Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN26107

               1      -     51
UN26107        --> GGTGGATCAAATTGAGTACCGATTCAAAAAGTTTCAAACAACACTCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> GGTGGATCAAATTGAGTACCGATTCAAAAAGTTTCAAACAACACTCAAAT
EX904095       --> ..cGGATCAAATTGAGTACCGATTCAAAAAGTTTCAAACAACACTCAAAT
EX897527       --> ...........ggGAGTACCGATTCAAAAAGTTTCAAACAACACTCAAAT
FD534217       --> ...........ggGAGTACCGATTCAAAAAGTTTCAAACAACACTCATAT
EX773293       --> .........................AAAAAGTTTCAAACAACACTCATAT

               51     -    101
UN26107        --> TCGTAAAAATGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> TCGTAAAAATGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG
EX904095       --> TCGTAAAAATGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG
EX897527       --> TCGTAAAAATGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG
FD534217       --> TCGTAAAA-TGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG
EX773293       --> TCGTAAAA-TGGCCGGTCTCCGAGTGCAAACGCTCATATTCGTTCTGGTG

               101    -    151
UN26107        --> ACCTTAGCTATTCTAGATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> ACCTTAGCTATTCTAGATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA
EX904095       --> ACCTTAGCTATTCTAGATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA
EX897527       --> ACCTTAGCTATTCTAGATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA
FD534217       --> ACCTTAGCTATTCTAAATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA
EX773293       --> ACCTTAGCTATTCTAAATCGCACCGTTGTGGAGGCAAACTTCGACAAGAA

               151    -    201
UN26107        --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC
EX904095       --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC
EX897527       --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC
FD534217       --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC
EX773293       --> TTTTATTGTTACATGGGGTAATCAGCATATTGGTGTGACTGGTGACAACC

               201    -    251
UN26107        --> TTCGACTTGTCCTTGACAAATCTGCAGGATCTGCTATTCGCTCAAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> TTCGACTTGTCCTTGACAAATCTGCAGGATCTGCTATTCGCTCAAAGGTG
EX904095       --> TTCGACTTGTCCTTGACAAATCTGCAGGATCTGCTATTCGCTCAAAGGTG
EX897527       --> TTCGACTTGTCCTTGACAGATCTGCGGGATCTGCTATTCGCTCAAAGGTG
FD534217       --> TTCGACTTGTCCTTGACAAATCTGCAGGATCTGCTATTCGCTCAAAGGTG
EX773293       --> TTCGACTTGTCCTTGACAAATCTGCAGGATCTGCTATTCGCTCAAAGGTG

               251    -    301
UN26107        --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- ..................................................
FD568624       --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA
EX904095       --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA
EX897527       --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA
FD534217       --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA
EX773293       --> GCTCACTTGTTCGGAACTGTAGAAATGCTTATCAAACTTGTGCCAGGGAA

               301    -    351
UN26107        --> CTCTGCTGGAACCGTTGCAGCTTGTTACATGTCGTCCACGGGAACTGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- CTCTGCTGGAACCGTTGCAGCTTATTACATGTCGTCCACGGGAACTGCAC  Raphanus raphanistrum subsp. landra
FD572941       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD568624       --> CTCTGCTGGAACCGTTGCAGCTTGTTACATGTCGTCCACGGGAACTGCAC  Raphanus sativus cv Early Scarlet Globe
EX904095       --> CTCTGCTGGAACCGTTGCAGCTTGTTACGTGTCGTACACGGGAACTGCAC  Raphanus sativus cv Rat-Tail Radish #3870
EX897527       --> CTCTGCTGGAGCCGTTGCAGCTTGTTACATGTCGTCCACGGGAACTGCAC  Raphanus sativus cv Early Scarlet Globe
FD534217       --> CTCTGCTGGAACCGTTGCAGCTTATTACATGTCGTCCACGGGAACTGCAC  Raphanus raphanistrum subsp. maritimus
EX773293       --> CTCTGCTGGAACCGTTGCAGCTTATTACATGTCGTCCACGGGAACTGCAC  Raphanus raphanistrum subsp. landra

               351    -    401
UN26107        --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
FD572941       <-- .............................AATTCCACTGGCGAGCCGTAC
FD568624       --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
EX904095       --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
EX897527       --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
FD534217       --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC
EX773293       --> ACGACGAGATAGACTTTGAGTTCCTAGGGAATTCCACTGGCGAGCCGTAC

               401    -    451
UN26107        --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
FD572941       <-- ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
FD568624       --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
EX904095       --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
EX897527       --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
FD534217       --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA
EX773293       --> ACGATCCACACCAATATATTTGCTAACGGGAAAGGAGATCGCGAGCAACA

               451    -    501
UN26107        --> ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC
FD572941       <-- ATTCAAACCATGATTTAACCCGACCAATGGTTTCCACAACTATACCATTC
FD568624       --> ATTCAAACCATGATTTAACCCGACCAATGGTTTCCACAACTATACCATTC
EX904095       --> ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC
EX897527       --> ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC
FD534217       --> ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC
EX773293       --> ATTCAAACCATGGTTTAACCCGACCAATGGTTTCCACAACTATACCATTC

               501    -    551
UN26107        --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
FD572941       <-- ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
FD568624       --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
EX904095       --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
EX897527       --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
FD534217       --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA
EX773293       --> ATTGGAACCCATCTGAAGTTGTGTGGTTCGTGGATGGAACTCCAATAAGA

