RadishBase

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Alignment for radish unigene UN25790

               1      -     51
UN25790        --> GGGAGACATCGAAAAAGCCGAAGAAAGTGAACTCTGTGCTATCTCTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................
FD942508       <-- ..................................................
EX892524       <-- ..................................................
FD538577       <-- ..................................................
EX765583       --> GGGAGACATCGAAAAAGCCGAAGAAAGTGAACTCTATGCTATCTCTACCT
EX888620       --> .....ggATCGAAAAAGCCGAAGAAAGTGAACTCTGTGCTATCTCTACCT
EW714546       --> ...............gGCCGAAGAAAGTGAACTCTGTGCTATCTCTACCT
EW723568       --> ............ggagGCCGAAGAAAGTGAACTCTGTGCTATCTCTACCT
EX894751       --> ............ggagGCCGAAGAAAGTGAACTCTGTGCTATCTCTACCT
FD946375       --> .................ggGAAGAAAGTGAACTCTGCGCTATCTCTACCT
FD542527       --> .......................ggAGTGAACTCTGTGCTATCTCTACCT
EW731992       --> ......................................ggATCTCTACCT

               51     -    101
UN25790        --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................
FD942508       <-- ..................................................
EX892524       <-- ..................................................
FD538577       <-- ..................................................
EX765583       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
EX888620       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
EW714546       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCGTTAGGTTAGAGAAGC
EW723568       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
EX894751       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
FD946375       --> GTTCCTCCCTCTACTTTATACCTACTCCTCCTCCGTTAGGTTAGAGAAGC
FD542527       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC
EW731992       --> GTTCCTCCCTCTACTCTATACCTACTCCTCCTCCG----GTTAGAGAAGC

               101    -    151
UN25790        --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................
FD942508       <-- ..................................................
EX892524       <-- ..................................................
FD538577       <-- ..................................................
EX765583       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAACTCTTCATCC
EX888620       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
EW714546       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
EW723568       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
EX894751       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
FD946375       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC
FD542527       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTCAAGAGCTCTTCATCC
EW731992       --> TTCTGATGGCTCCCCTTACACTCTCTGTTGATGTGAAGAGCTCTTCATCC

               151    -    201
UN25790        --> ACTGCTCCCGATGTCTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ..................................................  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> ACTGCTCCCGATGTATCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> ACTGCTCCCGATGTTTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus var. oleiformis
EW714546       --> ACTGCTCCCGACGTTTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus var. oleiformis
EW723568       --> ACTGCTCCCGATGTCTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ACTGCTCCCGATGTCTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus cv Early Scarlet Globe
FD946375       --> ACTGCTCCCGATGTCTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus cv Early Scarlet Globe
FD542527       --> ACTGCTCCCGATGTTTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> ACTGCTCCCGATGTCTCGAGTAGGGTAGTGCAGATTCCACAGATCAAAAA  Raphanus sativus cv Rat-Tail Radish #3870

               201    -    251
UN25790        --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTTTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ..................................................  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTTTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAAACGAAAACCCTTTTGATT  Raphanus sativus var. oleiformis
EW714546       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAAACGAAAACCCTTTTGATT  Raphanus sativus var. oleiformis
EW723568       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTTTGATT  Raphanus sativus cv Early Scarlet Globe
EX894751       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTT.....  Raphanus sativus cv Early Scarlet Globe
FD946375       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTTTGATT  Raphanus sativus cv Early Scarlet Globe
FD542527       --> GAGCAAAGGCTTTGCTTCTGTCAATACTCAAAACGAAAACCCTTTTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> GAGCAAAGGCTTTGCTTCAGTCAGTACGCAAGACGAAAACCCTTTTGATT  Raphanus sativus cv Rat-Tail Radish #3870

               251    -    301
UN25790        --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACGGCTGGAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ..................................................  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACGGCTGGAGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACGGCTGGAGTT  Raphanus sativus var. oleiformis
EW714546       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACGGCTGGAGTT  Raphanus sativus var. oleiformis
EW723568       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACAGCTGGAGTT  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946375       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACAGCTGGAGTT  Raphanus sativus cv Early Scarlet Globe
FD542527       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACGGCTGGAGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> TCTTCCGCACTCTCTTTGAGGGATTTATAGCAGGAGGTACAGCTGGAGTT  Raphanus sativus cv Rat-Tail Radish #3870

               301    -    351
UN25790        --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................
FD942508       <-- ..................................................
EX892524       <-- ..................................................
FD538577       <-- ..................................................
EX765583       --> GTAGTTGAAACTGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
EX888620       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
EW714546       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
EW723568       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
EX894751       --> ..................................................
FD946375       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
FD542527       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA
EW731992       --> GTAGTTGAAACAGCTTTATACCCTATTGATACTATAAAGACTAGACTTCA

