Raphanus raphanistrum subsp. landra
EV572245       --> ACTGCTGGATCCCACCTTGACCTCTGCTAGACTCCATTTCTCTCTCTTTT  Raphanus raphanistrum subsp. landra

               581    -    631
UN25626        --> ATCCTTTGCTTTTGGCTTGTTCCGACAGAGGAGAGAGAGAGACAATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535431       <-- ATCCTTTGCTTTTGGCTTGTTCCTACAGAGGAGAGAGAG--ACAATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537426       <-- ATCCTTTGCTTTTGGCTTGTTCCTACAGAGGAGAGAGAGAGACAATCAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566545       <-- ATCCTTTGCTTTTGGCTTGTTCCGACAGAGatccc...............  Raphanus raphanistrum subsp. landra
EV567271       <-- ATCCTTTGCTTTTGGCTTGTTCCGACAGAGatccc...............  Raphanus raphanistrum subsp. landra
EV541655       --> ATCCTTTGCTTTTGGCTTGTTCCTACAGAGGAG.................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571653       --> ATCCTTTGCTTTTGGCTTGTTCCGACAGAGatccc...............  Raphanus raphanistrum subsp. landra
EV572245       --> ATCCTTTGCTTTTGGCTTGTTCCGACAGAGatccc...............  Raphanus raphanistrum subsp. landra

               631    -    681
UN25626        --> ATCCC
                   ~~~~~
EV535431       <-- ATCCC
EV537426       <-- ATCCC
EV566545       <-- .....
EV567271       <-- .....
EV541655       --> .....
EV571653       --> .....
EV572245       --> .....