               551    -    601
UN26107        --> GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG
FD572941       <-- GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG
FD568624       --> GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAG-
EX904095       --> GTTTATAGGAACTACGAG--GGAAGGAATCGCATACCCAAACAAGCAAG-
EX897527       --> GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG
FD534217       --> GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG
EX773293       --> GTTTATAGGAACTACGAGAAGGAAGGAATCGCATACCCAAACAAGCAAGG

               601    -    651
UN26107        --> TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACACAAG
FD572941       <-- TATGAAAGTGTTTGCGAGTTTATGGAGCGCAGACGACTGGGGGACACAAG
FD568624       --> TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACACAA.
EX904095       --> TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACA....
EX897527       --> TATGAAAGTGTTTGCGAGTCTATGGAGCGTAGACGACTGGGCGACACAAG
FD534217       --> TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACACAAG
EX773293       --> TATGAAAGTGTTTGCGAGTCTATGGAGCGCAGACGACTGGGCGACACAAG

               651    -    701
UN26107        --> GAGGTCGAGTGAAGACAAACTGGACACAAGCACCGTTTGTGGCCGAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- GAGGTCGAGTGAAGACAAACTGGACACAAGCACCGTTTGTGGCCGAGGGT
FD572941       <-- GAGGTCGAGTGAAGACAAACTGGACACAAGCACCGTTTGTGGCCGAGGGT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> GAG-TCGAGTGAAGACAA-CTGGACACAAGCACCGTTTGTGGCCGAGGGT
FD534217       --> GAGGTCGAGTGAAGACAAACTGGACACAAGCACCGTTTGTGGCCGAGGGT
EX773293       --> GAGGTCGAGTGAAGACAA-CTGGACACAAGCACCGTTTGTGGCCGAGGGT

               701    -    751
UN26107        --> CGTAGGTACAAGGCAAGAACCTGCGTGTGGCAGGGACCGGTTAGCATCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- CGTAGGTACAAGGCAAGAACCTGCGTGTGGCAGGGACCGGCTAGCATCAA
FD572941       <-- TGTAGGTACAAGGCAAGAACCTGCGTGTGGCAGGGACCGGTTAGCATCAA
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> C.................................................
FD534217       --> CG................................................
EX773293       --> CGTAG.............................................

               751    -    801
UN26107        --> GCAATGCTCAGATCCAACCATAAAGTTTAATTGGTGGACTTCACCGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- GCAATGCGCAGATCCAACCATAAAGTCTAATTGGTGGACTTCACCGTCGT
FD572941       <-- GCAATGCTCAGATCCAACCATAAAGTTTAATTGGTGGACTTCACCGTCGT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               801    -    851
UN26107        --> TTAGCCAGCTAACTCGAACGCAAATAGGCAGGATGCAAAAGATACGATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- TTAGCCAGCTAACTCGAACGCAAATAGGCAGGATGCAAAAGATACGATCT
FD572941       <-- TTAGCCAGCTAACTCGAACGCAAATAGACAGGATGCAAAAGATACGATCT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               851    -    901
UN26107        --> GGTTTCATGATCTATGATTACTGCAAGGACACTAACAGGTTTAAAGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- GGTTTCATGATCTATGATTACTGCAACGACACTAACAGGTTTAAAGGTGT
FD572941       <-- GGTTTCATGATCTATGATTACTGCAAGGACACAAACAGGTTTAAAGGTGT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               901    -    951
UN26107        --> CATGCCTCCGGAATGCTCCAAGAGACAATTTTAATCAAAGTTTTTTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- CATGCCTCCGGAATGCTCCAAGAGACAATTCTAATCAAAGTTTTTTTTTA
FD572941       <-- CATGCCTCCGGAATGCTCCAAGAGACAATTTTAATCAAAGTTTTTTTTTA
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               951    -   1001
UN26107        --> ATATATATTATACTTTCCCTTTTTTTGAATTTCAATCGTAATATGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ATATATATTATACTTTCCCTTTTTCTGAATTTCAATCGTAATATGTTTTT
FD572941       <-- ATATATATTATACTTTCCCTTTTTTTGAATTTCAATCGTAATATGTTTTT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               1001   -   1051
UN26107        --> GTTTGTCTTTTTCAAAAAAAAAAATATGTTTTTCTTTGTGTGGAATTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- GTTTGTgtag........................................
FD572941       <-- CTTTGTCTTTTTCAAAAAAAAAAATATGTTTTTCTTTGTGTGGAATTCCT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               1051   -   1101
UN26107        --> TTTGTGTGTTCATTCATTTATAATTTTTCATTCGTATGATAAACAATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX777107       <-- ..................................................
FD572941       <-- TTTGTGTGTTCATTCATTTATAATTTTTCATTCGTATGATAAACAATGAT
FD568624       --> ..................................................
EX904095       --> ..................................................
EX897527       --> ..................................................
FD534217       --> ..................................................
EX773293       --> ..................................................

               1101   -   1151
UN26107        --> AAGTTTGTTCTTTCTGG
                   ~~~~~~~~~~~~~~~~~
EX777107       <-- .................
FD572941       <-- AAGTTTGTTCTTTCTGG
FD568624       --> .................
EX904095       --> .................
EX897527       --> .................
FD534217       --> .................
EX773293       --> .................