               351    -    401
UN25790        --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTATATTCAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ..................................................  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> GTCAGCTCGTGGAGGTGGGAAGACTGTGTTGAAGGGTCTCTATTCAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGCCTCTATTCAGGAT  Raphanus sativus var. oleiformis
EW714546       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTCTATTCAGGAT  Raphanus sativus var. oleiformis
EW723568       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTATATTCAGGAT  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946375       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTATATTCAGGAT  Raphanus sativus cv Early Scarlet Globe
FD542527       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTATATTCAGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> GGCAGCTCGTGGAGGTGGGAAGATTGTGTTGAAGGGTCTATATTCAGGAT  Raphanus sativus cv Rat-Tail Radish #3870

               401    -    451
UN25790        --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ..................................GGCTTTATTTGTGGGA
FD942508       <-- ..................................................
EX892524       <-- ..................................................
FD538577       <-- ..................................................
EX765583       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
EX888620       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
EW714546       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
EW723568       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
EX894751       --> ..................................................
FD946375       --> TAGCTGGAAATGTCGCTGGTGTCTTACCGGCCTCGGCTTTATTTGTGGGA
FD542527       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA
EW731992       --> TAGCTGGAAATATCGCTGGTGTCTTACCGGCTTCGGCTTTATTTGTGGGA

               451    -    501
UN25790        --> GTTTATGAACCCACAAAGCAGAAACTGCTTAAGACCTTTCCTGATCATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- GTTTATGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTT  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ..................................................  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> GTTTATGAACCCACAAAGCAGAAACTGCTTAAGACCTTTCCTGATCATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> GTTTATGAACCCACAAAGCAGAAACTGCTTAAGACCTTTCCTGATCATTT  Raphanus sativus var. oleiformis
EW714546       --> GTTTATGAACCCACAAAGCAGAAACTGCTTAAGACCTTTCCTGATCATTT  Raphanus sativus var. oleiformis
EW723568       --> GTTTATGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTT  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946375       --> GTTTATGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTT  Raphanus sativus cv Early Scarlet Globe
FD542527       --> GTTTATGAACCCACAAAGCAGAAACTGCTTAAGACCTTTCCTGATCATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> GTTTATGAACCCACAAAGCAGAAACTGCTGAAGACCTTTCCTGATCATTT  Raphanus sativus cv Rat-Tail Radish #3870

               501    -    551
UN25790        --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- AAGCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- ..GCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- ...................ACTGCAGGGGCTATCGGTGGACTTGCTGCCT  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCTATCGGTGGACTTGCTGCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCTATCGGTGGACTTGCTGCCT  Raphanus sativus var. oleiformis
EW714546       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCTATCGGTGGACTTGCTGCCT  Raphanus sativus var. oleiformis
EW723568       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946375       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT  Raphanus sativus cv Early Scarlet Globe
FD542527       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCCATCGGTGGACTTGCTGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> AAGCGCAGTTGCTCACTTGACTGCAGGGGCAATCGGTGGACTTGCTGCCT  Raphanus sativus cv Rat-Tail Radish #3870

               551    -    601
UN25790        --> CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCAGAGAATGCAGACCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CTCTGATTCGAGTGCCTACAGGGGTTGTGAAGCAGAGAATGCAGACCGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD942508       <-- CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCTGAGAATGCAGACCGGA  Raphanus sativus cv Early Scarlet Globe
EX892524       <-- CTCTGATTCGAGTGCCT--AGAGGTTGTGAAGCAGAGAATGCAGACTGGA  Raphanus sativus var. oleiformis
FD538577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765583       --> CTCTGATTCGAGTGCCTACAGAGGTCGTGAAGCAGAGAATGCAGACTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888620       --> CTCTGATTCGAGTGCCTA--GAGGTTGTGAAGCAGAGAATGCAGACTGGA  Raphanus sativus var. oleiformis
EW714546       --> CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCAGAGAATGCAGACTGGA  Raphanus sativus var. oleiformis
EW723568       --> CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCAGAGAATGCAGACCGGA  Raphanus sativus cv Early Scarlet Globe
EX894751       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD946375       --> CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCTGAGAATGCAGACCGGA  Raphanus sativus cv Early Scarlet Globe
FD542527       --> CTCTGATTCGAGTGCCTACAGAGGTTGTGAAGCAG...............  Raphanus raphanistrum subsp. raphanistrum (MS)
EW731992       --> CTCTGATTCGAGTGCCTACAGGGGTTGTGAAGCAGAGAATGCAGACCGGA  Raphanus sativus cv Rat-Tail Radish #3870

               601    -    651
UN25790        --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
FD942508       <-- CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATCGCATCACAAGAGGG
EX892524       <-- CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
FD538577       <-- .........................................ACAAGAGGG
EX765583       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
EX888620       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
EW714546       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCACCACAAGAGGG
EW723568       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG
EX894751       --> ..................................................
FD946375       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATCGCATCACAAGAGGG
FD542527       --> ..................................................
EW731992       --> CAGTTTGCATCAGCTCCCAACGCTGTTCGAGTTATTGCATCACAAGAGGG

               651    -    701
UN25790        --> -CTTCAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- -CTTCAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTG
FD942508       <-- -CTTCAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTA
EX892524       <-- -CTTCAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTG
FD538577       <-- -CTTTAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTG
EX765583       --> -CTTCAGGGGTCTCTATGCACGATACCGATCCTTCCTATTGAGAGATTTG
EX888620       --> -CTTCAGGGGTCTCTATGCAG-ATACCGATCCTTCCTATTGAGAGATTTG
EW714546       --> GCTTCAGGGGTCTCTAT.................................
EW723568       --> -CTTCAGGGGTCTCTATGCAGGATACCGATCCTTCCTATTGAGAGATTTA
EX894751       --> ..................................................
FD946375       --> -CTTCAGGGGTCTCTATGCAG-ATACCGATCCTTCCTATTGAGAGATTTA
FD542527       --> ..................................................
EW731992       --> -CTTCAGGGGTCTCTATGCAG-ATACCGATCCTTCCTATTGAGAGATTTG

               701    -    751
UN25790        --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
FD942508       <-- CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
EX892524       <-- CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
FD538577       <-- CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
EX765583       --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
EX888620       --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
EW714546       --> ..................................................
EW723568       --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
EX894751       --> ..................................................
FD946375       --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA
FD542527       --> ..................................................
EW731992       --> CCGTTTGATGCTATTCAGTTCTGCATTTATGAGCAGCTATGCTTGGGGTA

               751    -    801
UN25790        --> TAAAAAA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- TAAAAAAAGCAGC--GTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
FD942508       <-- TAAAAGA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
EX892524       <-- TAAAAAA-ACAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
FD538577       <-- TAAAAAA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
EX765583       --> TAAAAAA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCAT.
EX888620       --> T.................................................
EW714546       --> ..................................................
EW723568       --> TAAAAGA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGAACGCTCTCATT
EX894751       --> ..................................................
FD946375       --> TAAAAGA-GCAGCGCGTAGAGAGCTTAATGATCCTGAGA-CGCTCTCATT
FD542527       --> ..................................................
EW731992       --> TAAAAAA-GCAGCG--TAGAGAGCTTAATGATCCTGAGAACGCTCTCATT

               801    -    851
UN25790        --> GGTGCATTTGCTGGTGCTCTGACAGGAGCTGTCACCACTCC-GCTTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- GGTGCATTTGCTGGTGCTCTGACAGGAGCTGTCACCACTCC-GCTTGATG
FD942508       <-- GGTGCATTTGCTGGTGTTCTGACAGGAGCTGTCACCACTCC-GCTTGATG
EX892524       <-- GGTGCATTTGCTGGTGCTCTGACAGGAGCTGTCACCACTCC-GCTTGATG
FD538577       <-- GGTGCATTTGCTGGTGCTCTGACAGGAGCTGTCACCACTCC-GCTTGATG
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> GGTGCATTTGCTGGTG..................................
EX894751       --> ..................................................
FD946375       --> GGTGCATTTGCTGGTGCTCTGACAGGAGCTGTCACact............
FD542527       --> ..................................................
EW731992       --> GGTGCATTTGCTGGTGCTCTGACAG-AGCTGTCACCACTCCCGCTTGATG

               851    -    901
UN25790        --> TTATTAAGACAAGATTAATGGTTCAGGGATCAGCTAAACAATATCAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- TTATTAAGACAAGATTGATGGTTCAGGGATCAGCTAAACAATATCAAGGA
FD942508       <-- TTATCAAGACAAGATTAATGGTTCAGGGATCAGCTAAACAATATCAAGGA
EX892524       <-- TTATTAAGACAAGATTAATGGTTCAGGGATCAGCTAAACAATATCAAGGA
FD538577       <-- TTATTAAGACAAGATTAATGGTTCAGGGATCAGCTAAACAATATCAAGGA
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> TTATTAAGACA-GATTGATGG.............................

               901    -    951
UN25790        --> ATAGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTTCTGCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- ATAGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTTCTGCTCT
FD942508       <-- ATAGTTGACTGTGTTCAAACAATTGTAAGAGAGGAGGGAGCTTCTGCTTT
EX892524       <-- ATAGTAGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTTCTGCTCT
FD538577       <-- ATAGTTGACTGTGTTCAAACAATTGTAAGAGAGGAAGGAGCTTCTGCTCT
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               951    -   1001
UN25790        --> CTTAAAGGGTATAGGGCCAAGAGTGTTGTGGATAGGTATTGGTGGTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CTTAAAGGGTATAGGGCCAAGAGTGTTGTGGATAGGTATTGGTGGTTCAA
FD942508       <-- CTTAAAGGGTATAGGGCCAAGAGTGTTGTGGATAGGTATTGGTGGTTCAA
EX892524       <-- CTTAAAGGGTATAGGGCCAAGAGTGTTGTGGATAGGTATTGGTGGTTCAA
FD538577       <-- CTTAAAGGGTATAGGGCCAAGAGTGTTGTGGATAGGTATTGGTGGTTCAA
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1001   -   1051
UN25790        --> TCTTCTTTGGTGTCCTTGAGAGCACGAAGAGAACACTTGCAGAGAGACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- TCTTCTTTGGTGTCCTTGAGAGCACGAAGAGAACACTTGCAGAGAGACGT
FD942508       <-- TCTTCTTTGGTGTCCTCGAGAGCACGAAGAGAACACTTGCAGAGAGACGT
EX892524       <-- TCTTCTTTGGTGTCCTTGAGAGCACGAAGAGAACACTTGCAGAGAGACGT
FD538577       <-- TCTTCTTTGGTGTCCTTGAGAGCACGAAGAGAACACTTGCAGAGAGACGT
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1051   -   1101
UN25790        --> CCCAAGACGGTTAAAGAATCGAAAGAGGATTGAGTTT-CTTGCACACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CCCAAGACGGTTAAAGAATCGAAAGAGGATTGAGTTTTCTTGCACATTAT
FD942508       <-- CCCAAGACGGTTAAAGAATCGAAAGAGAATTGAGCTT-CTTGCACACTAT
EX892524       <-- CCCAAGACGGTTAAAGAATCGAAAGAGGATCGAGTTT-CTTGCACACTAT
FD538577       <-- CCCAAGACGGTTAAAGAATCGAAAGAGGTTTGAGTTT-CTTGCACACTAT
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1101   -   1151
UN25790        --> TCTTGAGGACTATAAAAATGGTTGAAAGGTGATACTGTTGGACATTCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- TCTTGAGGACTATAAAAATGGTTGAAAGGTGATACTGTTGGACATTCAAC
FD942508       <-- TCTTGAGGACAATAAAAATGGTTGAAAGGTGATACTGTTGGACATTCAAC
EX892524       <-- TCTTGAGGACTATAAAAATGGTTGAAAGGTGATACTGTTGGACATTCAAC
FD538577       <-- TCTTGAGGACTATAAAAATGGTTGAAAGGTGATACTGTTGGACATTCAAC
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1151   -   1201
UN25790        --> CGAGCCCCTTTGTGTGAGTTCTATGT-GATCAGACTGTGAATCAT--GAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CGATCCCCTTTGTGTGAGTTCTATGTTGATCAGACTGTGAATCAT--GTT
FD942508       <-- CGAGCCCATTTGTGCGAGTTCTATGT-GATCAGACTGTGAATCATACGAT
EX892524       <-- CGAGCCCCTTTGTGTGAGTTCTATGT-GATCAGACTGTGAATCAT--GAT
FD538577       <-- CGAGCCCCTTTGTGTGAGTTCTATGC-GATCAGACTGTGAATCAT--GAT
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1201   -   1251
UN25790        --> CATTTCAACTTTTATTCCCCAGATAAAATAAAGTGGCAAAATATCAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- CATTTCAACTTTAATTCCCCAGATAAAATAA...................
FD942508       <-- CATTTCAACTTTTATTCCCCAGATAAAATAAAGTGGCAAAATAcc.....
EX892524       <-- CATTTCAACTTTCTTTCCCCAGATAAAATAAAGTGGCAAAATATCAAATT
FD538577       <-- CATTTCAACTTcc.....................................
EX765583       --> ..................................................
EX888620       --> ..................................................
EW714546       --> ..................................................
EW723568       --> ..................................................
EX894751       --> ..................................................
FD946375       --> ..................................................
FD542527       --> ..................................................
EW731992       --> ..................................................

               1251   -   1301
UN25790        --> CGATGTTATTAAATGTTGATAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EW736369       <-- .........................
FD942508       <-- .........................
EX892524       <-- CGATGTTATTAAATGTTGATAGCGT
FD538577       <-- .........................
EX765583       --> .........................
EX888620       --> .........................
EW714546       --> .........................
EW723568       --> .........................
EX894751       --> .........................
FD946375       --> .........................
FD542527       --> .........................
EW731992       --> .........................